The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	27282	70036	4106379	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	77634	136108	4106379	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	164894	225405	4106379	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	233337	286925	4106379	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278109_278256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	390857	448366	4106379	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	589371	650563	4106379	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590818_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592706_593198_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593216_594290_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594336_595440_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595515_596136_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596156_596666_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596720_596972_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597035_598169_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598176_598563_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598559_601079_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601507_601846_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601842_602349_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602410_603211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603321_604263_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604356_605892_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607571_609422_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609425_610259_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610258_611200_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611451_612423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612564_614853_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615159_616068_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616122_617088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617162_618824_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618895_619606_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619572_619737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619754_620705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621403_621787_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621844_622447_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622464_622866_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622999_623893_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623889_624471_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625265_626000_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626040_627090_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627237_627816_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628202_629180_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629273_633668_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633868_634717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634875_635688_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635743_636694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636792_637593_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637654_638038_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638049_639483_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639689_640019_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640021_640771_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640953_641874_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641920_642133_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642155_642578_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642594_643695_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643791_645309_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645384_646224_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646245_647127_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647208_648303_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648596_649547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649621_650563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	655887	702078	4106379	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655887_656913_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656953_657193_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657262_658852_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658851_659400_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659480_660053_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660071_660983_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661056_662025_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662147_663221_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663225_665046_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665122_666073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666161_666497_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666630_667281_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667302_668721_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668790_669546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669514_670273_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670283_671165_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671181_671889_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671891_672650_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672859_674602_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674594_675119_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675158_675953_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676120_677194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677292_678243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678494_678701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678772_679384_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679938_680190_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680182_680872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680889_681111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681128_682079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682718_683204_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683190_684468_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684470_685889_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685917_686973_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686978_687221_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687343_687946_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688374_689325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689999_690251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690313_690796_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690797_690998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690997_691393_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691389_691788_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691784_692207_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692214_692715_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692969_693488_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693497_693827_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693844_694135_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694160_696773_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696782_697142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697209_697743_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697739_698129_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698121_702078_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	708244	762174	4106379	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708244_709975_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710027_710456_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710458_711139_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711138_711597_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711633_712608_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712624_713941_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713972_714470_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714556_715246_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715245_716295_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716291_717086_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717254_717605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717580_718138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719267_720218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722355_723585_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723587_725030_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725134_726280_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726311_727109_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727133_728693_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728689_731062_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731171_732275_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732274_732967_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733110_733812_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733796_734174_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734905_735856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736015_736888_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737228_737447_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737486_738866_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738907_740305_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740344_741997_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742000_742885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742884_743826_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743904_745524_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745690_746506_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746573_747143_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747143_748094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748748_749846_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749879_751145_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751302_752253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752496_753087_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753102_755547_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755666_756638_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756769_757294_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757253_758204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758425_760621_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760693_761122_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761223_762174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	853052	902316	4106379	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853052_854003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854020_854575_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854576_855011_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855007_855442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855425_856229_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856245_857061_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857057_857873_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858019_858721_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858748_860707_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860789_861740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861960_862629_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862752_863859_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863871_866985_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866981_868475_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868489_869161_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869204_869699_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869839_870487_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870590_872639_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872635_874648_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874673_876008_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876116_877109_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877175_879260_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879284_880256_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880384_881416_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881419_882571_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882741_883665_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883742_884567_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884763_885780_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885976_886960_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888558_889947_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889977_890967_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891077_892310_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892591_893392_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893414_895646_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896433_896880_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896901_897648_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897791_898769_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899402_900014_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900007_901225_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901365_902316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	911928	976868	4106379	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911928_912879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912875_914708_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915106_915766_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915859_916006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916114_916282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916293_916974_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917255_917972_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917986_919288_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921432_924321_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924544_925897_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925925_926447_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926443_927898_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927932_928181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928286_929162_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929187_930243_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930255_931047_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931079_932450_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933626_934577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934629_934851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935010_935223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935342_936461_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936966_937218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937330_938281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938277_938661_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938715_940530_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940679_941507_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941552_942533_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942529_942742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942738_943920_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944083_944818_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944819_947432_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947567_949481_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950096_950507_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950604_951690_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951788_952739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952735_953710_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953834_954746_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955022_955415_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955544_956495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956524_956707_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957479_958661_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958876_959554_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959550_960276_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960401_960983_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961353_964035_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964034_965168_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965160_966246_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966332_967232_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967228_968557_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968571_969243_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969430_971146_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971147_971507_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971698_972013_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972055_973276_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973272_974214_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974210_975200_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975234_975819_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975917_976868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	996268	1059419	4106379	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|996268_997219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997323_998373_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998510_999527_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001035_1001608_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001667_1002399_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002450_1003368_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004175_1007355_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007351_1008734_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008803_1009055_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009200_1009815_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1010001_1012116_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012191_1013043_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013039_1013666_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013662_1015417_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015709_1018415_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018427_1020089_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020101_1021892_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022113_1023289_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023331_1024282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024380_1025121_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025315_1027352_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027369_1028380_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028497_1029691_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029720_1030494_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030490_1031681_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031706_1032645_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032641_1034990_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035144_1035786_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035889_1037023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037115_1037268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037299_1037848_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037866_1038352_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038529_1039468_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039470_1039788_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039833_1040778_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042458_1043109_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043162_1043498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043494_1044355_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044371_1044653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044726_1044990_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045233_1046184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046482_1047220_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047655_1047979_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048013_1048574_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048694_1049570_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049582_1050530_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050631_1050925_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050951_1053009_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053023_1053524_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053597_1055304_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056167_1057220_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057272_1057662_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057670_1058303_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058402_1059419_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1065403	1125466	4106379	tRNA,holin,protease,transposase	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1065403_1066831_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067768_1068785_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069117_1070053_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070102_1071983_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072049_1072394_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072538_1073675_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073671_1074745_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074902_1076339_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076429_1077071_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077406_1078423_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080465_1081416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082618_1084040_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084303_1085020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085104_1085422_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085462_1085876_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085877_1086237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086279_1087824_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087907_1088738_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088772_1089927_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089969_1090842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090958_1093247_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094453_1094918_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094944_1095895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095912_1096050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096262_1097039_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097083_1097941_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097962_1098979_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099113_1100154_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100348_1102430_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102665_1104159_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104389_1105184_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105404_1106763_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106759_1107602_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107620_1109507_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109448_1109700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109744_1110377_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110395_1110998_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111149_1112100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112680_1113388_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113746_1114733_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114872_1115886_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115882_1116833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116850_1116991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116945_1117404_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117440_1118754_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118771_1119143_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119139_1120603_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120743_1121472_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121453_1124303_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124515_1125466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1156532	1218703	4106379	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1156532_1157483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157581_1158205_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158378_1160661_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160815_1163512_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163637_1164126_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166536_1169407_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169452_1170667_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170896_1172324_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172421_1173513_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173525_1174284_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174371_1175274_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175270_1176221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176350_1177334_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177388_1178111_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179589_1180945_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181025_1183401_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183565_1185641_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185702_1186503_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186604_1187567_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187554_1188310_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188417_1190055_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190122_1190860_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190962_1191538_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191710_1192247_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192249_1192594_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192609_1193455_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193493_1194873_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194950_1195832_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195930_1196881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196877_1197288_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197395_1198250_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198242_1199205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199250_1200375_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200480_1201359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201483_1202263_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202416_1203838_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204272_1205970_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206196_1207138_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207464_1208211_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208218_1209145_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209266_1210184_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210223_1211177_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211201_1211780_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213453_1214062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214139_1214493_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214576_1215566_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215562_1215751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215768_1216719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216805_1217756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217752_1218703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1291666	1328432	4106379	transposase	Salmonella_phage(50.0%)	36	NA	NA
WP_005013747.1|1291666_1292617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293238_1294966_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295077_1296436_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296492_1296711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296728_1297679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297719_1298790_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298812_1299691_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299862_1300834_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300996_1301839_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302000_1302681_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302674_1303844_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303840_1304872_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304915_1306157_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306191_1307724_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307804_1308428_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308458_1309070_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309105_1309576_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310007_1311012_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311048_1312563_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312566_1313526_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313554_1314358_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314359_1315994_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316077_1317139_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317337_1317607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317610_1318135_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318550_1319501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319497_1320532_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320640_1321279_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321573_1321801_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321923_1322637_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322881_1323832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323935_1324217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324331_1325780_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325890_1326841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1326837_1327287_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1327481_1328432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1417074	1469227	4106379	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1417074_1418025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418042_1418195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418191_1418545_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418557_1418920_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418961_1419387_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419589_1420846_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421044_1422025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422174_1423416_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423514_1424465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424473_1425169_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427990_1428590_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428600_1430766_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430789_1432574_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432573_1432663_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433357_1433630_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433629_1435696_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435692_1436643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437807_1438140_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438136_1438823_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438809_1439769_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439810_1442171_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442170_1442803_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442904_1444245_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444291_1445647_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445772_1446417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446361_1446679_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446951_1447467_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447560_1447722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447737_1448493_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448831_1449038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449045_1449705_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449999_1452204_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452314_1453538_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453660_1454635_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454702_1455896_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455910_1456711_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456707_1458564_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458560_1459166_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459184_1460570_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461295_1462522_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462610_1463393_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463491_1464442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464468_1465242_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465253_1466495_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468276_1469227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1513152	1573064	4106379	tRNA,transposase	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1513152_1513641_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513758_1514337_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514442_1514811_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514909_1515860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515866_1516979_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517665_1518868_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518903_1519050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519071_1521732_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1521744_1525149_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525816_1528042_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528088_1528415_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528465_1529074_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529172_1530123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|1530221_1531172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531241_1532006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532002_1532602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532705_1533557_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533616_1534243_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534239_1535190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535288_1536401_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536390_1537392_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537497_1539009_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539005_1540310_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540421_1540982_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541249_1541804_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542259_1542475_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542729_1545327_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545323_1546511_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547169_1547784_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547872_1549000_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549011_1549917_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550809_1551760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551941_1552694_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552762_1553422_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553418_1554147_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554159_1556439_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556463_1556667_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556708_1557341_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557476_1558394_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558390_1559104_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559341_1560112_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560116_1560716_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560960_1562451_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562509_1562794_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562931_1563087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563359_1564286_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564422_1565163_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565329_1566706_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566887_1567793_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569444_1571247_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571373_1572015_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572113_1573064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1618236	1673827	4106379	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618236_1619187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619245_1620019_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620011_1621568_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621564_1622515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623841_1624444_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624683_1625385_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625378_1626161_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626345_1627296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627394_1628132_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628321_1629080_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629126_1630116_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630293_1631262_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632801_1633770_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633778_1634720_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635193_1636204_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636194_1637709_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637705_1639052_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639054_1640089_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640138_1641764_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642316_1643267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643371_1644319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644372_1646187_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646179_1646854_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646983_1650058_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650071_1650371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650685_1651309_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651552_1652422_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652399_1653344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653429_1654356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654468_1655248_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655238_1656435_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656465_1657416_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657637_1658327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658391_1659147_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659198_1660191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660200_1661154_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661269_1662232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663633_1664062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664058_1665009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665302_1666040_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666463_1667651_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667654_1668035_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669754_1670726_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670739_1671453_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671457_1672375_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672481_1672778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672876_1673827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1831594	1890864	4106379	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831594_1832545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832669_1833479_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1833679_1834630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835903_1837121_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838177_1839080_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839156_1840029_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840159_1840528_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840585_1841632_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841827_1843084_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843088_1844426_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844575_1845532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845634_1846567_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846682_1847003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846995_1847355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847402_1848977_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849029_1849974_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849991_1850822_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850814_1852449_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852445_1853801_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854707_1856285_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856288_1857563_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857660_1858035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859750_1860884_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860921_1861527_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861523_1862342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862413_1865038_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865024_1865279_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865345_1865927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866230_1866491_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866656_1867280_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867279_1868053_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868049_1869258_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869283_1869757_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869830_1870781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870879_1871830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871928_1873278_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874043_1874799_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874891_1877774_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878096_1878522_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878549_1879698_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879694_1880201_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880207_1881503_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881561_1882848_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882849_1883488_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883490_1884651_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884677_1886033_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886036_1887107_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887245_1887482_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887569_1888676_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888641_1889946_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889964_1890864_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1901104	1944378	4106379	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901104_1902055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902153_1903104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903303_1904389_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904404_1905166_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1905162_1906122_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1906184_1906685_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906717_1907461_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907556_1907796_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907809_1907962_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908047_1909538_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909629_1910568_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910564_1910741_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910743_1911406_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913027_1913171_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913167_1914142_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914036_1914291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914308_1915259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915255_1916530_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916633_1917827_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917823_1918477_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918473_1919910_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919897_1920257_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921071_1921212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921229_1922180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922176_1924042_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924299_1925820_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925907_1926558_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1927506_1928802_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928823_1929708_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929806_1930682_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930671_1931028_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931158_1932133_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932262_1932442_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932539_1933064_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933074_1933911_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934023_1934395_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934391_1934943_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934958_1936650_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936698_1937379_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937626_1938091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938260_1939190_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939202_1939850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939923_1941741_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941824_1942775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943427_1944378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	1974151	2038520	4106379	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974151_1975102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975323_1976274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976372_1977338_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977475_1978375_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980969_1982457_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982467_1983664_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983736_1985056_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985052_1985928_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985958_1987107_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987124_1987439_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987460_1988183_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988182_1989001_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989005_1989533_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989538_1990795_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991153_1992293_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992370_1993243_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994113_1995064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995023_1995659_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996018_1997341_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997659_1998481_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999905_2000478_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000517_2002347_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002309_2003368_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003405_2003867_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003951_2004698_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006188_2009419_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009485_2010817_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011069_2011444_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011546_2012725_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012735_2013326_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013436_2014243_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014268_2015063_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016063_2017038_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017196_2017709_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017865_2018837_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020581_2021388_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2021384_2022686_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2022636_2023401_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023514_2024285_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024369_2025557_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025629_2026004_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2026104_2027367_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027363_2028221_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028393_2029395_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029846_2030797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2032312_2033512_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033880_2034117_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034180_2034348_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2034461_2036267_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2036520_2037471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037569_2038520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	2170049	2219702	4106379	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170049_2171000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171098_2173093_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173152_2174118_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174107_2176969_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176971_2177478_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177582_2178791_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178792_2179731_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179892_2180366_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180362_2181313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181423_2181864_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181992_2183222_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183260_2184082_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184135_2185287_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185378_2185867_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188417_2190967_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191037_2193611_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193876_2194077_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194108_2194270_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194327_2194666_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194814_2195765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196539_2197208_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2197189_2199205_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2199387_2200137_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200149_2201013_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201016_2202432_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202565_2203294_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203432_2203633_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203808_2204207_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204230_2205631_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205749_2206502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2206790_2207390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207494_2208274_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208270_2209155_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209172_2209952_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209936_2210695_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2210820_2211468_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211735_2212752_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212849_2213890_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214024_2215317_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216676_2217060_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217077_2217665_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217702_2218653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218751_2219702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	2476006	2534250	4106379	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2476006_2476957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477436_2478093_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478107_2479775_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479777_2480407_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480618_2481713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481857_2482670_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2482673_2484377_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2484427_2485558_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485744_2486821_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486902_2487553_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487567_2488971_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489254_2490073_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2490069_2490774_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491673_2492789_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492822_2493197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493219_2494377_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494389_2494623_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495257_2498227_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498241_2498451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498602_2499232_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2499228_2501319_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501342_2502023_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502019_2502580_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502586_2503684_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503836_2504430_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504426_2505719_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505732_2506275_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506284_2507121_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507154_2508216_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508257_2509310_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509325_2509628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509769_2510720_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510737_2510902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510898_2512593_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512589_2513675_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513722_2514622_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514632_2515277_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516298_2519541_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519551_2520706_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520932_2521895_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521993_2522944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523042_2523993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524002_2524692_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524751_2525189_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525234_2526128_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526175_2527348_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527344_2528499_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2528695_2529046_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529035_2529470_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529486_2530437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530584_2531052_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531032_2532190_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532255_2533182_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533299_2534250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	2576528	2643028	4106379	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576528_2577479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577848_2578421_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578423_2579434_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579426_2579927_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579937_2580279_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2580290_2581082_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581098_2581368_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581390_2582179_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582225_2583242_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583458_2584901_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585079_2586699_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586819_2588640_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588718_2590251_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2590284_2591931_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592000_2593023_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593040_2594174_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594176_2594866_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594865_2595651_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595694_2596459_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596497_2597919_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597984_2598689_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598736_2599156_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599168_2599576_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599759_2600470_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600596_2600887_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600904_2601387_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605892_2607047_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607352_2608369_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608615_2609404_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609470_2610151_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610147_2610918_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611016_2611967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612022_2612940_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612950_2614129_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614148_2615144_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616732_2617341_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617328_2618369_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618386_2619349_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619345_2620539_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620535_2621333_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621358_2622345_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622363_2624403_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2624604_2625285_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625298_2626210_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626206_2626785_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626923_2627829_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627836_2631256_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631243_2633844_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634799_2635432_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635825_2636584_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2636580_2637783_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637970_2638921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639828_2640974_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640960_2641716_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641832_2642012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642077_2643028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	2671143	2708555	4106379	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2671143_2672094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672192_2673143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673235_2673775_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673881_2674226_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674283_2675732_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675919_2676255_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677882_2679061_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679143_2679644_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679753_2680455_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2680466_2680931_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2680945_2681221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2681217_2681994_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682022_2682850_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682975_2683446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683572_2684466_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684513_2685695_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685707_2686523_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2686656_2687184_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687180_2687678_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687825_2688203_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688424_2689375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689473_2690085_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690319_2691447_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691557_2692646_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692698_2693550_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693569_2694451_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694627_2695941_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696151_2696985_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696981_2697563_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697916_2698867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698882_2699998_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700100_2701027_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701026_2702265_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702261_2703029_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703029_2703731_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703812_2704259_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2705148_2705787_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706555_2707506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707604_2708555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	2807682	2862199	4106379	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807682_2808633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808961_2809567_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809620_2810934_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811008_2811479_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811478_2812267_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812277_2813930_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814017_2814968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816129_2816636_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816632_2817397_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817412_2817697_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817761_2818751_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818922_2819852_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819823_2820510_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820543_2821089_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821133_2822399_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822395_2823298_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824479_2825424_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825518_2827036_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827077_2828706_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828813_2829695_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832807_2833182_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833206_2833545_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833588_2835223_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835261_2836608_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2836715_2838137_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838206_2838791_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838893_2839844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839978_2841085_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841095_2842193_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842337_2843543_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843549_2844071_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844067_2844559_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844555_2844807_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844787_2845273_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845408_2848870_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848887_2849772_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849781_2850213_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850459_2850963_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851040_2852441_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852515_2853391_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853387_2854395_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854862_2855168_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855258_2855849_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856039_2857056_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857247_2859584_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859666_2860101_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860199_2861150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861248_2862199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	2870224	2927011	4106379	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2870224_2871175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872881_2873148_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873855_2874194_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878748_2879351_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879447_2880737_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880794_2881526_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881522_2882326_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882322_2883411_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883407_2884337_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884485_2885631_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885652_2886603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886620_2886779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886933_2890755_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890911_2891580_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891584_2893258_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893276_2894596_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894600_2896916_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896971_2899140_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899136_2904326_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904415_2904730_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904957_2905203_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905297_2905816_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905915_2907121_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907236_2908634_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908750_2909329_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909401_2910793_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910960_2911911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912191_2912812_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912808_2913222_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913218_2914262_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914317_2914506_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914515_2915280_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915370_2916027_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916118_2916877_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916902_2918504_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918704_2919709_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919809_2920073_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920190_2920967_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921557_2922508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924891_2926004_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926060_2927011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	2957397	3001088	4106379	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_010929591.1|2957397_2958348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2958365_2958515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958468_2959365_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961642_2963868_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964032_2965121_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965077_2965731_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965778_2966576_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967107_2968058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2968132_2969287_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969343_2970294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970392_2970698_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970726_2971161_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971162_2972407_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972403_2973114_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973128_2974040_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974402_2974807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974803_2975262_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2975268_2976177_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2976173_2977040_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977026_2977854_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977864_2978992_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980069_2981308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981349_2982612_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982618_2983371_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983422_2983608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983883_2984348_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984379_2985039_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985183_2987292_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987288_2988239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988342_2988963_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2989054_2989807_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990941_2992066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992111_2992480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992721_2993672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994707_2995250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995447_2995618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995635_2996586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996582_2997548_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997617_2998454_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998966_3000076_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3000137_3001088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	3185506	3248787	4106379	protease,transposase	Xanthomonas_phage(33.33%)	52	NA	NA
WP_005012067.1|3185506_3186457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3186465_3187014_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3187010_3187619_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3187801_3188272_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3188278_3189538_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3189590_3190403_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3190517_3191072_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_023998380.1|3191081_3192071_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3192250_3192970_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3192986_3195722_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3195901_3196888_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3197016_3197424_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3197535_3198459_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3198687_3199872_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3200060_3201287_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3201291_3202113_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3202125_3203076_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3203072_3204479_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3204475_3205549_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3205545_3206739_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3206735_3208268_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3208264_3209434_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3209423_3212261_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3212257_3213988_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3213984_3214263_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3214262_3215357_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3215365_3215794_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3216596_3218405_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3218444_3219524_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3219520_3220714_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3220863_3221142_+	SWIB/MDM2 domain-containing protein	NA	NA	NA	NA	NA
WP_003814593.1|3221470_3221863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3228587_3229064_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3229216_3230329_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3230396_3230957_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3230980_3231313_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3231296_3232985_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3233104_3233893_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_003814611.1|3235994_3236306_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236305_3236836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3236792_3236981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3236998_3237949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238238_3238703_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3238717_3240223_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3240479_3242084_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242139_3243045_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3243485_3244436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3244534_3245485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245566_3246148_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246572_3246878_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246891_3248226_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3248247_3248787_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 29
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	3267210	3314802	4106379	tRNA,holin,transposase	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3267210_3267546_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267545_3268388_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3268486_3269437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269501_3270473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270536_3271556_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271557_3272931_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3273208_3273889_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3273901_3276028_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3276024_3277119_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3277133_3278393_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3278412_3280137_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3280375_3281128_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3281266_3282217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282529_3284008_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3284014_3285124_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3285135_3285816_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285837_3286593_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286728_3287613_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287700_3288282_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288542_3288842_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3288993_3289473_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3290192_3291629_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291625_3292129_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3292144_3293095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3293622_3294396_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3294528_3295539_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3295690_3297346_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3297400_3297742_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3297755_3299195_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3299327_3300143_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3300106_3300319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3300336_3301287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302674_3303622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303848_3304589_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3304674_3305625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3305642_3305798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3307066_3308638_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308970_3310824_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3310868_3313433_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313851_3314802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	3381032	3434773	4106379	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381032_3381983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382387_3383032_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383056_3383641_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383741_3384359_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384361_3386077_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386073_3386382_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386398_3387016_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387060_3387363_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387463_3388318_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388505_3388730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388899_3389172_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389589_3389997_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390366_3391161_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391261_3392497_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392565_3393582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393593_3394970_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394966_3396163_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396159_3397698_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397694_3398954_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400894_3401845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402611_3403706_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403698_3405033_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404986_3405670_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405695_3406859_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406855_3407857_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407856_3408729_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408725_3409475_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409471_3410263_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410259_3411399_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411674_3412460_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412493_3413276_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413279_3413669_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414808_3415672_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415707_3416796_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416792_3417743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418096_3421075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422001_3422880_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424828_3425779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425775_3426243_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426285_3427056_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427076_3427877_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427887_3429297_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429391_3430177_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430416_3431433_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431540_3431933_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432070_3432751_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432755_3433727_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433822_3434773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	3440928	3500226	4106379	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440928_3442692_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442803_3443682_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443794_3444610_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444613_3444865_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444949_3445966_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446296_3446518_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448878_3449796_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450293_3451502_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451581_3453153_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453270_3454206_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454394_3455339_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455906_3461624_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461629_3462757_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462812_3463439_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463710_3464727_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464822_3465533_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465529_3466519_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466614_3468246_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468248_3468986_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469141_3470014_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470282_3471503_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471499_3472159_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472230_3472863_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472892_3473411_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473421_3474531_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474577_3475432_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475433_3476336_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477558_3478509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480263_3481253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481249_3481408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481428_3482217_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482213_3483245_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483263_3483827_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483882_3485403_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485666_3486371_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486378_3487116_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487221_3487596_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487638_3488928_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488924_3490094_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490090_3490930_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490989_3491925_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491937_3492888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492986_3493949_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493980_3494340_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494464_3495367_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495368_3497141_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497175_3497952_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499275_3500226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	3515164	3573237	4106379	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515164_3516115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516243_3517377_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517420_3518326_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518328_3520029_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520025_3520946_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520953_3521931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521989_3523024_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3524998_3525235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525361_3526225_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526313_3527135_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527214_3527952_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527948_3528941_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529054_3529717_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529761_3530910_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533233_3534184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534524_3535475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535573_3536524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536820_3537318_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537360_3539136_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539143_3540010_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540016_3540751_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541920_3542715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543004_3543595_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543628_3544957_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545031_3546177_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546288_3547287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547249_3547684_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549200_3550085_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550081_3551287_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551283_3552144_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552256_3554047_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554087_3554753_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554753_3555062_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555227_3556514_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557947_3558898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560849_3562064_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562169_3563159_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563155_3563764_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563776_3564406_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564402_3565023_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565054_3565846_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566697_3567153_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567171_3568098_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568151_3569438_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570368_3571241_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571237_3572188_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572286_3573237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP013093	Bordetella pertussis strain J194 chromosome, complete genome	4106379	4028550	4088740	4106379	transposase	Planktothrix_phage(28.57%)	52	NA	NA
WP_010931661.1|4028550_4029501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029670_4030897_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031096_4031963_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031955_4032918_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033018_4033969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034067_4035018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035014_4036508_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036504_4039612_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039608_4042677_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042673_4043924_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044104_4044866_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044898_4045549_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045551_4046391_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046631_4047375_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047457_4047805_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047902_4048745_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048789_4049677_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049703_4049892_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049989_4051447_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051433_4052960_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052978_4053446_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053445_4054468_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054588_4055308_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055383_4056484_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056485_4057676_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057795_4058812_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059130_4059802_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059798_4060707_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060918_4061566_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065417_4066494_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066504_4067314_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067403_4068177_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068177_4068342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068359_4069310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069198_4070221_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070210_4071365_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071404_4072817_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072941_4073808_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073809_4074634_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074630_4075392_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075472_4076159_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076332_4077340_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077336_4078116_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078173_4079436_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079982_4080933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816030.1|4081064_4082504_+	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	2.4e-106
WP_010927255.1|4082564_4083446_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931681.1|4083442_4084258_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010931682.1|4084259_4085303_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003816037.1|4085346_4086270_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_019248557.1|4086399_4087599_-	amidohydrolase	NA	NA	NA	NA	NA
WP_005013747.1|4087789_4088740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
