The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	27282	70035	4103283	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69084_70035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	77633	136107	4103283	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82821_83526_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85480_86668_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86730_87990_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89109_90210_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90792_91845_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96208_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97338_98178_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101865_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102807_103083_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103090_103753_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132699_132984_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	164893	303020	4103283	transposase,protease,tRNA	Klosneuvirus(10.53%)	117	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225621_226317_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226333_227746_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227858_229289_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229330_231244_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231562_232129_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232219_233221_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287021_287648_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287670_288597_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288605_290192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290188_291193_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291392_292253_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292284_293286_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293356_294166_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294243_296103_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296231_297434_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297547_298429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299931_300492_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300551_301502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301693_301981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302069_303020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	390856	448365	4103283	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	589370	650561	4103283	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590796_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622979_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638047_639400_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646243_647116_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	655885	702076	4103283	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690807_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	708242	762172	4103283	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728687_731060_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731169_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736013_736886_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737226_737445_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737484_738864_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738905_740303_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740342_741995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741998_742883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742882_743824_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743902_745522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745688_746504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746571_747141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747141_748092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749877_751143_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751300_752251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756767_757292_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757251_758202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758423_760619_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760691_761099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	884761	952737	4103283	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893412_895644_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902310_903030_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903150_905310_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905400_905670_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905758_905965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905963_906491_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906509_907289_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907456_908473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908545_909037_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909047_910763_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911926_912877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912873_914706_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915104_915764_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916291_916972_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917253_917970_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917984_919286_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921430_924319_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924542_925895_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925923_926445_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926441_927896_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927930_928179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928284_929160_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929185_930241_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930253_931045_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931077_932448_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933624_934575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934627_934849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935008_935221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935340_936459_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936555_936771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936964_937216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937328_938279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938275_938659_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938713_940528_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940677_941505_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941550_942531_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942527_942740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942736_943918_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944081_944816_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944817_947430_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947565_949479_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950094_950505_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950602_951688_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951786_952737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	996266	1068782	4103283	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|996266_997217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997321_998371_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998508_999525_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001033_1001606_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001665_1002397_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002448_1003366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1007348_1008731_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008800_1009052_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009197_1009812_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009998_1012059_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012188_1013040_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013036_1013663_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013659_1015414_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015706_1018412_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018424_1020086_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020098_1021889_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022110_1023286_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023328_1024279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024377_1025118_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025312_1027349_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027366_1028377_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028494_1029688_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029717_1030491_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030487_1031678_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031703_1032642_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032638_1034987_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035141_1035783_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037112_1037265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037296_1037845_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037863_1038349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038526_1039465_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039467_1039785_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039830_1040775_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042455_1043106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043159_1043495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043491_1044352_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044368_1044650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044723_1044987_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045230_1046181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046479_1047217_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047652_1047976_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048010_1048571_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048691_1049567_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049579_1050527_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050628_1050922_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050948_1053006_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053020_1053521_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053594_1055301_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056164_1057217_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057269_1057659_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057667_1058300_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058399_1059416_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060246_1061254_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061250_1062894_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062890_1063778_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063918_1064392_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064381_1065404_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065400_1066828_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067765_1068782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1072535	1134611	4103283	transposase,holin,tRNA	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1072535_1073672_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073668_1074742_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074899_1076336_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076426_1077068_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077403_1078420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080462_1081413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095909_1096047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109445_1109697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112677_1113385_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117437_1118751_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120740_1121469_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121450_1124300_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124512_1125463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125630_1126455_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126454_1127333_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128237_1129353_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129381_1130176_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130172_1132038_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132116_1132749_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132745_1133048_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133090_1134611_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1152182	1218701	4103283	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152182_1153979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153978_1154947_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155016_1155862_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155929_1156484_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156530_1157481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157579_1158212_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166534_1169405_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169450_1170665_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170894_1172322_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172419_1173511_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173523_1174282_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174369_1175272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175268_1176219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176348_1177332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177386_1178109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179587_1180943_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181023_1183399_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183563_1185639_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185700_1186495_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186602_1187565_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187552_1188308_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188415_1190053_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190120_1190858_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190960_1191536_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191708_1192245_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192277_1192592_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192607_1193453_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193491_1194871_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194948_1195830_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195928_1196879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196875_1197286_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197393_1198248_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198240_1199203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199248_1200373_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200478_1201357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201481_1202261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202414_1203836_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204270_1205968_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206194_1207136_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207462_1208209_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208216_1209143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209264_1210182_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210221_1211175_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211199_1211778_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213451_1214060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214137_1214491_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214574_1215564_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215766_1216717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216803_1217754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217750_1218701_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1269677	1326888	4103283	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1269677_1270628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274374_1274986_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275208_1276669_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276765_1278358_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278711_1278969_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278970_1280311_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280406_1281096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281108_1282539_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284263_1285085_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285095_1286667_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286695_1287673_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287699_1288503_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288499_1289294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289301_1290537_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290550_1290964_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291713_1292664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293285_1295013_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295124_1296483_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296775_1297726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297766_1298837_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298859_1299738_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299909_1300881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1301043_1301886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302047_1302728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302721_1303891_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303887_1304919_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304986_1306204_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306238_1307771_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307851_1308475_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308505_1309117_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309152_1309623_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310054_1311059_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311095_1312610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312613_1313573_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313601_1314405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314406_1316041_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316124_1317186_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317384_1317654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317657_1318182_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318597_1319548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319544_1320579_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320687_1321326_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321620_1321848_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321970_1322684_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322928_1323879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1324018_1324264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324378_1325827_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929584.1|1325937_1326888_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1417121	1470301	4103283	transposase,tRNA	Salmonella_phage(22.22%)	45	NA	NA
WP_005013747.1|1417121_1418072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418238_1418592_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418604_1418967_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1419008_1419434_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419636_1420893_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421091_1422072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422221_1423463_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423561_1424512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424520_1425216_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1428037_1428637_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428647_1430813_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430836_1432621_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432620_1432710_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433404_1433677_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433676_1435743_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435739_1436690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1436805_1437138_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1437134_1437821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1437807_1438767_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1438799_1441169_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1441168_1441801_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1441902_1443243_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1443289_1444645_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1444935_1445172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1445359_1445677_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1445949_1446465_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1446735_1447491_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1447829_1448036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1448043_1448703_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1448997_1451202_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1451312_1452536_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1452658_1453633_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1453700_1454894_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1454908_1455709_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1455705_1457562_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1457558_1458164_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1458182_1459568_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1460293_1461520_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1461608_1462391_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1462489_1463440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1463466_1464240_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1464251_1465493_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1467274_1468225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1468256_1469354_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1469350_1470301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1512150	1580236	4103283	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1512150_1512639_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1512756_1513335_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1513440_1513809_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1513907_1514858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1514864_1515977_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1516663_1517866_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1518069_1520730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1520742_1524147_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1524814_1527040_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1527086_1527413_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1527463_1528072_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1528170_1529121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1529190_1529955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1529951_1530488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1530654_1531506_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1531565_1532192_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1532188_1533139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1533237_1534350_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1534339_1535341_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1535446_1536958_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1536954_1538259_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1538370_1538931_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1539198_1539753_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1540208_1540424_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1540678_1543276_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1543272_1544460_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1545118_1545733_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1545821_1546943_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1546960_1547866_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1548758_1549709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1549890_1550643_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1550711_1551371_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1551367_1552096_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1552108_1554388_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1554412_1554616_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1554657_1555290_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1555425_1556343_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1556339_1557053_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1557290_1558061_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1558065_1558665_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1558909_1560400_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1560458_1560743_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1561308_1562235_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1562371_1563112_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1563278_1564655_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1564836_1565742_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1567393_1569196_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1569313_1569964_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1570062_1571013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1571034_1572255_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1572440_1573853_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1573916_1574984_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1574983_1576471_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1576480_1577425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1577584_1578283_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1578360_1579266_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1579285_1580236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1616185	1671776	4103283	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1616185_1617136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1617194_1617968_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1617960_1619517_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1619513_1620464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1621790_1622393_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1622632_1623334_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1623327_1624110_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1624294_1625245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1625343_1626081_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1626270_1627029_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1627075_1628065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1628242_1629211_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1630750_1631719_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1631727_1632669_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1633142_1634153_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1634143_1635658_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1635654_1637001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1637003_1638038_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1638087_1639713_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1640265_1641216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1641320_1642268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1642321_1644136_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1644128_1644803_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1644932_1648007_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1648020_1648320_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1648634_1649258_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1649501_1650371_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1650348_1651293_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1651378_1652305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1652417_1653197_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1653187_1654384_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1654414_1655365_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1655586_1656276_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1656340_1657096_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1657147_1658140_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1658149_1659103_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1659218_1660181_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1661582_1662011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1662007_1662958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1663251_1663974_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1664412_1665600_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1665603_1665954_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1667703_1668675_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1668688_1669402_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1669406_1670324_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1670430_1670727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1670825_1671776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1829543	1960604	4103283	transposase,protease,tRNA	Klosneuvirus(18.75%)	119	NA	NA
WP_005013747.1|1829543_1830494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1830618_1831428_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1831628_1832579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1833852_1835070_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1836126_1837029_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1837105_1837978_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1838108_1838477_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1838534_1839581_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1839776_1841033_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1841037_1842375_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1842524_1843481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1843583_1844516_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1844631_1844952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1844944_1845304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1845351_1846926_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1846978_1847923_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1847940_1848771_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1848763_1850398_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1850394_1851750_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1852656_1854234_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1854237_1855512_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1855609_1855984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1857699_1858833_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1858870_1859476_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1859472_1860291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1860362_1862987_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1862973_1863228_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1863294_1863876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1864179_1864440_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1864605_1865229_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1865228_1866002_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1865998_1867207_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1867232_1867706_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1867779_1868730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1868828_1870178_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1870943_1871699_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1871791_1874674_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1874996_1875422_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1875449_1876598_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1876594_1877101_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1877116_1878403_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1878452_1879748_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1879749_1880388_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1880393_1881551_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1881577_1882933_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1882936_1884007_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1884145_1884382_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1884469_1885576_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1885541_1886846_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1886864_1887764_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1887947_1889105_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1889181_1890477_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1890590_1891130_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1891407_1891620_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1891639_1893670_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1893695_1893890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1894355_1896638_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1897047_1897347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1897631_1898045_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1898004_1898955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1899053_1900004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1900203_1901289_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1901304_1902066_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1902062_1902986_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1903084_1903609_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1903617_1904361_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1904456_1904696_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1904709_1904862_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1904947_1906438_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1906529_1907468_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1907464_1907641_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1907643_1908306_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1909927_1910071_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1910067_1911042_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1911208_1912159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1912155_1913430_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1913533_1914727_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1914723_1915377_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1915373_1916810_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1916797_1917157_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1917971_1918112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1918129_1919080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1920125_1921991_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1922248_1923769_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1923856_1924507_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1925455_1926751_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1926772_1927657_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1927755_1928631_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1928620_1928977_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1929107_1930082_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1930211_1930391_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1930488_1931013_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1931023_1931860_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1931972_1932344_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1932340_1932892_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1932907_1934599_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1934647_1935328_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1935575_1936040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1936209_1937139_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1937151_1937799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1937872_1939690_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1939773_1940724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1941376_1942327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1942345_1942693_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1942721_1944161_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1944179_1944575_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1944749_1945358_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1945370_1946189_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1946140_1947115_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1947143_1948205_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1948201_1950418_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1950431_1950890_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1951047_1951392_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1951548_1952454_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1952540_1953554_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1955533_1956550_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1956692_1958045_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1958219_1958516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1959653_1960604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	1972100	2036469	4103283	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1972100_1973051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1973272_1974223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1974321_1975287_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1975424_1976324_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1978918_1980406_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1980416_1981613_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1981685_1983005_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1983001_1983877_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1983907_1985056_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1985073_1985388_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1985409_1986132_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1986131_1986950_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1986954_1987482_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1987487_1988744_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1989102_1990242_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1990319_1991192_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1992062_1993013_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1992972_1993608_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1993967_1995290_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1995608_1996430_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1997854_1998427_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|1998466_2000296_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2000258_2001317_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2001354_2001816_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2001900_2002647_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2004137_2007368_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2007434_2008766_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2009018_2009393_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2009495_2010674_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2010684_2011275_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2011385_2012192_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2012217_2013012_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2014012_2014987_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2015145_2015658_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2015814_2016786_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2018530_2019337_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2019333_2020635_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2020585_2021350_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2021463_2022234_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2022318_2023506_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2023578_2023953_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2024053_2025316_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2025312_2026170_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2026342_2027344_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2027795_2028746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2030309_2031461_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2031829_2032066_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2032129_2032297_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2032410_2034306_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2034469_2035420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2035518_2036469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	2167998	2225277	4103283	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2167998_2168949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2169047_2171042_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2171101_2172067_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2172056_2174918_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2174920_2175427_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2175531_2176740_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2176741_2177680_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2177841_2178315_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2178311_2179262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2179372_2179813_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2179941_2181171_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2181209_2182031_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2182084_2183236_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2183327_2183816_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2186366_2188916_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2188986_2191560_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2191825_2192026_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2192057_2192219_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2192276_2192615_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2192763_2193714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2194488_2195157_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2195138_2197094_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2197336_2198086_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2198098_2198962_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2198965_2200381_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2200514_2201243_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2201381_2201582_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2201757_2202156_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2202179_2203580_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2203698_2204451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2204739_2205417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2205443_2206223_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2206219_2207104_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2207121_2207901_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2207885_2208644_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2208781_2209417_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2209684_2210701_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2210798_2211839_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2211973_2213266_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2214625_2215009_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2215026_2215614_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2215651_2216602_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2216700_2217261_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2217257_2217803_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2217998_2219027_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2219067_2220408_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2220516_2221521_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2221627_2224228_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2224326_2225277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	2472909	2531153	4103283	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2472909_2473860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2474339_2474996_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2475010_2476678_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2476680_2477310_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2477521_2478616_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2478760_2479573_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2479576_2481160_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2481330_2482461_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2482647_2483724_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2483805_2484456_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2484470_2485874_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2486157_2486976_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2486972_2487677_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2488576_2489692_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2489725_2490100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2490122_2491280_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2491292_2491526_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2492160_2495130_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2495144_2495354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2495505_2496135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2496131_2498189_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2498245_2498926_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2498922_2499483_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2499489_2500587_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2500739_2501333_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2501329_2502622_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2502635_2503178_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2503187_2504024_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2504057_2505119_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2505160_2506213_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2506228_2506531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2506672_2507623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2507801_2509496_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2509492_2510578_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2510625_2511525_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2511535_2512180_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2513201_2516444_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2516454_2517609_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2517835_2518798_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_010931070.1|2518896_2519847_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2519945_2520896_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2520905_2521595_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2521654_2522092_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2522137_2523031_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2523078_2524251_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2524247_2525402_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2525598_2525949_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2525938_2526373_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2526389_2527340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2527487_2527955_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2527935_2529093_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2529158_2530085_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2530202_2531153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	2573431	2639931	4103283	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2573431_2574382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2574751_2575324_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2575326_2576337_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2576329_2576830_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2576840_2577182_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2577250_2577985_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2578001_2578271_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2578293_2579082_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2579128_2580145_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2580361_2581804_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2581982_2583602_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2583722_2585543_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2585621_2587154_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2587187_2588834_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2588903_2589926_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2589943_2591077_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2591079_2591769_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2591768_2592554_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2592597_2593362_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2593400_2594822_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2594887_2595592_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2595639_2596059_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2596071_2596479_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2596662_2597373_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2597499_2597790_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2597807_2598290_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2602795_2603950_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2604255_2605272_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2605518_2606307_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2606373_2607054_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2607050_2607821_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2607919_2608870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2608925_2609843_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2609853_2611032_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2611051_2612047_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2613635_2614244_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2614231_2615272_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2615289_2616252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2616248_2617442_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2617438_2618236_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2618261_2619248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2619266_2621306_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2621507_2622188_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2622201_2623113_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2623109_2623688_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2623826_2624732_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2624739_2628159_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2628146_2630747_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2631702_2632335_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2632728_2633487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2633483_2634686_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2634873_2635824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2636731_2637877_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2637863_2638619_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2638735_2638915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2638980_2639931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	2668046	2705458	4103283	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2668046_2668997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2669095_2670046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2670138_2670678_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2670784_2671129_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2671186_2672635_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2672822_2673158_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2674785_2675964_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2676046_2676547_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2676656_2677358_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2677369_2677834_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2677848_2678124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2678120_2678897_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2678925_2679753_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2679878_2680349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2680475_2681369_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2681416_2682598_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2682610_2683426_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2683559_2684087_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2684083_2684581_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2684728_2685106_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2685327_2686278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2686376_2686988_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2687222_2688350_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2688460_2689549_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2689601_2690453_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2690472_2691354_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2691530_2692844_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2693054_2693888_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2693884_2694466_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2694819_2695770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2695785_2696901_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2697003_2697930_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2697929_2699168_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2699164_2699932_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2699932_2700634_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2700715_2701162_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2702051_2702690_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2703458_2704409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2704507_2705458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	2804585	2859102	4103283	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2804585_2805536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805864_2806470_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806523_2807837_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807911_2808382_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808381_2809170_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809180_2810833_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810920_2811871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2813032_2813539_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813535_2814300_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814315_2814600_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814664_2815654_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815825_2816755_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816726_2817413_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817446_2817992_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818036_2819302_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819298_2820201_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821382_2822327_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822421_2823939_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823980_2825609_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825716_2826598_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829710_2830085_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830109_2830448_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830491_2832126_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832164_2833511_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833618_2835040_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835109_2835694_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835796_2836747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836881_2837988_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837998_2839096_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839240_2840446_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840452_2840974_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840970_2841453_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841458_2841710_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841690_2842176_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842311_2845773_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845790_2846675_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846684_2847116_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847362_2847866_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847943_2849344_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849418_2850294_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850290_2851298_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851765_2852071_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852161_2852752_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852942_2853959_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2854150_2856487_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2856569_2857004_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2857102_2858053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858151_2859102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	2867127	2923912	4103283	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2867127_2868078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869784_2870051_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870758_2871097_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875649_2876252_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876348_2877638_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877695_2878427_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878423_2879227_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879223_2880312_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880308_2881238_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881386_2882532_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882553_2883504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2883834_2887656_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887812_2888481_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888485_2890159_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890177_2891497_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891501_2893817_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893872_2896041_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2896037_2901218_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901316_2901631_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901858_2902104_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902198_2902717_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902816_2904022_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904137_2905535_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905651_2906230_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906302_2907694_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907861_2908812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909092_2909713_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909709_2910123_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910119_2911163_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911218_2911407_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911416_2912181_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912271_2912928_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2913019_2913778_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913803_2915405_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915605_2916610_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916710_2916974_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917091_2917868_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918458_2919409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921792_2922905_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2922961_2923912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	2954298	2997989	4103283	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2954298_2955249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2955369_2956266_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958543_2960769_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960933_2962022_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961978_2962632_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962679_2963477_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2964008_2964959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965039_2966188_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966244_2967195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967293_2967599_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967627_2968062_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968063_2969308_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969304_2970015_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2970029_2970941_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971303_2971708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971704_2972163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972169_2973078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973074_2973941_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973927_2974755_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974765_2975893_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976970_2978209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978250_2979513_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979519_2980272_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980323_2980509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980784_2981249_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981280_2981940_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982084_2984193_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984189_2985140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985243_2985864_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2985967_2986708_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987842_2988967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2989012_2989381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989622_2990573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991608_2992151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992348_2992519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992536_2993487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2993483_2994392_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994518_2995355_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995867_2996977_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|2997038_2997989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	3377934	3431675	4103283	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3377934_3378885_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379289_3379934_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379958_3380543_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380643_3381261_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381263_3382979_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382975_3383284_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383300_3383918_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383962_3384265_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384365_3385220_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385407_3385632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385801_3386074_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386491_3386899_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387268_3388063_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388163_3389399_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389467_3390484_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390495_3391872_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391868_3393065_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393061_3394600_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394596_3395856_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397796_3398747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399513_3400608_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400600_3401935_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401888_3402572_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3402597_3403761_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3403757_3404759_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404758_3405631_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405627_3406377_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406373_3407165_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407161_3408301_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408576_3409362_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409395_3410178_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410181_3410571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411710_3412574_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412609_3413698_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413694_3414645_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414998_3417977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418903_3419782_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421730_3422681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422677_3423145_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423187_3423958_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423978_3424779_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424789_3426199_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426293_3427079_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427318_3428335_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428442_3428835_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428972_3429653_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429657_3430629_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430724_3431675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	3437830	3497128	4103283	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3437830_3439594_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439705_3440584_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440696_3441512_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441515_3441767_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441851_3442868_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443198_3443420_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445780_3446698_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447195_3448404_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448483_3450055_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450172_3451108_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451296_3452241_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452808_3458526_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458531_3459659_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459714_3460341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|3460612_3461629_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461724_3462435_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462431_3463421_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463516_3465148_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465150_3465888_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466043_3466916_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467265_3468405_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468401_3469061_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469132_3469765_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469794_3470313_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470323_3471433_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471479_3472334_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472335_3473238_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474460_3475411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477165_3478155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478330_3479119_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479115_3480147_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480165_3480729_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480784_3482305_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482568_3483273_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483280_3484009_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484123_3484498_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484540_3485830_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485826_3486996_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486992_3487832_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487891_3488827_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488839_3489790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489888_3490851_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490882_3491242_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491366_3492269_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492270_3494043_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494077_3494854_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496177_3497128_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	3512066	3570139	4103283	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512066_3513017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513145_3514279_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514322_3515228_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515230_3516931_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516927_3517848_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517855_3518833_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518891_3519926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521900_3522137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3522263_3523127_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523215_3524037_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524116_3524854_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524850_3525843_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3525995_3526619_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526663_3527812_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530135_3531086_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531426_3532377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532475_3533426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533722_3534220_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534262_3536038_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536045_3536912_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536918_3537653_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538822_3539617_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539906_3540497_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540530_3541859_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541933_3543079_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543190_3544189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544151_3544586_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546102_3546987_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546983_3548189_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548185_3549046_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549158_3550949_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550989_3551634_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551655_3551964_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552129_3553416_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554849_3555800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557751_3558966_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559071_3560061_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560057_3560666_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560678_3561308_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561304_3561925_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561956_3562748_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563599_3564055_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564073_3565000_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565053_3566340_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567270_3568143_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568139_3569090_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569188_3570139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013095	Bordetella pertussis strain J201 chromosome, complete genome	4103283	4002351	4067263	4103283	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4002351_4002837_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4002925_4003063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003055_4004036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004302_4005112_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005151_4005832_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4005825_4006284_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006295_4006658_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4006740_4007424_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007479_4007788_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4007806_4008121_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008117_4010592_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4010599_4011991_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4011987_4012173_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012151_4012853_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4012849_4013671_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4013651_4014776_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4014768_4015788_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4015993_4016884_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017128_4017920_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018002_4018377_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018354_4019764_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4019756_4021139_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021473_4023078_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4023155_4024127_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024137_4025064_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025454_4026405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026574_4027801_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028000_4028867_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028859_4029822_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029922_4030873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030971_4031922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032020_4032971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032967_4034461_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034457_4037565_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037561_4040630_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040626_4041877_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042057_4042810_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4042851_4043496_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4043504_4044485_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044584_4045328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045410_4045758_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045855_4046698_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046742_4047630_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047656_4047845_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047942_4049400_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049386_4050913_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050931_4051399_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051398_4052421_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052541_4053282_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053336_4054437_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054438_4055629_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055748_4056765_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057083_4057755_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057751_4058660_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058871_4059519_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4063379_4064447_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064457_4065267_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4065356_4066130_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4066312_4067263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
