The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	0	59497	4111657	transposase,tRNA	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	70134	123122	4111657	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	165944	226455	4111657	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165944_166895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168338_169241_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169218_169848_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170130_171561_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171594_172224_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173904_174588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175352_176303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177418_177946_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178037_178853_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178913_179648_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182387_183473_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183476_185381_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185377_189052_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189683_190106_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190133_190553_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190581_191028_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191154_191652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191806_194077_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194152_195358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195456_196407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196509_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197141_198035_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198429_199530_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199611_199986_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200045_202910_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203054_203795_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203864_205076_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205104_206073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206686_207637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207793_208117_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208221_209262_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209267_210047_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210092_210389_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210414_210690_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210746_211391_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211390_212077_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212275_213058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213108_213834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213865_215215_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215326_216259_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216716_219512_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220105_222949_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223119_223839_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223877_224426_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224580_225480_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225504_226455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	234388	298128	4111657	transposase,tRNA	Bacillus_phage(20.0%)	53	NA	NA
WP_010929969.1|234388_235339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235425_236376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236372_237323_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237421_238219_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239168_239579_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240600_241344_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241387_242431_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242601_244704_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246114_247071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247089_247581_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247577_248933_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248933_249632_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249628_250330_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250582_251632_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251737_252679_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252675_254565_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254651_255290_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255432_256818_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256748_257285_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257436_258828_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258844_259825_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259960_260944_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261008_261908_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262014_263769_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263776_264901_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264914_265895_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266625_267576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268135_268681_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268806_270384_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270399_271554_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271567_271693_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271689_273441_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273437_275117_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275179_275728_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276870_277149_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278192_279143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|279241_280192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|282636_283371_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|283780_283960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|284150_285464_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|285479_286991_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|286987_288193_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|288388_289366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|289458_289953_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|290082_291141_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|291137_292757_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_157734656.1|292716_292986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929784.1|292944_294048_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|294044_294500_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|294505_295429_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|295518_296178_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|296174_297089_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|297177_298128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	379179	431318	4111657	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	50	NA	NA
WP_005013747.1|379179_380130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|380252_380981_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|381077_382256_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|382252_383086_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|383122_383863_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|383982_385158_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|385154_386108_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|386121_386523_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|386515_387121_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|387208_387373_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|387489_388338_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|388334_388988_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|389004_390288_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|390527_392153_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|392246_392648_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|392672_393107_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|393108_394758_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|394798_395968_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|395970_396834_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|400197_400902_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|400895_401690_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|401686_402652_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|402655_403576_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|403672_404836_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|405058_405949_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|405952_406456_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|406498_407497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|407493_408444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|408532_408820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|409011_409962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|410021_410582_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|412084_412966_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|413079_414282_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|414410_416270_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|416347_417157_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|417227_418229_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|418260_419121_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|419320_420325_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|420321_421908_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|421916_422843_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|422865_423492_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|423590_424541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|424537_425674_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|425727_426504_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|426528_426987_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|427126_427768_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|427832_429215_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|429240_430089_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|430247_430859_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|430868_431318_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
>prophage 6
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	593570	654761	4111657	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|593570_594521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|594996_595887_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|595883_596705_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|596904_597396_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|597414_598488_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|598534_599638_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|599713_600334_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|600354_600864_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|600918_601170_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|601233_602367_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|602374_602761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|602757_605277_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|605705_606044_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|606040_606547_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|606608_607409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|607519_608461_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|608554_610090_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|611769_613620_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|613623_614457_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|614456_615398_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|615649_616621_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|616762_619051_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|619357_620266_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|620320_621286_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|621360_623022_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|623093_623804_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|623770_623935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|623952_624903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|625601_625985_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|626042_626645_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|626662_627064_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|627179_628091_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|628087_628669_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|629463_630198_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|630238_631288_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|631435_632014_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|632400_633378_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|633471_637866_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|638066_638915_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|639073_639886_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|639941_640892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|640990_641791_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|641852_642236_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|642247_643600_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|643887_644217_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|644219_644969_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|645151_646072_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|646118_646331_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|646353_646776_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|646792_647893_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|647989_649507_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|649582_650422_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|650443_651316_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|651406_652501_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|652794_653745_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|653819_654761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	660085	706276	4111657	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|660085_661111_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|661151_661391_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|661460_663050_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|663049_663598_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|663678_664251_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|664269_665181_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|665254_666223_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|666345_667419_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|667423_669244_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|669320_670271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|670359_670695_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|670828_671479_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|671500_672919_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|672988_673744_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|673712_674471_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|674481_675363_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|675379_676087_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|676089_676848_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|677057_678800_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|678792_679317_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|679356_680151_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|680318_681392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681490_682441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|682692_682899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|682970_683582_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|684136_684388_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|684380_685070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|685087_685309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|685326_686277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|686916_687402_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|687388_688666_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|688668_690087_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|690115_691171_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|691176_691419_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|691541_692144_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|692572_693523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|694197_694449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|694511_694994_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|695007_695196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|695195_695591_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|695587_695986_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|695982_696405_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|696412_696913_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|697167_697686_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|697695_698025_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|698042_698333_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|698358_700971_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|700980_701340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|701407_701941_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|701937_702327_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|702319_706276_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	712442	766372	4111657	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|712442_714173_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|714225_714654_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|714656_715337_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|715336_715795_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|715831_716806_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|716822_718139_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|718170_718668_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|718754_719444_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|719443_720493_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|720489_721284_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|721452_721803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|721778_722336_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|723465_724416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|726553_727783_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|727785_729228_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|729332_730478_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|730509_731307_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|731331_732891_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|732887_735260_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|735369_736473_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|736472_737165_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|737308_738010_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|737994_738372_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|739103_740054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|740213_741086_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|741426_741645_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|741684_743064_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|743105_744503_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|744542_746195_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|746198_747083_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|747082_748024_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|748102_749722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|749888_750704_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|750771_751341_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|751341_752292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|752946_754044_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|754077_755343_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|755500_756451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|756694_757285_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|757300_759745_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|759864_760836_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|760967_761492_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|761451_762402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|762623_764819_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|764891_765299_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|765421_766372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	888961	956937	4111657	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|888961_889978_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|890174_891158_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|892756_894145_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|894175_895165_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|895275_896508_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|896789_897590_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|897612_899844_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|900631_901078_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|901099_901846_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|901989_902967_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|903600_904212_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|904205_905423_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|905563_906514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|906510_907230_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|907350_909510_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|909600_909870_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|909958_910165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|910163_910691_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|910709_911489_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|911656_912673_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|912745_913237_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|913247_914963_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|916126_917077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|917073_918906_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|919304_919964_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|920491_921172_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|921453_922170_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|922184_923486_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|925630_928519_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|928742_930095_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|930123_930645_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|930641_932096_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|932130_932379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|932484_933360_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|933385_934441_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|934453_935245_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|935277_936648_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|937824_938775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|938827_939049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|939208_939421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|939540_940659_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|940755_940971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|941164_941416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|941528_942479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|942475_942859_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|942913_944728_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|944877_945705_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|945750_946731_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|946727_946940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|946936_948118_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|948281_949016_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|949017_951630_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|951765_953679_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|954294_954705_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|954802_955888_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|955986_956937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1000466	1072983	4111657	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_010929591.1|1000466_1001417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1001521_1002571_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1002708_1003725_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1005233_1005806_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1005865_1006597_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1006648_1007566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1008373_1011553_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1011549_1012932_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1013001_1013253_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1013398_1014013_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1014199_1016260_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1016389_1017241_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1017237_1017864_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1017860_1019615_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1019907_1022613_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1022625_1024287_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1024299_1026090_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1026311_1027487_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_023852617.1|1027529_1028480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028578_1029319_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029513_1031550_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031567_1032578_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032695_1033889_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033918_1034692_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034688_1035879_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035904_1036843_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036839_1039188_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1039342_1039984_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1041313_1041466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1041497_1042046_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1042064_1042550_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1042727_1043666_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1043668_1043986_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1044031_1044976_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1046656_1047307_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1047360_1047696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1047692_1048553_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1048569_1048851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1048924_1049188_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1049431_1050382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1050680_1051418_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1051853_1052177_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1052211_1052772_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1052892_1053768_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1053780_1054728_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1054829_1055123_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1055149_1057207_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1057221_1057722_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1057795_1059502_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1060365_1061418_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1061470_1061860_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1061868_1062501_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1062600_1063617_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1064447_1065455_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1065451_1067095_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1067091_1067979_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1068119_1068593_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068582_1069605_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069601_1071029_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071966_1072983_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1076736	1139862	4111657	holin,transposase,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1076736_1077873_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077869_1078943_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1079100_1080537_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080627_1081269_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1081605_1082622_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1084562_1085513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1086817_1088239_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1088502_1089219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1089303_1089621_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1089661_1090075_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1090076_1090436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1090478_1092023_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1092106_1092937_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1092971_1094126_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1094168_1095041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1095157_1097446_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1098652_1099117_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1099143_1100094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1100111_1100249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1100461_1101238_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_077108134.1|1101282_1102140_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1102161_1103178_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1103312_1104353_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1104547_1106629_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1106864_1108358_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1108588_1109383_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1109603_1110962_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1110958_1111801_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1111819_1113706_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1113647_1113899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1113943_1114576_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1114594_1115197_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1115348_1116299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1116879_1117587_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1117945_1118932_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1119071_1120085_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1120081_1121032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1121049_1121190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1121144_1121603_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1121639_1122953_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1122970_1123342_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1123338_1124802_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1124942_1125671_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1125652_1128502_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1128714_1129665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1129832_1130657_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1130656_1131535_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1133488_1134604_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1134632_1135427_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1135423_1137289_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1137367_1138000_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1137996_1138299_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1138341_1139862_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1321103	1389590	4111657	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1321103_1322054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1322822_1323461_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1324350_1324797_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1324878_1325580_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1325580_1326348_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1326344_1327583_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1327582_1328509_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1328611_1329727_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1329742_1330693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1331046_1331628_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1331624_1332458_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1332668_1333982_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1334158_1335040_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1335059_1335911_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1335963_1337052_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1337162_1338290_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1338524_1339136_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1339234_1340185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1340406_1340784_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1340931_1341429_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1341425_1341953_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1342086_1342902_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1342914_1344096_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1344143_1345037_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1345163_1345634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1345759_1346587_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1346615_1347392_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1347388_1347664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1347678_1348143_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1348154_1348856_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1348965_1349466_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1349548_1350727_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1352354_1352690_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1352877_1354326_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1354383_1354728_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1354834_1355374_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1355466_1356417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1356434_1356674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1357155_1357587_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1357768_1358173_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1359409_1359733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1359735_1360623_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1360655_1361081_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1361152_1361506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1361745_1362252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1362290_1363622_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1363681_1364497_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1364493_1365348_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1368410_1370954_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1372320_1374075_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1374071_1376192_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1376196_1378392_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1378388_1381730_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1384532_1385483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1385548_1385728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1385844_1386600_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1386586_1387732_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1388639_1389590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1450081	1505569	4111657	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1450081_1451032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1452233_1452680_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1452672_1454148_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1454144_1454900_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1454892_1455903_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1455892_1457569_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1457881_1458214_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1458227_1458623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1458632_1458959_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1458955_1459282_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1459208_1460231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1460227_1460578_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1460625_1461054_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1461061_1462435_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1462575_1462953_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1463215_1464523_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1464583_1465414_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1465410_1465899_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1465940_1467461_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1467504_1467981_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1468784_1471382_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1471411_1472233_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1472959_1473709_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1473892_1474771_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1474868_1475585_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1475599_1476160_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1476326_1477091_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1477110_1477968_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1477964_1479164_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1479203_1480538_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1480590_1482927_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1483052_1483616_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1483624_1484716_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1484787_1485243_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1485243_1486038_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1486034_1487216_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1487202_1487808_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1487804_1488578_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1488589_1489417_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1489578_1491942_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1492009_1492729_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1492852_1493278_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1493312_1494263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1494380_1495307_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1495372_1496530_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1496510_1496978_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1497125_1498076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1498092_1498527_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1498516_1498867_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1499063_1500218_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1500214_1501387_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1501434_1502328_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1502373_1502811_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1502870_1503560_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1503569_1504520_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1504618_1505569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1696497	1760075	4111657	protease,transposase	Klebsiella_phage(11.11%)	49	NA	NA
WP_005012808.1|1696497_1697448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1703926_1706674_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1706694_1707318_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1707329_1707800_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1707811_1708198_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1708259_1708853_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1708843_1709755_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_023853662.1|1709770_1711081_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1711178_1711910_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1712064_1713585_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930859.1|1713645_1715001_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1715035_1716361_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1716542_1717475_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1717485_1718979_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1718975_1719899_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1719901_1721164_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1721183_1722197_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1722269_1722560_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1722589_1723864_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_162268683.1|1723845_1723989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1724006_1724957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1724953_1726591_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1726595_1727435_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023997180.1|1727431_1728439_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1728555_1730130_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1730549_1732094_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1732198_1733266_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1733284_1734871_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1734867_1736058_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1737630_1738119_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1738178_1739036_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1739098_1740049_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1740111_1741101_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1741175_1742057_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1743114_1743966_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1743982_1744552_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1744582_1745446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1745605_1746682_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1746746_1748444_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1748460_1749291_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1749319_1750342_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1750871_1751822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1751920_1752871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1752867_1754190_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1754290_1754608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1754741_1756055_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1756085_1757723_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1758346_1758823_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1759124_1760075_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1799188	1847203	4111657	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1799188_1800139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1800237_1802838_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1802944_1803949_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1804057_1805398_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1805438_1806467_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1806662_1807208_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1807204_1807765_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1807863_1808814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1808851_1809439_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1809456_1809840_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1811199_1812492_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1812626_1813667_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1813764_1814781_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1815048_1815684_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1815821_1816580_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1816564_1817344_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1817361_1818246_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1818242_1819022_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1819048_1819726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1820014_1820767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1820885_1822286_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1822309_1822708_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1822883_1823084_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1823222_1823951_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1824084_1825500_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1825503_1826367_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1826379_1827129_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1827371_1829327_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1829308_1829977_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1830751_1831702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1831800_1832751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1832899_1833238_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1833295_1833457_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1833488_1833689_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1833954_1836528_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1836598_1839148_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1841698_1842187_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1842278_1843430_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1843483_1844305_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1844343_1845573_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1845701_1846142_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1846252_1847203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1908765	1968035	4111657	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1908765_1909716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1909840_1910650_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1910850_1911801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1913074_1914292_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1915348_1916251_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1916327_1917200_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1917330_1917699_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1917756_1918803_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1918998_1920255_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1920259_1921597_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1921746_1922703_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1922805_1923738_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1923853_1924174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1924166_1924526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1924573_1926148_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1926200_1927145_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1927162_1927993_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1927985_1929620_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1929616_1930972_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1931878_1933456_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1933459_1934734_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1934831_1935206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1936921_1938055_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1938092_1938698_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1938694_1939513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1939584_1942209_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1942195_1942450_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1942516_1943098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1943401_1943662_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1943827_1944451_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1944450_1945224_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1945220_1946429_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1946454_1946928_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1947001_1947952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1948050_1949001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1949099_1950449_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1951214_1951970_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1952062_1954945_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1955267_1955693_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1955720_1956869_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1956865_1957372_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1957387_1958674_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1958723_1960019_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1960020_1960659_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1960664_1961822_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1961848_1963204_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1963207_1964278_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1964416_1964653_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1964740_1965847_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1965812_1967117_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1967135_1968035_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	1978275	2022598	4111657	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1978275_1979226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1979324_1980275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1980474_1981560_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1981575_1982337_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1982333_1983257_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1983355_1983880_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1983888_1984632_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1984727_1984967_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1984980_1985133_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1985218_1986709_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1986800_1987739_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1987735_1987912_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1987914_1988577_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1990198_1990342_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1990338_1991313_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1991207_1991462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1991479_1992430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1992426_1993701_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1993804_1994998_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1994994_1995648_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1995644_1997081_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1997068_1997428_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1998242_1998383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1998400_1999351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2000396_2002262_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2002519_2004040_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2004127_2004778_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2005726_2007022_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2007043_2007928_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2008026_2008902_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2008891_2009248_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2009378_2010353_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2010482_2010662_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2010759_2011284_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2011294_2012131_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2012243_2012615_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2012611_2013163_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2013178_2014870_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2014918_2015599_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2015846_2016311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2016480_2017410_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2017422_2018070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2018143_2019961_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2020044_2020995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2021647_2022598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2035804	2073294	4111657	transposase	Erysipelothrix_phage(100.0%)	35	NA	NA
WP_010930153.1|2035804_2036821_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2036963_2038316_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2038490_2038787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2038885_2039836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2039934_2040885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|2041370_2041547_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2042231_2043203_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2043206_2044061_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2044079_2044901_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2044932_2045727_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2045775_2046381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2046338_2047172_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2047457_2048963_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2049004_2049787_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2049856_2050303_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2050299_2051526_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2051518_2051923_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2052082_2052385_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|2052381_2053332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2053553_2054504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2054602_2055568_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2055705_2056605_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2059199_2060687_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2060697_2061894_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2061966_2063286_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2063282_2064158_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2064188_2065337_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2065354_2065669_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2065690_2066413_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2066412_2067231_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2067235_2067763_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2067768_2069025_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2069383_2070523_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2070600_2071473_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2072343_2073294_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2302169	2363517	4111657	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2302169_2303120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2303236_2303956_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2304128_2305115_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2305115_2305598_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2305601_2306885_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2306881_2307820_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2307816_2309526_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2309535_2310783_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2312393_2313683_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2314820_2315594_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2316255_2316999_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2317073_2317814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2318009_2318846_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2318896_2319667_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2319716_2320769_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2320765_2321392_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2321388_2322423_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2322601_2323618_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2323716_2324667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2327407_2328697_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2328815_2329253_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2329296_2330505_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2330651_2331116_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2331139_2332090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2333074_2333848_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2333844_2334843_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2334927_2335704_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2335859_2337464_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2337844_2338969_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2339095_2339719_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2339715_2341617_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2341665_2342460_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2342472_2343474_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2343470_2343920_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2343969_2344818_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2344915_2345458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2345501_2346452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2346607_2346934_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2346930_2347212_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2347211_2347691_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2347687_2349316_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2349312_2349657_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2349656_2352590_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2353748_2354699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2354797_2355094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2355200_2356118_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2356122_2356836_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2356849_2357821_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2359570_2359921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2359924_2361112_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2361550_2362273_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2362566_2363517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2384308	2455462	4111657	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2384308_2385259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2385811_2387437_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2387486_2388521_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2388523_2389870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2389866_2391381_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2391371_2392382_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2392855_2393797_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2393805_2394774_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2396313_2397282_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2397459_2398449_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2398495_2399254_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2399443_2400181_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010929584.1|2400279_2401230_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2401414_2402197_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2402190_2402892_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2403131_2403734_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2405060_2406011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2406007_2407564_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2407556_2408330_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2408388_2409339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2409420_2410596_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2410609_2412667_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2412663_2413689_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2413700_2414990_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2415012_2416110_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2416106_2416997_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2416993_2419078_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2419109_2420279_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2420320_2421061_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2421060_2421831_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2422686_2423472_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2423498_2425583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2425750_2427706_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2428029_2428530_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2428628_2430155_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2430292_2431180_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2431194_2432148_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2432199_2434290_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2434305_2434692_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2437385_2438189_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2439482_2440385_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2440449_2441226_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2441547_2442597_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2442720_2444391_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2444395_2445190_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2445288_2446239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2446258_2447164_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2447241_2447940_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2448099_2449044_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2449053_2450541_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2450540_2451608_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2451671_2453084_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2453269_2454490_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2454511_2455462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2540711	2591883	4111657	transposase,tRNA	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2540711_2541662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2541760_2542531_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2542527_2543199_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2543195_2543837_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2543849_2544770_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2544930_2546091_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2546132_2547083_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2547681_2547906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2548070_2549765_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2549886_2550156_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2550271_2550670_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2550680_2551637_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2551773_2552319_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2552339_2554289_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2554676_2555453_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2555458_2555851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2556272_2557223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2557219_2558317_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2558348_2559299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2561080_2562322_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562333_2563107_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563133_2564084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564182_2564965_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565053_2566280_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2567005_2568391_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568409_2569015_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2569011_2570868_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570864_2571665_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571679_2572873_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572940_2573915_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574037_2575261_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575371_2577576_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577870_2578530_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578537_2578744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579082_2579838_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580108_2580624_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580896_2581214_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581401_2581638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581928_2583284_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583330_2584671_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584772_2585405_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585404_2587774_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587806_2588766_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588752_2589439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589435_2589768_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589883_2590834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590932_2591883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2690178	2730847	4111657	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690178_2691129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691239_2691422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691521_2692118_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692301_2693393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693892_2694303_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694361_2694691_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694708_2697126_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697138_2698161_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698235_2698595_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698610_2698808_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699143_2700094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700288_2700738_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700734_2701685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701795_2703244_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703358_2703604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703743_2704694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704938_2705652_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705774_2706002_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706296_2706935_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707043_2708078_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708074_2709025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709440_2709965_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709968_2710238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710436_2711498_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711581_2713216_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713217_2714021_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714049_2715009_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2715012_2716527_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716563_2717568_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717999_2718470_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718505_2719117_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719147_2719771_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719851_2721384_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721418_2722636_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722703_2723735_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723731_2724901_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724894_2725575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725736_2726579_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726741_2727713_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727884_2728763_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728785_2729856_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729896_2730847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2786312	2859182	4111657	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2786312_2786729_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786839_2787472_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787500_2787944_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787965_2789057_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789111_2789912_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790047_2790668_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790807_2791281_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792420_2793371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793367_2801029_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801269_2805316_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805628_2806210_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806206_2807505_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807584_2808613_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808873_2809824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809820_2810771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811087_2811693_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811746_2813060_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813134_2813605_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813604_2814393_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814403_2816056_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816143_2817094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818255_2818762_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818758_2819523_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819538_2819823_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819887_2820877_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821048_2821978_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821949_2822636_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822669_2823215_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823259_2824525_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824521_2825424_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826605_2827550_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827644_2829162_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829203_2830832_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830939_2831821_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834933_2835308_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835332_2835671_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835714_2837349_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837387_2838734_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838841_2840263_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840332_2840917_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841019_2841970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842104_2843211_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843221_2844319_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844463_2845669_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845675_2846197_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846193_2846676_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846681_2846933_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846913_2847399_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847534_2850996_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851013_2851898_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851907_2852339_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852585_2853089_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853166_2854567_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854641_2855517_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855513_2856521_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856988_2857294_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857384_2857975_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858165_2859182_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2862325	2929135	4111657	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2862325_2863276_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863374_2864325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2864321_2865116_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2865147_2865852_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2865926_2866727_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2866723_2867131_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2867127_2867769_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2867761_2869762_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2871022_2872354_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2872350_2873301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2875007_2875274_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875981_2876320_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880872_2881475_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881571_2882861_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882918_2883650_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883646_2884450_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884446_2885535_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885531_2886461_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886609_2887755_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887776_2888727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2888744_2888903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889057_2892879_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893035_2893704_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893708_2895382_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895400_2896720_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896724_2899040_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899095_2901264_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901260_2906441_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906539_2906854_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907081_2907327_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907421_2907940_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908039_2909245_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909360_2910758_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910874_2911453_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911525_2912917_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913084_2914035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914315_2914936_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914932_2915346_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915342_2916386_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916441_2916630_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916639_2917404_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917494_2918151_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918242_2919001_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919026_2920628_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920828_2921833_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921933_2922197_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922314_2923091_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923681_2924632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927015_2928128_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928184_2929135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	2959521	2998710	4111657	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2959521_2960472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960489_2960639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960592_2961489_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963766_2965992_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966156_2967245_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967201_2967855_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967902_2968700_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969231_2970182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970262_2971411_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971467_2972418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972516_2972822_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972850_2973285_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973286_2974531_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974527_2975238_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975252_2976164_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976526_2976931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976927_2977386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977392_2978301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978297_2979164_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979150_2979978_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979988_2981116_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982193_2983432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983473_2984736_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984742_2985495_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985546_2985732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2986007_2986472_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986503_2987163_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987307_2989416_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989412_2990363_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990466_2991087_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991190_2991931_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993065_2994190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994235_2994604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994845_2995796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996831_2997374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997571_2997742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997759_2998710_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	3384206	3504451	4111657	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3384206_3385157_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385561_3386206_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386230_3386815_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386915_3387533_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387535_3389251_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389247_3389556_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389572_3390190_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390234_3390537_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390637_3391492_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391679_3391904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392073_3392346_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392763_3393171_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393540_3394335_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394435_3395671_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395739_3396756_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396767_3398144_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398140_3399337_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399333_3400872_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400868_3402128_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404068_3405019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405785_3406880_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406872_3408207_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408160_3408844_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3408869_3410033_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3410029_3411031_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411030_3411903_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411899_3412649_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412645_3413437_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413433_3414573_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414848_3415634_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415667_3416450_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416453_3416843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417982_3418846_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418881_3419970_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419966_3420917_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421270_3424249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425175_3426054_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3427018_3427969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3429051_3430002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429998_3430466_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430508_3431279_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431299_3432100_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432110_3433520_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433614_3434400_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434639_3435656_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435763_3436156_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436293_3436974_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436978_3437950_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438045_3438996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3440500_3441202_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3441201_3442626_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3443695_3445036_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3445151_3446915_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447026_3447905_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3448017_3448833_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448836_3449088_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449172_3450189_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450519_3450741_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453101_3454019_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454516_3455725_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455804_3457376_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457493_3458429_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458617_3459562_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460129_3465847_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465852_3466980_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467035_3467662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467933_3468950_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3469045_3469756_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469752_3470742_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470837_3472469_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472471_3473209_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473364_3474237_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474586_3475726_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475722_3476382_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476453_3477086_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477115_3477634_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477644_3478754_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478800_3479655_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479656_3480559_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481781_3482732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484488_3485478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485653_3486442_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486438_3487470_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487488_3488052_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488107_3489628_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489891_3490596_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490603_3491332_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491446_3491821_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491863_3493153_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493149_3494319_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494315_3495155_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495214_3496150_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496162_3497113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497211_3498174_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498205_3498565_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498689_3499592_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499593_3501366_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501400_3502177_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503500_3504451_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	3519389	3577462	4111657	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519389_3520340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520468_3521602_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521645_3522551_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522553_3524254_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524250_3525171_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525178_3526156_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526214_3527249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529223_3529460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3529586_3530450_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530538_3531360_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531439_3532177_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532173_3533166_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533318_3533942_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533986_3535135_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537458_3538409_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538749_3539700_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539798_3540749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541045_3541543_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541585_3543361_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543368_3544235_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544241_3544976_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546145_3546940_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547229_3547820_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547853_3549182_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549256_3550402_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550513_3551512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551474_3551909_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553425_3554310_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554306_3555512_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555508_3556369_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556481_3558272_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558312_3558957_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558978_3559287_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559452_3560739_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562172_3563123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565074_3566289_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566394_3567384_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567380_3567989_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3568001_3568631_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568627_3569248_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569279_3570071_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570922_3571378_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571396_3572323_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572376_3573663_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574593_3575466_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575462_3576413_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576511_3577462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013865	Bordetella pertussis strain J305 chromosome, complete genome	4111657	4010724	4075636	4111657	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4010724_4011210_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4011298_4011436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4011428_4012409_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4012675_4013485_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4013524_4014205_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4014198_4014657_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4014668_4015031_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4015113_4015797_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4015852_4016161_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4016179_4016494_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4016490_4018965_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4018972_4020364_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4020360_4020546_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4020524_4021226_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4021222_4022044_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4022024_4023149_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4023141_4024161_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4024366_4025257_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4025501_4026293_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4026375_4026750_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4026727_4028137_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4028129_4029512_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4029846_4031451_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4031528_4032500_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4032510_4033437_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4033827_4034778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034947_4036174_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4036373_4037240_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4037232_4038195_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4038295_4039246_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4039344_4040295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4040393_4041344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4041340_4042834_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042830_4045938_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045934_4049003_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048999_4050250_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4050430_4051183_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4051224_4051869_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4051877_4052858_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052957_4053701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4053783_4054131_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4054228_4055071_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4055115_4056003_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4056029_4056218_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4056315_4057773_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057759_4059286_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4059304_4059772_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4059771_4060794_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4060914_4061655_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4061709_4062810_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062811_4064002_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4064121_4065138_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4065456_4066128_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4066124_4067033_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4067244_4067892_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4071752_4072820_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072830_4073640_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073729_4074503_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4074503_4074668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4074685_4075636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
