The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	27282	70036	4101167	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	77634	136108	4101167	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	164894	225405	4101167	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_077069075.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	233337	286925	4101167	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826594.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	468502	585348	4101167	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_010929956.1|468502_469453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470175_471450_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471536_472619_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472629_473442_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473478_473805_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473809_474370_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474610_475603_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475621_476617_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476632_478009_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|478001_480383_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480399_480789_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480915_481146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481250_482201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482299_483250_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483246_484119_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485049_486336_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486389_487316_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487334_487790_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|488641_489433_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489464_490085_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490081_490711_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490723_491332_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491328_492318_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492423_493638_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495589_496540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497973_499260_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|499425_499734_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|499734_500400_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|500440_502231_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502343_503204_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|503200_504406_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504402_505287_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506803_507238_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507200_508199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508310_509456_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509530_510859_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510892_511483_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511772_512567_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513736_514471_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514477_515344_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515351_517127_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517169_517667_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|517963_518914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519012_519963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520303_521254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523577_524726_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|524770_525433_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525546_526539_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526535_527273_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|527352_528174_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528262_529126_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529252_529489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531463_532498_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|532556_533534_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533541_534462_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534458_536159_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536161_537067_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537110_538244_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538372_539323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539421_541491_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541533_543636_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543942_545019_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|545094_545979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|546161_546584_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546593_547994_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548036_548942_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549040_550582_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550616_551156_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551168_551639_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551776_552019_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552135_553017_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553089_553410_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|554261_555212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556535_557312_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557346_559119_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559120_560023_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560147_560507_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560538_561501_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561599_562550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562562_563498_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563557_564397_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564393_565563_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565559_566849_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566891_567266_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|567371_568109_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568116_568821_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569084_570605_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570660_571224_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571242_572274_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572270_573059_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|573079_573238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|573234_574224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575980_576931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578153_579056_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579057_579912_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579958_581068_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581078_581597_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581626_582259_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582330_582990_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|582986_584207_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584475_585348_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	589762	653595	4101167	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010929632.1|589762_590779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|591050_591677_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|591732_592860_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|592865_598583_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|599150_600095_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|600283_601219_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|601336_602908_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|602987_604196_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|604693_605611_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|607971_608193_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|608523_609540_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609624_609876_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609879_610695_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610807_611686_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611797_613561_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613676_615017_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|616086_617511_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617510_618212_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619716_620667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620762_621734_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621738_622419_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622556_622949_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623056_624073_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624312_625098_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625192_626602_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626612_627413_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627433_628204_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|628246_628714_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628710_629661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|631609_632488_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|633414_636393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|636746_637697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|637693_638782_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|638817_639681_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|640820_641210_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|641213_641996_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|642029_642815_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|643090_644230_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|644226_645018_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|645014_645764_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|645760_646633_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|646632_647634_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|647630_648794_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|648819_649503_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|649456_650791_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|650783_651878_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|652644_653595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	672506	749815	4101167	integrase,tRNA,protease,transposase	Bacillus_phage(20.0%)	57	719643:719661	739531:739549
WP_023995489.1|672506_673457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|673555_675031_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|676618_677506_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|677508_678450_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|678495_680061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|681838_683164_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|683346_684804_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|684767_685265_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|685295_686267_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|686319_686757_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|686880_687549_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|688277_689381_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|689483_690761_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|690772_691798_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|691799_693170_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|693170_694307_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|694353_696279_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|696275_697397_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|697393_698548_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|698544_699675_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|699682_701248_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|701254_702637_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|702915_703527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|703618_705034_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|705051_705762_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|705758_707081_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|707160_709122_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|709247_710561_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|710669_711968_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|712150_713059_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|713068_713278_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|713289_714969_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|715070_716024_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|716114_716942_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|716940_718827_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|718823_719423_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|719471_720371_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719643:719661	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|720579_721530_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|721652_722267_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|722395_722992_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|722988_723771_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|723843_724935_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|725214_726342_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|726683_727730_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|727877_730997_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|730998_733950_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|733965_735177_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|735360_736311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|736327_736822_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|736825_737083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|737626_738538_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|738619_738904_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|739687_740638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
739531:739549	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|741056_743621_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|743665_745519_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|745851_747423_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|748864_749815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	994701	1097094	4101167	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|994701_995817_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|995917_996736_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|996833_997445_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|997604_998981_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|999043_999502_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|999586_1000282_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1000343_1000625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1001187_1001940_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1001984_1003061_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1003057_1004008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1004110_1004773_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1004867_1005038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1005390_1006392_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1006394_1007591_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1007611_1008415_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1008495_1008792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1008822_1009386_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1009426_1010284_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1010291_1011041_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1011062_1011935_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1011963_1012743_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1012776_1013574_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1016228_1016621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1016614_1017475_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1017478_1018441_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1019217_1019907_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1020767_1021718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1022067_1022937_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1023007_1023703_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1023692_1024202_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1024198_1025419_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1025366_1026269_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1027155_1028442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1028480_1029854_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1029892_1030594_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1030892_1031882_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1031982_1032444_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1032459_1033008_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1033149_1034625_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1034730_1035822_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1035825_1036608_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1036617_1037406_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1038531_1038966_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1038962_1039973_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1040016_1040943_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1041229_1041598_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1041814_1042765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1042809_1045236_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1045284_1045977_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1046049_1047249_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1047266_1048172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1048287_1049217_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1049242_1050589_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1050616_1051366_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1051379_1052162_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1052354_1053305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1053366_1054476_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1054988_1055825_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1055894_1056860_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1056856_1057807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1058192_1058735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1059770_1060721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1060962_1061331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1061376_1062501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1063635_1064388_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1064479_1065100_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1065203_1066154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1066150_1068259_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1068403_1069063_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1069094_1069559_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1069834_1070020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1070071_1070824_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1070830_1072093_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1072134_1073373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1074450_1075578_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1075588_1076416_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1076402_1077269_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1078635_1079040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1079131_1080082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1080451_1081363_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1081377_1082088_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1082084_1083329_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1083330_1083765_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1083793_1084099_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1084197_1085148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1085204_1086359_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1086433_1087384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1087915_1088713_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1088760_1089414_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1089370_1090459_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1090623_1092849_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1095126_1096023_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1096143_1097094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	1127480	1198451	4101167	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1127480_1128431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1128487_1129600_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1131983_1132934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1133524_1134301_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1134418_1134682_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1134782_1135787_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1135987_1137589_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1137614_1138373_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1138464_1139121_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1139211_1139976_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1139985_1140174_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1140229_1141273_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1141269_1141683_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1141679_1142300_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1142580_1143531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1143698_1145090_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1145162_1145741_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1145857_1147255_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1147370_1148576_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1148675_1149194_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1149288_1149534_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1149761_1150076_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1150165_1155355_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1155351_1157520_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1157575_1159891_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1159895_1161215_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1161233_1162907_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1162911_1163580_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1163736_1167558_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1167888_1168839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1168860_1170006_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1170154_1171084_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1171080_1172169_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1172165_1172969_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1172965_1173697_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1173754_1175044_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1175140_1175743_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1180296_1180635_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1181342_1181609_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1183315_1184266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1184262_1185594_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1186854_1188855_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1188847_1189489_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1189485_1189893_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1189889_1190690_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1190764_1191469_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1191500_1192295_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1192291_1193242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1193340_1194291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1194389_1194824_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1194906_1197243_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1197434_1198451_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	1245845	1326720	4101167	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1245845_1246796_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1246792_1247743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1248003_1249032_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1249111_1250410_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1250406_1250988_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1251300_1255347_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1255587_1263249_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1263245_1264196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1265335_1265809_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1265948_1266569_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1266704_1267505_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1267559_1268651_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1268672_1269116_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1269144_1269777_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1269887_1270304_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1270296_1270989_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1271095_1271470_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1271546_1272356_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1272451_1273396_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1273434_1274406_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1274496_1274934_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1274992_1275874_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1276877_1277738_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1277770_1279153_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1279149_1280169_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1280541_1281036_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1281043_1281784_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1281864_1283469_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1283508_1284297_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1285499_1286588_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1287468_1288281_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1288293_1288602_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1288719_1290450_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1290451_1291597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1291726_1292395_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1292516_1292984_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1293119_1294502_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1294498_1295623_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1295619_1298256_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1298671_1299622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1303368_1303980_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1304202_1305663_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1305759_1307352_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1307705_1307963_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1307964_1309305_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1309400_1310090_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1310102_1311533_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1313257_1314079_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1314089_1315661_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1315689_1316667_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1316693_1317497_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1317493_1318288_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1318295_1319531_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1319523_1319958_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1320707_1321658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1322279_1324007_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1324118_1325477_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_077069076.1|1325769_1326720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	1446115	1510331	4101167	tRNA,protease,transposase	Salmonella_phage(16.67%)	60	NA	NA
WP_005013747.1|1446115_1447066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1447232_1447586_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1447598_1447961_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1448002_1448428_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1448630_1449887_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1450085_1451066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1451215_1452457_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1452555_1453506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1453514_1454210_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1457031_1457631_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1457641_1459807_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1459830_1461615_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1461614_1461704_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1462398_1462671_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1462670_1464737_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1464733_1465684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1465782_1466733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1466848_1467181_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1467177_1467864_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1467850_1468810_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1468851_1471212_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1471211_1471844_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1471945_1473286_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1473332_1474688_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1474813_1475458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1475402_1475720_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1475992_1476508_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1476601_1476763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1476778_1477534_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1477872_1478079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1478086_1478746_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1479040_1481245_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1481355_1482579_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1482701_1483676_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1483743_1484937_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1484951_1485752_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1485748_1487605_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1487601_1488207_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1488225_1489611_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1490336_1491563_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1491651_1492434_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1492532_1493483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1493509_1494283_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1494294_1495536_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1497352_1498180_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1498181_1498892_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1498888_1499488_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1499596_1500190_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1500241_1500424_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1500480_1501539_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1501538_1502525_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1502606_1503542_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1503543_1504296_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1504478_1504718_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1504907_1506137_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1506138_1506639_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1506635_1507235_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1507247_1507748_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1507747_1508806_+	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004566381.1|1508843_1510331_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 13
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	1740066	1788081	4101167	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1740066_1741017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1741115_1743716_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1743822_1744827_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1744935_1746276_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1746316_1747345_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1747540_1748086_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1748082_1748643_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1748741_1749692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1749729_1750317_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1750334_1750718_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1752077_1753370_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1753504_1754545_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1754642_1755659_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1755926_1756574_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1756699_1757458_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1757442_1758222_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1758239_1759124_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1759120_1759900_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1760004_1760604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1760892_1761645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1761763_1763164_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1763187_1763586_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1763761_1763962_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1764100_1764829_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1764962_1766378_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1766381_1767245_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1767257_1768007_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1768189_1770205_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1770186_1770855_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1771629_1772580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1772678_1773629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1773777_1774116_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1774173_1774335_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1774366_1774567_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1774832_1777406_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1777476_1780026_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1782576_1783065_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1783156_1784308_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1784361_1785183_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1785221_1786451_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1786579_1787020_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1787130_1788081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	1849642	1908912	4101167	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1849642_1850593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1850717_1851527_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1851727_1852678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1853951_1855169_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1856225_1857128_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1857204_1858077_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1858207_1858576_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1858633_1859680_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1859875_1861132_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1861136_1862474_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1862623_1863580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1863682_1864615_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1864730_1865051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1865043_1865403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1865450_1867025_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1867077_1868022_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1868039_1868870_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1868862_1870497_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1870493_1871849_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1872755_1874333_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1874336_1875611_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1875708_1876083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1877798_1878932_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1878969_1879575_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1879571_1880390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1880461_1883086_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1883072_1883327_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1883393_1883975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1884278_1884539_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1884704_1885328_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1885327_1886101_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1886097_1887306_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1887331_1887805_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1887878_1888829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1888927_1889878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1889976_1891326_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1892091_1892847_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1892939_1895822_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1896144_1896570_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1896597_1897746_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1897742_1898249_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1898255_1899551_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1899609_1900896_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1900897_1901536_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1901538_1902699_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1902725_1904081_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1904084_1905155_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1905293_1905530_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1905617_1906724_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1906689_1907994_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1908012_1908912_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	1919152	1962438	4101167	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1919152_1920103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1920201_1921152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1921351_1922437_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1922452_1923214_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1923210_1924170_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1924232_1924733_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1924765_1925509_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1925604_1925844_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1925857_1926010_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1926095_1927586_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1927677_1928616_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1928612_1928789_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1928791_1929454_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1931075_1931219_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1931215_1932190_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1932356_1933307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1933303_1934578_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1934681_1935875_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1935871_1936525_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1936521_1937958_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1937945_1938305_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1939119_1939260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1939277_1940228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1940224_1942090_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1942347_1943868_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1943955_1944606_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1945554_1946850_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1946871_1947756_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1947854_1948730_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1948719_1949076_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1949206_1950181_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1950310_1950490_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1950587_1951112_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1951122_1951959_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1952071_1952443_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1952439_1952991_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1953006_1954698_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1954746_1955427_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1955674_1956139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1956308_1957238_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1957250_1957898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077069077.1|1957971_1959801_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	1.2e-36
WP_005012067.1|1959884_1960835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1961487_1962438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	1992211	2056580	4101167	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1992211_1993162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1993383_1994334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1994432_1995398_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1995535_1996435_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1999029_2000517_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2000527_2001724_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2001796_2003116_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2003112_2003988_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2004018_2005167_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2005184_2005499_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2005520_2006243_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2006242_2007061_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2007065_2007593_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2007598_2008855_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2009213_2010353_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2010430_2011303_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2012173_2013124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2013083_2013719_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2014078_2015401_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2015719_2016541_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2017965_2018538_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2018577_2020407_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2020369_2021428_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2021465_2021927_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2022011_2022758_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2024248_2027479_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2027545_2028877_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2029129_2029504_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2029606_2030785_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2030795_2031386_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2031496_2032303_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2032328_2033123_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2034123_2035098_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2035256_2035769_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2035925_2036897_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2038641_2039448_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2039444_2040746_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2040696_2041461_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2041574_2042345_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2042429_2043617_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2043689_2044064_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2044164_2045427_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2045423_2046281_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2046453_2047455_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2047906_2048857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2050372_2051572_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2051940_2052177_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2052240_2052408_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2052521_2054327_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2054580_2055531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2055629_2056580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	2243048	2304396	4101167	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2243048_2243999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2244115_2244835_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2245007_2245994_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2245994_2246477_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2246480_2247764_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2247760_2248699_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2248695_2250405_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2250414_2251662_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2253272_2254562_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2255699_2256458_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2257134_2257878_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2257952_2258693_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2258888_2259725_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2259775_2260546_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2260595_2261648_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2261644_2262271_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2262267_2263302_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2263480_2264497_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2264595_2265546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2268286_2269576_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2269694_2270132_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2270175_2271384_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2271530_2271995_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2272018_2272969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2273953_2274727_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2274723_2275722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2275806_2276583_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2276738_2278343_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2278723_2279848_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2279974_2280598_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2280594_2282496_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2282544_2283339_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2283351_2284353_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2284349_2284856_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2284848_2285697_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2285794_2286337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2286380_2287331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2287486_2287813_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2287809_2288094_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2288090_2288570_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2288566_2290195_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2290191_2290536_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2290535_2293469_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2294627_2295578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2295676_2295973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2296079_2296997_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2297001_2297715_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2297728_2298700_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2300419_2300800_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2300803_2301991_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2302414_2303152_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2303445_2304396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	2325187	2396341	4101167	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2325187_2326138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2326690_2328316_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2328365_2329400_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2329402_2330749_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2330745_2332260_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2332250_2333261_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2333734_2334676_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2334684_2335653_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2337192_2338161_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2338338_2339328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2339374_2340133_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2340322_2341060_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2341158_2342109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2342293_2343076_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2343069_2343771_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2344010_2344613_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2345939_2346890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2346886_2348443_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2348435_2349209_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2349267_2350218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2350299_2351475_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2351488_2353546_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2353542_2354568_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2354579_2355869_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2355891_2356989_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2356985_2357876_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2357872_2359957_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2359988_2361158_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2361199_2361940_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2361939_2362710_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2363034_2363202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2363565_2364351_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2364377_2366462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2366629_2368585_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2368908_2369409_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2369507_2371034_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2371171_2372059_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2372073_2373027_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2373078_2375169_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2375184_2375571_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2378264_2379068_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2380361_2381264_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2381328_2382105_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2382426_2383476_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2383599_2385270_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2385274_2386069_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2386167_2387118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2387137_2388043_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2388120_2388819_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2388978_2389923_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2389932_2391420_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2391419_2392487_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2392550_2393963_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2394148_2395369_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2395390_2396341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	2492170	2550951	4101167	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2492170_2494120_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2494507_2495284_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2495289_2495682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2496103_2497054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2497050_2498148_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2498179_2499130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2500911_2502153_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2502164_2502938_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2502964_2503915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2504394_2505051_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2505065_2506733_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2506735_2507365_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2507576_2508671_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2508815_2509628_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2509631_2511335_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2511385_2512516_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2512702_2513779_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2513860_2514511_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2514525_2515929_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2516212_2517031_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2517027_2517732_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2518631_2519747_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2519780_2520155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2520177_2521335_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2521347_2521581_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2522215_2525185_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2525199_2525409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2525560_2526190_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2526186_2528277_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2528300_2528981_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2528977_2529538_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2529544_2530642_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2530794_2531388_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2531384_2532677_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2532690_2533233_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2533242_2534079_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2534112_2535174_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2535215_2536268_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2536283_2536586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2536727_2537678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2537856_2539551_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2539547_2540633_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2540680_2541580_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2541590_2542235_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2543256_2546499_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2546509_2547664_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2547890_2548853_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2548951_2549902_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2550000_2550951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	2603488	2669988	4101167	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2603488_2604439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2604808_2605381_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2605383_2606394_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2606386_2606887_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2606897_2607239_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2607250_2608042_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2608058_2608328_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2608350_2609139_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2609185_2610202_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2610418_2611861_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2612039_2613659_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2613779_2615600_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2615678_2617211_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2617244_2618891_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2618960_2619983_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2620000_2621134_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2621136_2621826_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2621825_2622611_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2622654_2623419_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2623457_2624879_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2624944_2625649_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2625696_2626116_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2626128_2626536_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2626719_2627430_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2627556_2627847_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2627864_2628347_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2632852_2634007_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2634312_2635329_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2635575_2636364_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2636430_2637111_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2637107_2637878_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2637976_2638927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2638982_2639900_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2639910_2641089_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2641108_2642104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2643692_2644301_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2644288_2645329_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2645346_2646309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2646305_2647499_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2647495_2648293_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2648318_2649305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2649323_2651363_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2651564_2652245_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2652258_2653170_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2653166_2653745_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2653883_2654789_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2654796_2658216_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2658203_2660804_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2661759_2662392_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2662785_2663544_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2663540_2664743_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2664930_2665881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2666788_2667934_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2667920_2668676_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2668792_2668972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2669037_2669988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	2869376	2942702	4101167	tRNA,protease,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2869376_2870732_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2872210_2872933_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2872987_2873971_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2874100_2875051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2875047_2875950_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2876037_2876796_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2876808_2877900_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2877997_2879425_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2879654_2880869_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2880914_2883785_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2886195_2886684_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2886809_2889506_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2889660_2891943_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2892117_2892741_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2892839_2893790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2893836_2894391_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2894458_2895304_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2895373_2896342_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2896341_2897205_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2900037_2903964_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2904699_2907930_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2908211_2909039_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2909072_2909768_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2909760_2911041_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2911050_2912028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2912009_2913710_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2913812_2914916_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2914946_2915702_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2915708_2917229_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2917271_2917574_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2917570_2918203_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2918281_2920147_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2920143_2920938_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2920966_2922082_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2922986_2923865_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2923864_2924689_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2924856_2925807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2926019_2928869_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2928850_2929579_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2929719_2931183_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2931179_2931551_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2931568_2932882_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2932918_2933377_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2933489_2934440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2934436_2935450_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2935589_2936576_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2936934_2937642_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2938222_2939173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2939324_2939927_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2939945_2940578_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2940622_2940874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2940815_2942702_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	2954427	3004040	4101167	holin,tRNA,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2954427_2955378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2955404_2955869_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2957075_2959364_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2959480_2960353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2960395_2961550_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2961584_2962415_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2962498_2964043_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2964085_2964445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2964446_2964860_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2964900_2965218_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2965302_2966019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2966282_2967704_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2967770_2970518_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2970850_2971867_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2972202_2972844_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2972934_2974371_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2974528_2975602_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2975598_2976735_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2976879_2977224_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2977290_2979171_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2979220_2980156_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2980488_2981505_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2982442_2983870_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2983866_2984889_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2984878_2985352_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2985492_2986380_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2986376_2988020_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2988016_2989066_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2989854_2990871_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2990970_2991603_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2991611_2992001_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2992053_2993106_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2993969_2995676_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2995749_2996250_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2996264_2998322_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|2998348_2998642_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|2998743_2999691_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|2999703_3000579_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3000699_3001260_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3001294_3001618_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3002053_3002791_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3003089_3004040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	3024991	3097485	4101167	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3024991_3025942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3025984_3027160_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3027381_3029172_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3029184_3030846_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3030858_3033564_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3033856_3035611_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3035607_3036234_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3036230_3037082_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3037157_3039272_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3039458_3040073_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3040218_3040470_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3040539_3041922_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3041918_3045098_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3045905_3046823_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3046874_3047606_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3047665_3048238_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3049746_3050763_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3050900_3051950_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3052054_3053005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3053100_3053826_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3054036_3054417_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3054722_3055595_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3055602_3055983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3056136_3057411_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3058898_3059807_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3060604_3061669_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3063505_3064507_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3064729_3065371_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3065453_3067280_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3067523_3068453_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3068452_3069202_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3069273_3070188_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3070207_3071353_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3071413_3072325_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3072405_3073356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3073454_3074039_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3074073_3075063_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3075059_3076001_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3075997_3077218_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3077260_3077575_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3077766_3078126_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3078127_3079843_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3080030_3080702_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3080716_3082045_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3082041_3082941_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3083027_3084113_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3084105_3085239_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3085238_3087920_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3088290_3088872_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3088997_3089723_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3089719_3090397_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3090612_3091794_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3092566_3092749_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3092778_3093729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3093858_3094251_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3094527_3095439_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3095563_3096538_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3096534_3097485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	3110992	3164510	4101167	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3110992_3111943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3112055_3112307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3112812_3113931_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3114050_3114263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3114422_3114644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3114696_3115647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3116823_3118194_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3118226_3119018_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3119030_3120086_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3120111_3120987_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3121092_3121341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3121375_3122830_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3122826_3123348_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3123376_3124729_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3124952_3127841_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3129985_3131287_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3131301_3132018_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3132299_3132980_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3132991_3133159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3133267_3133414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3133507_3134167_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3134565_3136398_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3136394_3137345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3138508_3140224_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3140234_3140726_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3140798_3141815_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3141982_3142762_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3142780_3143308_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3143601_3143871_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3143961_3146121_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3146241_3146961_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3146957_3147908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3148048_3149266_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3149259_3149871_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3150504_3151482_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3151625_3152372_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3152393_3152840_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3153627_3155859_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3155881_3156682_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3156963_3158196_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3158306_3159296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3159326_3160715_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3162313_3163297_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3163493_3164510_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	3228968	3302130	4101167	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_010930048.1|3228968_3229919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3229915_3230935_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3230944_3233653_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3233800_3234457_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3234555_3235506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3235653_3236547_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3236746_3238441_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3238475_3239402_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3239470_3240568_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3240586_3241450_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3241461_3242244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3242240_3243359_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3243355_3244888_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3244928_3245936_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3246080_3246803_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3246818_3247841_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3248157_3248892_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3248976_3250722_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3250718_3251471_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3251515_3252472_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3252560_3253127_+	membrane protein	NA	NA	NA	NA	NA
WP_023997539.1|3253134_3253995_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3254024_3254753_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3254784_3255468_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3256305_3257220_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3257284_3258193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3258283_3259708_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3259709_3261032_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3261028_3263167_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3263244_3268365_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3268465_3268774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3268843_3269401_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3269416_3270898_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3273068_3274406_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3274440_3276438_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3276455_3278504_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3278634_3279501_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3279769_3280735_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3280849_3281998_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3282422_3282734_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3282767_3283028_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3283177_3284311_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3284381_3285518_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3285683_3286478_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3286540_3286984_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3287099_3288050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3288151_3288580_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3288652_3290848_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3291069_3292020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3291979_3292504_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3292635_3293607_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3293726_3296171_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3296186_3296777_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3297020_3297971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3298128_3299394_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3299427_3300525_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3301179_3302130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	3313417	3413530	4101167	tRNA,tail,transposase,protease,terminase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3313417_3314368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3315099_3315477_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3315461_3316163_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3316306_3316999_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3316998_3318102_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3318211_3320584_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3320580_3322140_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3322164_3322962_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3322993_3324139_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3324243_3325686_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3325688_3326918_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3329055_3330006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3331135_3331693_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3331668_3332019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3332187_3332982_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3332978_3334028_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3334027_3334717_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3334803_3335301_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3335332_3336649_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3336665_3337640_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3337676_3338135_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3338134_3338815_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3338817_3339246_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3339298_3341029_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3341094_3341667_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3341647_3342334_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3342689_3343361_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3343689_3343911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3343910_3344192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3344188_3344704_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3344703_3345255_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3345233_3345476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3345480_3346293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3346292_3346556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3346596_3346794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3346774_3347191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3347195_3351152_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3351144_3351534_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3351530_3352064_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3352131_3352491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3352500_3355113_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3355138_3355429_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3355446_3355776_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3355785_3356304_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3356558_3357059_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3357066_3357489_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3357485_3357884_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3357880_3358276_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3358275_3358476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3358477_3358960_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3359022_3359274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3359948_3360899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3361327_3361930_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3362052_3362295_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3362300_3363356_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3363384_3364803_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3364805_3366083_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3366069_3366555_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3367194_3368145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3368401_3369091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3369083_3369335_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3369889_3370501_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3370572_3370779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3371030_3371981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3372079_3373153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3373320_3374115_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3374154_3374679_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3374671_3376414_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3376623_3377382_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3377384_3378092_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3378108_3378990_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3379000_3379759_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3379727_3380483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3380552_3381971_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3381992_3382643_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3382776_3383112_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3383200_3384151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3384227_3386048_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3386052_3387126_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3387248_3388217_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3388290_3389202_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3389220_3389793_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3389873_3390422_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3390421_3392011_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3392080_3392320_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3392360_3393386_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3393451_3394633_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3394729_3395182_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3395191_3396532_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3396848_3397886_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3398267_3398627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3398710_3399652_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3399726_3400677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3400970_3402065_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3402146_3403028_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3403049_3403889_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3403964_3405482_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3405578_3406679_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3406695_3407118_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3407140_3407353_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3407399_3408320_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3408502_3409252_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3409254_3409584_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3409790_3411224_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3411235_3411619_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3411680_3412481_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3412579_3413530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	3701196	3834122	4101167	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	114	3745839:3745856	3790479:3790496
WP_005013747.1|3701196_3702147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3702143_3702779_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3702908_3703808_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3703903_3704395_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3704441_3705407_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3706540_3707782_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3707895_3708912_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3708946_3709423_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3709565_3710474_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3710587_3711700_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3711800_3712286_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3712422_3713673_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3713774_3714287_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3714385_3715336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3715401_3716340_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3716362_3716989_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3716985_3717642_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3717638_3718241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3718247_3718835_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3719015_3719585_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3719655_3720975_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3721081_3721273_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3721524_3722814_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3722968_3723964_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3724048_3724723_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3724719_3725670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3725831_3727073_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3727069_3728014_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3728132_3729083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3729042_3729972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3730025_3730361_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3730405_3731170_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3731193_3731934_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3731941_3733495_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3733529_3734507_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3734779_3735361_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3735412_3742315_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3742761_3742893_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3743158_3743365_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3744369_3745029_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3745056_3746202_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3745839:3745856	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3746342_3746678_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3746752_3747613_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3747876_3748578_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3748747_3749143_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3749252_3750203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3750213_3750855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3751021_3751264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3751362_3752313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3752348_3752816_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3753049_3753427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3753423_3753606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3753609_3754596_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3754592_3755240_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3755297_3755825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3755861_3757046_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3757056_3757398_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3757510_3757711_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3757707_3758697_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3760183_3762154_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3762395_3762794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3762802_3763726_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3764183_3765134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3765364_3767056_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3767104_3767377_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3767373_3767745_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3767840_3767975_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3768380_3769790_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3769792_3770902_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3770996_3773450_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3773568_3774360_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3774479_3775907_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3775945_3776917_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3777335_3778499_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3778586_3779432_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3780988_3781939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3782493_3782868_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3782942_3784001_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3784024_3784975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3787856_3789026_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3789126_3790734_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3790479:3790496	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3790780_3792802_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3792830_3793076_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3793089_3794280_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3794475_3795441_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3795463_3796603_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3796814_3797777_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3797900_3799925_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3800121_3802365_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3802643_3803102_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3804029_3806651_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3806714_3809342_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3809493_3810558_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3810557_3811328_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3811336_3812170_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3812182_3812962_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3813035_3814469_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3814496_3815255_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3815310_3817161_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3817254_3817731_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3817747_3818668_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3818774_3819275_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3819648_3820341_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3820649_3821600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3821596_3825370_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3825706_3827596_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3827607_3828501_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3828604_3829402_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3829398_3830250_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3830311_3830992_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3831019_3831355_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3831355_3832315_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3832335_3832824_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_023994644.1|3833105_3834122_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013870	Bordetella pertussis strain F501 chromosome, complete genome	4101167	4023338	4076770	4101167	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4023338_4024289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024458_4025685_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025884_4026751_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026743_4027706_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027806_4028757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028855_4029806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029904_4030855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030851_4032345_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032341_4035449_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035445_4038514_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038510_4039761_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039941_4040703_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040735_4041386_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041388_4042228_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042468_4043212_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4043294_4043642_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043739_4044582_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044626_4045514_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045540_4045729_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045826_4047284_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4047270_4048797_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048815_4049283_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4049282_4050305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4050425_4051145_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4051220_4052321_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052322_4053513_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053632_4054649_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054967_4055639_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055635_4056544_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056755_4057403_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061254_4062331_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062341_4063151_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063240_4064014_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4064196_4065147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4065035_4066058_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4066047_4067202_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4067241_4068654_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4068778_4069645_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4069646_4070471_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4070467_4071229_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4071309_4071996_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4072169_4073177_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4073173_4073953_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4074010_4075273_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4075819_4076770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
