The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	27282	70036	4104234	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	77634	136108	4104234	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	164895	225358	4104234	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164895_165846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167289_168192_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168169_168799_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169081_170512_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170545_171175_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171223_172831_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172855_173539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173620_174097_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174303_175254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176369_176897_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176988_177804_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177864_178599_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178636_180715_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180964_181237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181338_182424_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182427_184332_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_050818111.1|184328_187955_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188015_188579_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188586_189009_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189036_189456_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189484_189931_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190057_190555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190709_192980_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193055_194261_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194359_195310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195412_196048_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196044_196938_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197332_198433_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198514_198889_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198948_201813_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201957_202698_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202767_203979_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204007_204976_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205589_206540_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206696_207020_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207124_208165_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208170_208950_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|208995_209292_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209317_209593_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209649_210294_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210293_210980_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211178_211961_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212011_212737_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212768_214118_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214229_215162_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215619_218415_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219008_221852_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222022_222742_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222780_223329_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223483_224383_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224407_225358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	233290	286878	4104234	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233290_234241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234327_235278_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235274_236225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236323_237121_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238070_238481_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239502_240246_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240289_241333_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241503_243606_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245016_245973_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|245991_246483_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246479_247835_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247835_248534_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248530_249232_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249484_250534_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250639_251581_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251577_253467_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253553_254192_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254334_255720_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255650_256187_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256338_257730_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257746_258727_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258862_259846_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259910_260810_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260916_262671_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262678_263803_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263816_264797_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265527_266478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267037_267583_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267708_269286_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269301_270456_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270469_270595_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270591_272343_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272339_274019_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274081_274630_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275772_276051_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277094_278045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278031_278247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278322_278484_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279150_279600_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279609_280221_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280379_281228_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281253_282636_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282700_283342_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283481_283940_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|283964_284741_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284794_285931_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285927_286878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	555263	614563	4104234	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555263_556214_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557537_558314_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558348_560121_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560122_561025_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561149_561509_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561540_562503_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562601_563552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563564_564500_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564559_565399_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565395_566565_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566561_567851_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567893_568268_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568382_569111_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569118_569823_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570086_571607_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571662_572226_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572244_573276_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573272_574061_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574236_575226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|576982_577933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579155_580058_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580059_580914_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|580960_582070_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582080_582599_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582628_583261_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583332_583992_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|583988_585128_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585477_586350_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586505_587243_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587245_588877_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|588972_589962_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|589958_590669_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590764_591781_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592052_592679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592734_593862_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593867_599585_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600152_601097_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601285_602221_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602338_603910_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|603989_605198_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605695_606613_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|608973_609195_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609525_610542_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610626_610878_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610881_611697_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611809_612688_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612799_614563_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	673507	750816	4104234	protease,transposase,tRNA,integrase	Bacillus_phage(20.0%)	59	720644:720662	740532:740550
WP_023995489.1|673507_674458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674556_676032_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677619_678507_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678509_679451_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679496_681062_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682839_684165_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684347_685805_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685768_686266_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686296_687268_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687320_687752_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687881_688550_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689278_690382_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690487_691762_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691773_692799_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692800_694171_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694171_695308_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695354_697280_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697276_698398_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698394_699549_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699545_700676_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700683_702249_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702255_703638_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703916_704528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704619_706035_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706052_706763_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706759_708082_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708161_710123_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710248_711562_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711670_712969_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713151_714060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714069_714279_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714290_715970_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716071_717025_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717115_717943_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717941_719828_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719824_720424_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720472_721372_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720644:720662	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721580_722531_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722653_723268_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723396_723993_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|723989_724772_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724844_725936_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726215_727343_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727684_728731_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729241_731998_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|731999_734951_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|734966_736178_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736174_736375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736361_737312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737328_737823_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737826_738084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738627_739539_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739620_739905_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740688_741639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740532:740550	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742057_744622_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744666_746520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746852_748424_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749692_749848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749865_750816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	1004057	1098094	4104234	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1004057_1005008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1005110_1005773_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1005867_1006038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1006390_1007392_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1007394_1008591_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1008611_1009415_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1009495_1009792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1009822_1010386_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1010426_1011284_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1011291_1012041_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1012062_1012935_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1012963_1013743_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1013776_1014574_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1017228_1017621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1017614_1018475_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1018478_1019441_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1020217_1020907_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1021767_1022718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1023067_1023937_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1024007_1024703_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1024692_1025202_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1025198_1026419_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1026366_1027269_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1028155_1029442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1029480_1030854_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1030892_1031594_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1031892_1032882_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1032982_1033444_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1033459_1034008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1034149_1035625_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1035730_1036822_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1036825_1037608_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1037617_1038406_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1039531_1039966_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1039962_1040973_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1041016_1041943_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1042229_1042598_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1042650_1042797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1042814_1043765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1043809_1046236_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1046284_1046977_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1047049_1048249_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1048266_1049172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1049287_1050217_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1050242_1051589_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1051601_1052366_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1052379_1053162_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|1053354_1054305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1054366_1055476_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1055988_1056825_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1056951_1057860_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1057856_1058807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1058824_1058995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1059192_1059735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1060770_1061721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1061962_1062331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1062376_1063501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1064635_1065376_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1065479_1066100_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1066203_1067154_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1067150_1069259_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1069403_1070063_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1070094_1070559_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1070834_1071020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1071071_1071824_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1071830_1073093_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1073134_1074373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1075450_1076578_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1076588_1077416_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1077402_1078269_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1079635_1080040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1080131_1081082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1081099_1081264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1081451_1082363_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1082377_1083088_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1083084_1084329_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1084330_1084765_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1084793_1085099_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1085197_1086148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1086204_1087353_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1087433_1088384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1088915_1089713_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1089760_1090414_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1090370_1091459_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1091623_1093849_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1096126_1097023_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1096976_1097126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1097143_1098094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	1128480	1200500	4104234	transposase,protease	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
WP_005012808.1|1128480_1129431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1129487_1130600_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1132983_1133934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1134524_1135301_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1135418_1135682_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1135782_1136787_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1136987_1138589_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1138614_1139373_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1139464_1140121_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1140211_1140976_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1140985_1141174_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1141229_1142273_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1142269_1142683_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1142679_1143300_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1143580_1144531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1144698_1146090_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1146162_1146741_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1146857_1148255_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1148370_1149576_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1149675_1150194_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1150288_1150534_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1150761_1151076_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1151174_1156355_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1156351_1158520_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1158575_1160891_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1160895_1162215_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1162233_1163907_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1163911_1164580_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1164736_1168558_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1168712_1168871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1168888_1169839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1169860_1171006_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1171154_1172084_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1172080_1173169_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1173165_1173969_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1173965_1174697_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1174754_1176044_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1176140_1176743_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1181296_1181635_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1182342_1182609_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1184315_1185266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1185364_1186315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186311_1187643_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188903_1190904_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190896_1191538_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191534_1191942_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191938_1192739_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192813_1193518_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193549_1194344_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194340_1195291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195389_1196340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196438_1196873_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1196955_1199292_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199483_1200500_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	1247894	1328769	4104234	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_010927663.1|1247894_1248845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248841_1249792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250052_1251081_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251160_1252459_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252455_1253037_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253349_1257396_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257636_1265298_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265294_1266245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267384_1267858_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1267997_1268618_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1268753_1269554_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269608_1270700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270721_1271165_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271193_1271826_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271936_1272353_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272345_1273038_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273144_1273519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273595_1274405_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274500_1275445_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275483_1276455_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276545_1276983_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277041_1277923_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278926_1279787_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279819_1281202_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281198_1282218_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282590_1283085_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283092_1283833_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283913_1285518_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285557_1286346_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286471_1288637_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289517_1290330_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290342_1290651_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290768_1292499_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1292500_1293703_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1293775_1294444_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294565_1295033_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295168_1296551_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296547_1297672_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297668_1300305_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300720_1301671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305417_1306029_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306251_1307712_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307808_1309401_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309754_1310012_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310013_1311354_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311449_1312139_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312151_1313582_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315306_1316128_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316138_1317710_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317738_1318716_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318742_1319546_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319542_1320337_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320344_1321580_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321593_1322007_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1322317_1322635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1322756_1323707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324328_1326056_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326167_1327526_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1327582_1327801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1327818_1328769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	1448163	1500316	4104234	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1448163_1449114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1449212_1450163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1450180_1450333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1450329_1450683_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450695_1451058_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451099_1451525_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451727_1452984_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453182_1454163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454312_1455554_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455652_1456603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456611_1457307_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460128_1460728_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460738_1462904_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462927_1464712_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464711_1464801_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465495_1465768_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465767_1467834_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467830_1468781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468896_1469229_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469225_1469912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469898_1470858_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1470890_1473260_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473259_1473892_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1473993_1475334_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475380_1476736_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1477026_1477263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477450_1477768_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478040_1478556_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1478826_1479582_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479920_1480127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480134_1480794_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481088_1483293_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483403_1484627_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484749_1485724_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485791_1486985_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1486999_1487800_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487796_1489653_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489649_1490255_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490273_1491659_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492384_1493611_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493699_1494482_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494580_1495531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495557_1496331_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496342_1497584_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499365_1500316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	1544241	1612328	4104234	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1544241_1544730_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544847_1545426_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545531_1545900_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1545998_1546949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1546955_1548068_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548754_1549957_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1550160_1552821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1552833_1556238_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556905_1559131_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559177_1559504_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559554_1560163_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560261_1561212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561281_1562046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1562042_1562579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562745_1563597_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563656_1564283_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564279_1565230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565329_1566442_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566431_1567433_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567538_1569050_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569046_1570351_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570462_1571023_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571290_1571845_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572300_1572516_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572770_1575368_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575364_1576552_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1577210_1577825_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1577913_1579035_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579052_1579958_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580850_1581801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1581982_1582735_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582803_1583463_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583459_1584188_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584200_1586480_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586504_1586708_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586749_1587382_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587517_1588435_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588431_1589145_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589382_1590153_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590157_1590757_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591001_1592492_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592550_1592835_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1593400_1594327_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594463_1595204_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595370_1596747_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596928_1597834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599485_1601288_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1601405_1602056_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602154_1603105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603126_1604347_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604532_1605945_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606008_1607076_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607075_1608563_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608572_1609517_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609676_1610375_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610452_1611358_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611377_1612328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	1648277	1703868	4104234	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648277_1649228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649286_1650060_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650052_1651609_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651605_1652556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653882_1654485_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654724_1655426_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655419_1656202_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656386_1657337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657435_1658173_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658362_1659121_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659167_1660157_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660334_1661303_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662842_1663811_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663819_1664761_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665234_1666245_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666235_1667750_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667746_1669093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1669095_1670130_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670179_1671805_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672357_1673308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673412_1674360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674413_1676228_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676220_1676895_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677024_1680099_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680112_1680412_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680726_1681350_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1681593_1682463_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682440_1683385_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683470_1684397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1684509_1685289_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685279_1686476_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686506_1687457_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687678_1688368_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688432_1689188_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689239_1690232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690241_1691195_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691310_1692273_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693674_1694103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694099_1695050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1695343_1696066_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696504_1697692_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1697695_1698046_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699795_1700767_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700780_1701494_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701498_1702416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702522_1702819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702917_1703868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	1936632	2006284	4104234	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1936632_1939290_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1939367_1940570_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1940566_1941079_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1941201_1941639_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1941915_1942866_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1942964_1943915_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1944078_1945974_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1946087_1946255_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1946318_1946555_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1946923_1948075_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1949638_1950589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069080.1|1951040_1952042_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952214_1953072_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953068_1954331_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954431_1954806_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1954878_1956066_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956150_1956921_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957034_1957799_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957749_1959051_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1959047_1959854_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1961598_1962570_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962726_1963239_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963397_1964372_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965372_1966167_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966192_1966999_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967109_1967700_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967710_1968889_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1968991_1969366_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969618_1970950_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971016_1974247_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975737_1976484_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976568_1977030_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977067_1978126_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978088_1979918_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1979957_1980530_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1981954_1982776_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983094_1984417_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984776_1985412_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985371_1986322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987192_1988065_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988142_1989282_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989640_1990897_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1990902_1991430_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991434_1992253_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992252_1992975_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1992996_1993311_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993328_1994477_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994507_1995383_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995379_1996699_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996771_1997968_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1997978_1999466_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002060_2002960_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003097_2004063_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004161_2005112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005333_2006284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	2017780	2067176	4104234	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2017780_2018731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019868_2020165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020339_2021692_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021834_2022851_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024830_2025844_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2025930_2026836_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2026992_2027337_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027494_2027953_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2027966_2030183_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030179_2031241_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031269_2032244_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032195_2033014_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033026_2033635_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2033809_2034205_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034223_2035663_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035691_2036039_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036057_2037008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037660_2038611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038694_2040512_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040585_2041233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041245_2042175_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042344_2042809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043056_2043737_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043785_2045477_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045492_2046044_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046040_2046412_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046524_2047361_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047371_2047896_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2047993_2048173_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048302_2049277_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049407_2049764_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049753_2050629_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050727_2051612_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051633_2052929_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053877_2054528_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054615_2056136_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056393_2058259_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059304_2060255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060272_2060413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061227_2061587_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061574_2063011_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063007_2063661_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063657_2064851_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2064954_2066229_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066225_2067176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	2078380	2119071	4104234	transposase,tRNA,protease	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2078380_2079331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079429_2080380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080339_2080753_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081037_2081337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081746_2084029_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2084714_2086745_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086764_2086977_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087254_2087794_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087907_2089203_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089279_2090437_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090620_2091520_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091538_2092843_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092808_2093915_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094002_2094239_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094377_2095448_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095451_2096807_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2096833_2097991_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2097996_2098635_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2098636_2099932_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2099981_2101268_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101283_2101790_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101786_2102935_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2102962_2103388_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103710_2106593_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106685_2107441_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108206_2109556_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109654_2110605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110703_2111654_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111727_2112201_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112226_2113435_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113431_2114205_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114204_2114828_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2114993_2115254_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115557_2116139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116205_2116460_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116446_2119071_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	2146854	2212403	4104234	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2146854_2147805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148005_2148815_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2148939_2149890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2149886_2150780_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2150904_2151099_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151098_2151440_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151449_2153312_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153441_2153954_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2153956_2154280_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154281_2154692_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154729_2155941_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2155958_2156471_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156686_2157178_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157430_2159467_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159544_2160747_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2160875_2161526_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163083_2164034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164604_2164817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164834_2165566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165600_2166242_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166234_2166903_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169115_2169892_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169913_2171071_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171067_2171499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2171495_2172293_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172312_2172714_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172780_2173752_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173817_2175041_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175268_2176219_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176342_2178796_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2178984_2180289_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180393_2181047_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181049_2182360_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2182538_2183117_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183228_2183429_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183774_2184341_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184424_2184628_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184934_2185255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185296_2185578_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185652_2186909_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187291_2187621_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189191_2190013_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190012_2191152_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191158_2192055_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2192069_2193977_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194336_2196949_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197001_2199302_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199298_2200507_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2200768_2201143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201139_2202090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202188_2204183_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204242_2205208_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205197_2208059_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208061_2208568_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208672_2209881_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209882_2210821_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2210982_2211456_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211452_2212403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	2507098	2565342	4104234	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2507098_2508049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508528_2509185_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509199_2510867_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510869_2511499_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511710_2512805_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2512949_2513762_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2513765_2515349_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2515519_2516650_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516836_2517913_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517994_2518645_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2518659_2520063_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520346_2521165_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2521161_2521866_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522765_2523881_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523914_2524289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524311_2525469_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525481_2525715_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526349_2529319_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529333_2529543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529694_2530324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2530320_2532378_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2532434_2533115_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533111_2533672_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533678_2534776_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2534928_2535522_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535518_2536811_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536824_2537367_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537376_2538213_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538246_2539308_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539349_2540402_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540417_2540720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540861_2541812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2541829_2541994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2541990_2543685_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543681_2544767_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544814_2545714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545724_2546369_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547390_2550633_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550643_2551798_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2552024_2552987_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2553085_2554036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554134_2555085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2555094_2555784_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555843_2556281_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2556326_2557220_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2557267_2558440_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2558436_2559591_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2559787_2560138_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2560127_2560562_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560578_2561529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561676_2562144_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2562124_2563282_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2563347_2564274_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2564391_2565342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	2607622	2674122	4104234	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607622_2608573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608942_2609515_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609517_2610528_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610520_2611021_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611031_2611373_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2611441_2612176_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612192_2612462_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612484_2613273_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613319_2614336_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614552_2615995_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616173_2617793_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617913_2619734_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619812_2621345_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2621378_2623025_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623094_2624117_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624134_2625268_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625270_2625960_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2625959_2626745_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626788_2627553_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627591_2629013_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629078_2629783_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629830_2630250_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630262_2630670_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630853_2631564_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631690_2631981_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2631998_2632481_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2636986_2638141_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638446_2639463_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639709_2640498_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640564_2641245_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641241_2642012_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642110_2643061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643116_2644034_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644044_2645223_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645242_2646238_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647826_2648435_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648422_2649463_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649480_2650443_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650439_2651633_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651629_2652427_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652452_2653439_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653457_2655497_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655698_2656379_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656392_2657304_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657300_2657879_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658017_2658923_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658930_2662350_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662337_2664938_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665893_2666526_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666919_2667678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667674_2668877_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669064_2670015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670922_2672068_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672054_2672810_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672926_2673106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673171_2674122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	2836687	2902270	4104234	transposase,tRNA	Oenococcus_phage(33.33%)	53	NA	NA
WP_023853639.1|2836687_2837638_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2837736_2838687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852977.1|2838704_2838893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930231.1|2838889_2839879_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2839962_2840316_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2840393_2841002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2842675_2843254_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2843278_2844232_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2844271_2845189_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2845310_2846237_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2846244_2846991_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2847317_2848259_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2848485_2850183_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2850617_2852039_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2852192_2852972_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2853096_2853975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2854080_2855205_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2855250_2856213_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2856205_2857060_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2857167_2857578_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2857574_2858525_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2858623_2859505_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2859582_2860962_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2861000_2861846_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2861861_2862176_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2862208_2862745_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2862917_2863493_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2863595_2864333_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2864400_2866038_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2866145_2866901_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2866888_2867851_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2867958_2868753_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2868814_2870890_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2871054_2873430_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2873510_2874866_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876344_2877067_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877121_2878105_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2878234_2879185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879181_2880084_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880171_2880930_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880942_2882034_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882131_2883559_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883788_2885003_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2885048_2887919_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890329_2890818_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890943_2893640_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893794_2896077_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2896240_2896873_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2896971_2897922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2897968_2898523_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898590_2899436_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899505_2900474_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2900473_2902270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	2919840	2975999	4104234	transposase,tRNA,holin	Catovirus(22.22%)	49	NA	NA
WP_010930190.1|2919840_2921361_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921403_2921706_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921702_2922335_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922413_2924279_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2924275_2925070_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2925098_2926214_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927118_2927997_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927996_2928821_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2928988_2929939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2930151_2933001_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2932982_2933711_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933851_2935315_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935311_2935683_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935700_2937014_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2937050_2937509_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2937463_2937604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2937621_2938572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938568_2939582_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939721_2940708_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2941066_2941774_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2942354_2943305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2943456_2944059_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2944077_2944710_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944754_2945006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944947_2946834_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2946852_2947695_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2947691_2949050_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2949270_2950065_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2950295_2951789_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2952024_2954106_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2954300_2955341_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2955475_2956492_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2956513_2957371_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2957415_2958192_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2958404_2958542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2958559_2959510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2959536_2960001_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2961207_2963496_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2963612_2964485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2964527_2965682_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965716_2966547_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2966630_2968175_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2968217_2968577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968578_2968992_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969032_2969350_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2969434_2970151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2970414_2971836_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971902_2974650_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2974982_2975999_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	3053863	3116060	4104234	transposase	Bacillus_virus(15.38%)	54	NA	NA
WP_010929632.1|3053863_3054880_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055017_3056067_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056171_3057122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057217_3057943_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058153_3058534_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058839_3059712_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059719_3060100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060253_3061528_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063015_3063924_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064721_3065786_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3067622_3068657_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068846_3069488_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069570_3071397_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071640_3072570_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072569_3073319_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073390_3074305_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074324_3075470_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075530_3076442_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076522_3077473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077571_3078156_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078190_3079180_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079176_3080118_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080114_3081335_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081377_3081692_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081883_3082243_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082244_3083960_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084147_3084819_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084833_3086162_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086158_3087058_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087144_3088230_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3088222_3089353_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3089355_3092037_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092407_3092989_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093114_3093840_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093836_3094514_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094729_3095911_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096683_3096866_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096895_3097846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097975_3098368_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098644_3099556_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099680_3100655_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100651_3101602_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3101700_3102786_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3102883_3103294_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3103909_3105823_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3105958_3108571_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3108572_3109307_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3109470_3110652_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3110648_3110861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3110857_3111838_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3111883_3112711_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3112860_3114675_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3114729_3115113_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3115109_3116060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	3233085	3302088	4104234	transposase	Klosneuvirus(16.67%)	54	NA	NA
WP_041337087.1|3233085_3234036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234032_3235052_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235061_3237770_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237917_3238574_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238672_3239623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239770_3240664_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240863_3242558_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242592_3243519_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243587_3244685_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244703_3245567_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245578_3246361_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246357_3247476_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247472_3249005_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249045_3250053_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250197_3250920_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250935_3251958_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252274_3253009_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253093_3254839_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254835_3255588_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255632_3256589_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256677_3257244_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257251_3258112_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258141_3258870_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258901_3259585_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260422_3261337_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261401_3262310_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262400_3263825_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263826_3265149_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265145_3267284_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267361_3272482_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_010929994.1|3272960_3273518_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273533_3275015_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275069_3276923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277185_3278523_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278557_3280555_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280572_3282621_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282751_3283618_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283886_3284852_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3284966_3286115_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286539_3286851_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286884_3287145_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287294_3288428_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288498_3289635_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289800_3290595_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290657_3291101_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291216_3292167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292289_3292697_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292769_3294965_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295186_3296137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296096_3296621_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296752_3297724_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297843_3300288_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300303_3300894_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3301137_3302088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	3317534	3417647	4104234	tail,protease,terminase,transposase,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3317534_3318485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319216_3319594_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319578_3320280_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320423_3321116_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321115_3322219_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322328_3324701_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324697_3326257_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326281_3327079_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327110_3328256_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328360_3329803_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329805_3331035_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333172_3334123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335252_3335810_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335785_3336136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336304_3337099_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337095_3338145_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338144_3338834_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338920_3339418_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339449_3340766_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340782_3341757_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341793_3342252_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342251_3342932_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342934_3343363_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343415_3345146_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345211_3345784_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345764_3346451_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346806_3347478_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347806_3348028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348027_3348309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348305_3348821_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348820_3349372_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349350_3349593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349597_3350410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350409_3350673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350713_3350911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350891_3351308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351312_3355269_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355261_3355651_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355647_3356181_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356248_3356608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356617_3359230_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359255_3359546_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359563_3359893_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359902_3360421_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360675_3361176_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361183_3361606_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361602_3362001_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361997_3362393_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3362392_3362581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362594_3363077_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363139_3363391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364065_3365016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365444_3366047_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366169_3366412_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366417_3367473_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367501_3368920_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368922_3370200_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370186_3370672_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371311_3372262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372279_3372501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3372518_3373208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373200_3373452_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3374006_3374618_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374689_3374896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375147_3376098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376196_3377270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377437_3378232_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378271_3378796_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378788_3380531_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380740_3381499_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381501_3382209_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382225_3383107_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383117_3383876_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383844_3384600_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384669_3386088_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386109_3386760_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386893_3387229_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387317_3388268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388344_3390165_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390169_3391243_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391365_3392334_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392407_3393319_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393337_3393910_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393990_3394539_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394538_3396128_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396197_3396437_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396477_3397503_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397568_3398750_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398846_3399299_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399308_3400649_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3400965_3402003_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402384_3402744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402827_3403769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403843_3404794_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405087_3406182_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3406272_3407145_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407166_3408006_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408081_3409599_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409695_3410796_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410812_3411235_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3411257_3411470_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411516_3412437_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412619_3413369_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413371_3413701_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3413988_3415341_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3415352_3415736_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415797_3416598_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416696_3417647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	3704263	3837189	4104234	transposase,tRNA,integrase	uncultured_Mediterranean_phage(10.34%)	116	3748906:3748923	3793546:3793563
WP_005013747.1|3704263_3705214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3705210_3705846_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3705975_3706875_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3706970_3707462_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3707508_3708474_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3709607_3710849_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3710962_3711979_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3712013_3712490_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3712632_3713541_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3713654_3714767_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3714867_3715353_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3715489_3716740_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3716841_3717354_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3717452_3718403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3718468_3719407_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3719429_3720056_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3720052_3720709_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3720705_3721308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3721314_3721902_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3722082_3722652_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3722722_3724042_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3724148_3724340_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3724591_3725881_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3726035_3727031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3727115_3727790_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3727786_3728737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3728898_3730140_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3730136_3731081_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3731199_3732150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3732109_3733039_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3733092_3733428_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3733472_3734237_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3734260_3735001_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3735008_3736562_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3736596_3737574_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3737846_3738428_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3738479_3745382_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3745828_3745960_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3746225_3746432_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3747436_3748096_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3748123_3749269_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3748906:3748923	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3749409_3749745_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3749819_3750680_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3750943_3751645_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3751814_3752210_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3752319_3753270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3753280_3753922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3754088_3754331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3754429_3755380_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3755415_3755883_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3756116_3756494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3756490_3756673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3756676_3757663_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3757659_3758307_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3758364_3758892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3758928_3760113_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3760123_3760465_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3760577_3760778_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3760774_3761764_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3763250_3765221_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3765462_3765861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3765869_3766793_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3767250_3768201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3768431_3770123_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3770171_3770444_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3770440_3770812_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3770907_3771042_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3771447_3772857_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3772859_3773969_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3774063_3776517_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3776635_3777427_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3777546_3778974_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3779012_3779984_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3780402_3781566_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3781653_3782499_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3784055_3785006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3785560_3785935_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3786009_3787068_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3787091_3788042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3790923_3792093_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3792193_3793801_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3793546:3793563	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3793847_3795869_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3795897_3796143_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3796156_3797347_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3797542_3798508_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3798530_3799670_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3799881_3800844_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3800967_3802992_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3803188_3805432_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3805710_3806169_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3807096_3809718_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3809781_3812409_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3812560_3813625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3813624_3814395_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3814403_3815237_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3815249_3816029_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3816102_3817536_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3817563_3818322_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3818377_3820228_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3820321_3820798_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3820814_3821735_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3821841_3822342_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3822715_3823408_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_023853374.1|3823421_3823562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162268689.1|3823522_3823699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3823716_3824667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3824663_3828437_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3828773_3830663_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3830674_3831568_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3831671_3832469_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3832465_3833317_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3833378_3834059_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3834095_3834422_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3834422_3835382_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3835402_3835891_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_023994644.1|3836172_3837189_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013871	Bordetella pertussis strain F657 chromosome, complete genome	4104234	4003302	4068214	4104234	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4003302_4003788_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003876_4004014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004006_4004987_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005253_4006063_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006102_4006783_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006776_4007235_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007246_4007609_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007691_4008375_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008430_4008739_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008757_4009072_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009068_4011543_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011550_4012942_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012938_4013124_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013102_4013804_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013800_4014622_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014602_4015727_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015719_4016739_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4016944_4017835_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018079_4018871_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018953_4019328_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019305_4020715_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020707_4022090_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022424_4024029_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024106_4025078_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025088_4026015_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026405_4027356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027525_4028752_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028951_4029818_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029810_4030773_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030873_4031824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031922_4032873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032971_4033922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033918_4035412_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035408_4038516_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038512_4041581_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041577_4042828_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4043008_4043761_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043802_4044447_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4044455_4045436_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045535_4046279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046361_4046709_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046806_4047649_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047693_4048581_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048607_4048796_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048893_4050351_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4050337_4051864_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051882_4052350_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052349_4053372_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053492_4054233_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054287_4055388_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055389_4056580_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056699_4057716_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058034_4058706_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058702_4059611_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059822_4060470_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4064330_4065398_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065408_4066218_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066307_4067081_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4067081_4067246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4067263_4068214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
