The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	27282	70036	4105340	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	77634	136108	4105340	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	164894	225405	4105340	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	233337	286925	4105340	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278109_278256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	555310	614610	4105340	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568420_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574128_574287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577029_577980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582127_582646_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582675_583308_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584035_585256_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586552_587290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587292_588924_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589019_590009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590005_590716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590811_591828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592099_592726_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592781_593909_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593914_599632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605742_606660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609020_609242_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609572_610589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610673_610925_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612846_614610_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	620765	674506	4105340	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620765_621716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621811_622783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622787_623468_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623605_623998_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624105_625122_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625361_626147_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626241_627651_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627661_628462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628482_629253_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629295_629763_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629759_630710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637795_638746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638742_639831_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639866_640730_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641869_642259_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642262_643045_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643078_643864_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644139_645279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645275_646067_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648679_649843_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649868_650552_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650505_651840_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653693_654644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656584_657844_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657840_659379_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659375_660572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660568_661945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661956_662973_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663041_664277_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664377_665172_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665541_665949_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666366_666639_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666808_667033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667220_668075_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668175_668478_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668522_669140_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669156_669465_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669461_671177_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671179_671797_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671897_672482_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672506_673151_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673555_674506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	723444	763394	4105340	protease,transposase,integrase,tRNA	Pseudomonas_phage(33.33%)	30	720692:720710	740580:740598
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723444_724041_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728926_732046_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735014_736226_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736409_737360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737376_737871_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737874_738132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738675_739587_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739668_739953_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740736_741687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740580:740598	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742105_744670_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744714_746568_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746900_748472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749740_749896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749913_750864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750949_751690_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751916_752864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754251_755202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|755219_755432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755395_756211_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756343_757783_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757796_758138_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758192_759848_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759999_761010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761142_761916_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762443_763394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	773321	819890	4105340	protease,transposase,tRNA,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773321_774272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774410_775163_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775401_777126_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777145_778405_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778419_779514_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779510_781637_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781649_782330_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782607_783981_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783982_785002_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785065_786037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786101_787052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787150_787993_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787992_788328_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788398_789817_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790096_791137_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791216_791468_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791578_792742_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793025_793880_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793876_794767_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794809_795721_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795747_796440_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796454_797435_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797447_799589_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799637_800606_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800596_801265_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801225_802161_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802157_803054_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803050_803773_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803763_803928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804101_804605_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804881_805997_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806139_806604_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806751_807291_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807312_808647_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808660_808966_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809390_809972_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810053_811004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|811444_812350_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|812405_814010_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|814266_815772_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|815786_816251_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|816540_817491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|817508_817697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|817653_818184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|818183_818495_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|818939_819890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	1004106	1098143	4105340	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1004106_1005057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1005159_1005822_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1005916_1006087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1006439_1007441_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1007443_1008640_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1008660_1009464_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1009544_1009841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1009871_1010435_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1010475_1011333_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1011340_1012090_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1012111_1012984_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1013012_1013792_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1013825_1014623_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1017277_1017670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1017663_1018524_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1018527_1019490_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1020266_1020956_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1021816_1022767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1023116_1023986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1024056_1024752_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1024741_1025251_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1025247_1026468_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1026415_1027318_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1028204_1029491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1029529_1030903_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1030941_1031643_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1031941_1032931_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1033031_1033493_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1033508_1034057_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1034198_1035674_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1035779_1036871_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1036874_1037657_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1037666_1038455_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1039580_1040015_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1040011_1041022_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1041065_1041992_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1042278_1042647_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1042699_1042846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1042863_1043814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1043858_1046285_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1046333_1047026_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1047098_1048298_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1048315_1049221_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1049336_1050266_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1050291_1051638_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1051665_1052415_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1052428_1053211_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1053403_1054354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1054415_1055525_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1056037_1056874_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1056943_1057909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1057905_1058856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1058873_1059044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1059241_1059784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1060819_1061770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1062011_1062380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1062425_1063550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1064684_1065437_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1065528_1066149_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1066252_1067203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1067199_1069308_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1069452_1070112_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1070143_1070608_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1070883_1071069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1071120_1071873_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1071879_1073142_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1073183_1074422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1075499_1076627_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1076637_1077465_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1077451_1078318_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1079684_1080089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1080180_1081131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1081148_1081313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1081500_1082412_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1082426_1083137_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1083133_1084378_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1084379_1084814_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1084842_1085148_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1085246_1086197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1086253_1087408_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1087482_1088433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1088964_1089762_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1089809_1090463_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1090419_1091508_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1091672_1093898_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1096175_1097072_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1097025_1097175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1097192_1098143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	1128529	1199499	4105340	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1128529_1129480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1129536_1130649_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1133032_1133983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1134573_1135350_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1135467_1135731_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1135831_1136836_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1137036_1138638_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1138663_1139422_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1139513_1140170_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1140260_1141025_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1141034_1141223_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1141278_1142322_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1142318_1142732_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1142728_1143349_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1143629_1144580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1144747_1146139_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1146211_1146790_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1146906_1148304_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1148419_1149625_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1149724_1150243_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1150337_1150583_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1150810_1151125_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1151214_1156404_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1156400_1158569_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1158624_1160940_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1160944_1162264_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1162282_1163956_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1163960_1164629_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1164785_1168607_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1168761_1168920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1168937_1169888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1169909_1171055_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1171203_1172133_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1172129_1173218_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1173214_1174018_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1174014_1174746_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1174803_1176093_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1176189_1176792_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1181344_1181683_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1182390_1182657_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1184363_1185314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1185310_1186642_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1187902_1189903_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1189895_1190537_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1190533_1190941_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1190937_1191738_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1191812_1192517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1192548_1193343_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1193339_1194290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1194388_1195339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195437_1195872_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195954_1198291_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1198482_1199499_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	1246893	1327768	4105340	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1246893_1247844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1247840_1248791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249051_1250080_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250159_1251458_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251454_1252036_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252348_1256395_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256635_1264297_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264293_1265244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266383_1266857_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266996_1267617_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1267752_1268553_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268607_1269699_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1269720_1270164_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270192_1270825_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270935_1271352_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271344_1272037_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272143_1272518_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1272594_1273404_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273499_1274444_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274482_1275454_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275544_1275982_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276040_1276922_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277925_1278786_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278818_1280201_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280197_1281217_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281589_1282084_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282091_1282832_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282912_1284517_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284556_1285345_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1286547_1287636_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1288516_1289329_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289341_1289650_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289767_1291498_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1291499_1292645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1292774_1293443_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1293564_1294032_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294167_1295550_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295546_1296671_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296667_1299304_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1299719_1300670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304416_1305028_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305250_1306711_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306807_1308400_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1308753_1309011_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309012_1310353_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310448_1311138_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311150_1312581_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314305_1315127_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315137_1316709_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316737_1317715_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317741_1318545_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318541_1319336_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319343_1320579_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1320571_1321006_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1321755_1322706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1323327_1325055_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1325166_1326525_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1326581_1326800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1326817_1327768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	1447163	1499311	4105340	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1447163_1448114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1448131_1448284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1448280_1448634_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1448646_1449009_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1449050_1449476_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1449678_1450935_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1451133_1452114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1452263_1453505_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1453603_1454554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1454562_1455258_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1458079_1458679_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1458689_1460855_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1460878_1462663_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1462662_1462752_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1463446_1463719_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1463718_1465785_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1465781_1466732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1466830_1467781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1467896_1468229_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1468225_1468912_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1468898_1469858_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1469899_1472260_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1472259_1472892_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1472993_1474334_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1474380_1475736_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1475861_1476506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1476450_1476768_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1477040_1477556_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1477649_1477811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1477826_1478582_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1478920_1479127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1479134_1479794_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1480088_1482293_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1482403_1483627_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1483749_1484724_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1484791_1485985_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1485999_1486800_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1486796_1488653_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1488649_1489255_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1489273_1490659_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1491384_1492611_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1492699_1493482_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1493580_1494531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1494557_1495331_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1495342_1496584_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1498360_1499311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	1543236	1611323	4105340	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1543236_1543725_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1543842_1544421_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1544526_1544895_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1544993_1545944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1545950_1547063_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1547749_1548952_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1548987_1549134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1549155_1551816_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1551828_1555233_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1555900_1558126_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1558172_1558499_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1558549_1559158_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1559256_1560207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1560276_1561041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1561037_1561637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1561740_1562592_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1562651_1563278_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1563274_1564225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1564323_1565436_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1565425_1566427_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1566532_1568044_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1568040_1569345_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1569456_1570017_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1570284_1570839_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1571294_1571510_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1571764_1574362_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1574358_1575546_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1576205_1576820_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1576908_1578036_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1578047_1578953_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1579845_1580796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1580977_1581730_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1581798_1582458_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1582454_1583183_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1583195_1585475_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1585499_1585703_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1585744_1586377_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1586512_1587430_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1587426_1588140_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1588377_1589148_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1589152_1589752_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1589996_1591487_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1591545_1591830_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1591967_1592123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1592395_1593322_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1593458_1594199_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1594365_1595742_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1595923_1596829_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1598480_1600283_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1600409_1601051_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1601149_1602100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1602121_1603342_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1603527_1604940_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1605003_1606071_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1606070_1607558_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1607567_1608512_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1608671_1609370_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1609447_1610353_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1610372_1611323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	1647272	1702863	4105340	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_010931070.1|1647272_1648223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1648281_1649055_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1649047_1650604_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1650600_1651551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1652877_1653480_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1653719_1654421_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1654414_1655197_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1655381_1656332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1656430_1657168_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1657357_1658116_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1658162_1659152_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1659329_1660298_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1661837_1662806_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1662814_1663756_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1664229_1665240_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1665230_1666745_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1666741_1668088_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1668090_1669125_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1669174_1670800_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1671352_1672303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1672407_1673355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1673408_1675223_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1675215_1675890_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1676019_1679094_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1679107_1679407_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1679721_1680345_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1680588_1681458_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1681435_1682380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1682465_1683392_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1683504_1684284_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1684274_1685471_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1685501_1686452_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1686673_1687363_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1687427_1688183_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1688234_1689227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1689236_1690190_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1690305_1691268_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1692669_1693098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1693094_1694045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1694338_1695076_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1695499_1696687_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1696690_1697071_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1698790_1699762_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1699775_1700489_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1700493_1701411_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1701517_1701814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1701912_1702863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	1935627	2005279	4105340	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1935627_1938285_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1938362_1939565_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1939561_1940074_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1940196_1940634_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1940910_1941861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1941959_1942910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1943163_1944969_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1945082_1945250_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1945313_1945550_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1945918_1947118_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1948633_1949584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1950035_1951037_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1951209_1952067_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1952063_1953326_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1953426_1953801_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1953873_1955061_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1955145_1955916_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1956029_1956794_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1956744_1958046_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1958042_1958849_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1960593_1961565_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1961721_1962234_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1962392_1963367_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1964367_1965162_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1965187_1965994_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1966104_1966695_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1966705_1967884_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1967986_1968361_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1968613_1969945_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1970011_1973242_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1974732_1975479_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1975563_1976025_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1976062_1977121_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1977083_1978913_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1978952_1979525_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1980949_1981771_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1982089_1983412_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1983771_1984407_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1984366_1985317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1986187_1987060_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1987137_1988277_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1988635_1989892_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1989897_1990425_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1990429_1991248_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1991247_1991970_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1991991_1992306_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1992323_1993472_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1993502_1994378_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1994374_1995694_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1995766_1996963_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1996973_1998461_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2001055_2001955_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2002092_2003058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2003156_2004107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2004328_2005279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2016775	2066171	4105340	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2016775_2017726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2018863_2019160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2019334_2020687_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2020829_2021846_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2023825_2024839_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2024925_2025831_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2025987_2026332_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2026489_2026948_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2026961_2029178_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2029174_2030236_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2030264_2031239_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2031190_2032009_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2032021_2032630_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2032804_2033200_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2033218_2034658_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2034686_2035034_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2035052_2036003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036655_2037606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2037689_2039507_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2039580_2040228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2040240_2041170_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2041339_2041804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2042051_2042732_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2042780_2044472_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2044487_2045039_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2045035_2045407_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2045519_2046356_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2046366_2046891_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2046988_2047168_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2047297_2048272_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2048402_2048759_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2048748_2049624_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2049722_2050607_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2050628_2051924_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2052872_2053523_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2053610_2055131_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2055388_2057254_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2058299_2059250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2059267_2059408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2060222_2060582_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2060569_2062006_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2062002_2062656_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2062652_2063846_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2063949_2065224_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2065220_2066171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2077375	2118066	4105340	tRNA,transposase,protease	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2077375_2078326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2078424_2079375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2079334_2079748_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2080032_2080332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2080741_2083024_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2083709_2085740_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2085759_2085972_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2086249_2086789_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2086902_2088198_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2088274_2089432_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2089615_2090515_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2090533_2091838_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2091803_2092910_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2092997_2093234_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2093372_2094443_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2094446_2095802_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2095828_2096989_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2096991_2097630_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2097631_2098918_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2098976_2100272_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2100278_2100785_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2100781_2101930_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2101957_2102383_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2102705_2105588_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2105680_2106436_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2107201_2108551_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2108649_2109600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2109698_2110649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2110722_2111196_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2111221_2112430_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2112426_2113200_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2113199_2113823_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2113988_2114249_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2114552_2115134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2115200_2115455_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2115441_2118066_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2145849	2211398	4105340	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2145849_2146800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2147000_2147810_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2147934_2148885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2148881_2149775_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2149899_2150094_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2150093_2150435_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2150444_2152307_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2152436_2152949_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2152951_2153275_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2153276_2153687_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2153724_2154936_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2154953_2155466_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2155681_2156173_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2156425_2158462_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2158539_2159742_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2159870_2160521_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2162078_2163029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2163599_2163812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2163829_2164561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2164595_2165237_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2165229_2165898_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2168110_2168887_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2168908_2170066_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2170062_2170494_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2170490_2171294_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2171307_2171709_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2171775_2172747_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2172812_2174036_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2174263_2175214_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2175337_2177791_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2177979_2179284_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2179388_2180042_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2180044_2181355_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2181551_2182112_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2182223_2182424_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2182769_2183336_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2183419_2183623_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2183929_2184250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2184291_2184573_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2184647_2185904_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2186286_2186616_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2188186_2189008_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2189007_2190147_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2190153_2191050_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2191046_2192972_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2193331_2195944_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2195996_2198297_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2198293_2199502_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2199763_2200138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2200134_2201085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2201183_2203178_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2203237_2204203_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2204192_2207054_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2207056_2207563_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2207667_2208876_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2208877_2209816_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2209977_2210451_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2210447_2211398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2224899	2259511	4105340	transposase,tRNA	uncultured_Mediterranean_phage(18.18%)	32	NA	NA
WP_005012067.1|2224899_2225850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2225948_2226899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2227673_2228342_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2228323_2230339_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2230521_2231271_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2231283_2232147_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2232150_2233566_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2233699_2234428_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2234566_2234767_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2234942_2235341_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2235364_2236765_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2236883_2237636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2237924_2238524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2238628_2239408_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2239404_2240289_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2240306_2241086_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2241070_2241829_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2241954_2242602_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2242869_2243886_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2243983_2245024_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2245158_2246451_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2247810_2248194_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2248211_2248799_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2248836_2249787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2249885_2250446_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2250442_2250988_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2251183_2252212_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2252252_2253593_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2253701_2254706_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2254812_2257413_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2257511_2258462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930522.1|2258560_2259511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2506089	2564333	4105340	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2506089_2507040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507519_2508176_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508190_2509858_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509860_2510490_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510701_2511796_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511940_2512753_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2512756_2514460_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2514510_2515641_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515827_2516904_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2516985_2517636_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517650_2519054_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519337_2520156_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2520152_2520857_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521756_2522872_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522905_2523280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523302_2524460_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524472_2524706_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525340_2528310_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528324_2528534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528685_2529315_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2529311_2531402_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531425_2532106_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532102_2532663_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532669_2533767_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533919_2534513_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534509_2535802_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535815_2536358_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536367_2537204_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537237_2538299_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538340_2539393_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539408_2539711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539852_2540803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2540820_2540985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2540981_2542676_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542672_2543758_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543805_2544705_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544715_2545360_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546381_2549624_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549634_2550789_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551015_2551978_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552076_2553027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553125_2554076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554085_2554775_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554834_2555272_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555317_2556211_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556258_2557431_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557427_2558582_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2558778_2559129_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559118_2559553_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559569_2560520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560667_2561135_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561115_2562273_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562338_2563265_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563382_2564333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2606613	2673113	4105340	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606613_2607564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607933_2608506_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608508_2609519_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609511_2610012_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610022_2610364_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2610375_2611167_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611183_2611453_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611475_2612264_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612310_2613327_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613543_2614986_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615164_2616784_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616904_2618725_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618803_2620336_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2620369_2622016_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622085_2623108_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623125_2624259_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624261_2624951_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624950_2625736_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625779_2626544_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626582_2628004_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628069_2628774_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628821_2629241_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629253_2629661_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629844_2630555_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630681_2630972_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630989_2631472_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635977_2637132_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637437_2638454_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638700_2639489_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639555_2640236_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640232_2641003_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641101_2642052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642107_2643025_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643035_2644214_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644233_2645229_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646817_2647426_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647413_2648454_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648471_2649434_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649430_2650624_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650620_2651418_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651443_2652430_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652448_2654488_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2654689_2655370_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655383_2656295_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656291_2656870_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657008_2657914_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657921_2661341_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661328_2663929_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664884_2665517_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665910_2666669_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2666665_2667868_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668055_2669006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669913_2671059_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671045_2671801_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671917_2672097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672162_2673113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2872501	2945824	4105340	protease,transposase,tRNA	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2872501_2873857_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875335_2876058_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876112_2877096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877225_2878176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878172_2879075_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879162_2879921_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879933_2881025_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881122_2882550_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882779_2883994_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884039_2886910_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889320_2889809_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889934_2892631_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892785_2895068_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2895239_2895863_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2895961_2896912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896958_2897513_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897580_2898426_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898495_2899464_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2899463_2900327_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2903159_2907086_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907821_2911052_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911333_2912161_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912194_2912890_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912882_2914163_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914172_2915150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915131_2916832_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916934_2918038_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918068_2918824_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918830_2920351_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920393_2920696_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920692_2921325_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921403_2923269_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923265_2924060_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924088_2925204_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926108_2926987_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926986_2927811_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927978_2928929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929141_2931991_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931972_2932701_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932841_2934305_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934301_2934673_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934690_2936004_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936040_2936499_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2936453_2936594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2936611_2937562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937558_2938572_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938711_2939698_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940056_2940764_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941344_2942295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942446_2943049_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943067_2943700_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943744_2943996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943937_2945824_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 24
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	2957549	3007163	4105340	transposase,tRNA,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2957549_2958500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958526_2958991_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960197_2962486_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962602_2963475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963517_2964672_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964706_2965537_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965620_2967165_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967207_2967567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967568_2967982_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968022_2968340_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968424_2969141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969404_2970826_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970892_2973640_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2973972_2974989_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975325_2975967_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976057_2977494_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977651_2978725_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978721_2979858_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2980002_2980347_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980413_2982294_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982343_2983279_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983611_2984628_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985565_2986993_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986989_2988012_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988001_2988475_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988615_2989503_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989499_2991143_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2991139_2992189_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992977_2993994_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994093_2994726_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994734_2995124_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995176_2996229_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997092_2998799_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998872_2999373_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999387_3001445_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001471_3001765_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001866_3002814_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002826_3003702_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003822_3004383_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004417_3004741_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005176_3005914_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006212_3007163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	3028114	3100608	4105340	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3028114_3029065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029107_3030283_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030504_3032295_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032307_3033969_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033981_3036687_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036979_3038734_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038730_3039357_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039353_3040205_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3040280_3042395_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042581_3043196_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043341_3043593_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043662_3045045_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045041_3048221_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049028_3049946_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3049997_3050729_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050788_3051361_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052869_3053886_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054023_3055073_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055177_3056128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056223_3056949_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057159_3057540_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057845_3058718_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058725_3059106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059259_3060534_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062021_3062930_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063727_3064792_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3066628_3067630_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067852_3068494_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068576_3070403_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070646_3071576_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071575_3072325_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072396_3073311_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073330_3074476_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074536_3075448_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075528_3076479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076577_3077162_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077196_3078186_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078182_3079124_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079120_3080341_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080383_3080698_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080889_3081249_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081250_3082966_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083153_3083825_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083839_3085168_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085164_3086064_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086150_3087236_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3087228_3088362_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3088361_3091043_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091413_3091995_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092120_3092846_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092842_3093520_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093735_3094917_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095689_3095872_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095901_3096852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096981_3097374_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097650_3098562_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098686_3099661_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099657_3100608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	3114115	3167633	4105340	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3114115_3115066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115178_3115430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115935_3117054_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117173_3117386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117545_3117767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117819_3118770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119946_3121317_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121349_3122141_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122153_3123209_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123234_3124110_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124215_3124464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124498_3125953_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125949_3126471_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126499_3127852_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128075_3130964_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133108_3134410_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3134424_3135141_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135422_3136103_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3136114_3136282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3136390_3136537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3136630_3137290_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137688_3139521_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139517_3140468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3141631_3143347_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3143357_3143849_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3143921_3144938_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3145105_3145885_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3145903_3146431_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3146724_3146994_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3147084_3149244_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3149364_3150084_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3150080_3151031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3151171_3152389_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3152382_3152994_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3153627_3154605_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3154748_3155495_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3155516_3155963_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3156750_3158982_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3159004_3159805_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3160086_3161319_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3161429_3162419_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3162449_3163838_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3165436_3166420_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3166616_3167633_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	3232091	3305253	4105340	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3232091_3233042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233038_3234058_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234067_3236776_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236923_3237580_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237678_3238629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238776_3239670_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239869_3241564_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241598_3242525_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242593_3243691_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243709_3244573_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244584_3245367_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245363_3246482_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246478_3248011_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248051_3249059_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249203_3249926_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249941_3250964_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251280_3252015_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252099_3253845_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253841_3254594_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254638_3255595_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255683_3256250_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256257_3257118_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257147_3257876_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257907_3258591_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259428_3260343_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260407_3261316_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261406_3262831_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262832_3264155_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264151_3266290_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266367_3271488_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271588_3271897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271966_3272524_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272539_3274021_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3276191_3277529_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277563_3279561_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279578_3281627_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281757_3282624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282892_3283858_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283972_3285121_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3285545_3285857_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285890_3286151_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286300_3287434_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287504_3288641_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288806_3289601_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289663_3290107_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290222_3291173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3291274_3291703_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3291775_3293971_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294192_3295143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295102_3295627_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295758_3296730_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296849_3299294_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299309_3299900_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300143_3301094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3301251_3302517_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3302550_3303648_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3304302_3305253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	3316540	3416653	4105340	protease,tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005013747.1|3316540_3317491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318222_3318600_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318584_3319286_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319429_3320122_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320121_3321225_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321334_3323707_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323703_3325263_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325287_3326085_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326116_3327262_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327366_3328809_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328811_3330041_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332178_3333129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334258_3334816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334791_3335142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335310_3336105_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336101_3337151_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337150_3337840_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337926_3338424_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338455_3339772_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339788_3340763_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340799_3341258_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341257_3341938_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341940_3342369_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342421_3344152_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344217_3344790_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344770_3345457_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345812_3346484_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346812_3347034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347033_3347315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347311_3347827_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347826_3348378_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348356_3348599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348603_3349416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349415_3349679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349719_3349917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349897_3350314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350318_3354275_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354267_3354657_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354653_3355187_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355254_3355614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355623_3358236_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358261_3358552_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358569_3358899_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358908_3359427_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359681_3360182_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360189_3360612_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360608_3361007_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361003_3361399_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3361398_3361599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361600_3362083_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362145_3362397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363071_3364022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364450_3365053_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365175_3365418_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365423_3366479_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366507_3367926_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367928_3369206_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369192_3369678_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370317_3371268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3371285_3371507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3371524_3372214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372206_3372458_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3373012_3373624_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373695_3373902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374153_3375104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375202_3376276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376443_3377238_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377277_3377802_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377794_3379537_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379746_3380505_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380507_3381215_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381231_3382113_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382123_3382882_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382850_3383606_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383675_3385094_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385115_3385766_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385899_3386235_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386323_3387274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387350_3389171_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389175_3390249_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390371_3391340_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391413_3392325_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392343_3392916_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3392996_3393545_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393544_3395134_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395203_3395443_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395483_3396509_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396574_3397756_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397852_3398305_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398314_3399655_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3399971_3401009_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401390_3401750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401833_3402775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402849_3403800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404093_3405188_+	porin	NA	NA	NA	NA	NA
WP_077108289.1|3405269_3406151_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406172_3407012_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407087_3408605_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408701_3409802_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409818_3410241_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3410263_3410476_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410522_3411443_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411625_3412375_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412377_3412707_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3412913_3414347_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3414358_3414742_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414803_3415604_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415702_3416653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013876	Bordetella pertussis strain G965 chromosome, complete genome	4105340	4027510	4080943	4105340	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4027510_4028461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028630_4029857_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030056_4030923_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030915_4031878_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031978_4032929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033027_4033978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034076_4035027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035023_4036517_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036513_4039621_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039617_4042686_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042682_4043933_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044113_4044875_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044907_4045558_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045560_4046400_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046640_4047384_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047466_4047814_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047911_4048754_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048798_4049686_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049712_4049901_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049998_4051456_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051442_4052969_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052987_4053455_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053454_4054477_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054597_4055317_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055392_4056493_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056494_4057685_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057804_4058821_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059139_4059811_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059807_4060716_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060927_4061575_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065426_4066503_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066513_4067323_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067412_4068186_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068186_4068351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068368_4069319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069207_4070230_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070219_4071374_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071413_4072826_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072950_4073817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073818_4074643_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074639_4075401_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075482_4076169_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076342_4077350_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077346_4078126_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078183_4079446_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079992_4080943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
