The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	27282	70036	4106382	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	77634	136108	4106382	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	164891	225402	4106382	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167285_168188_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169077_170508_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170541_171171_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174299_175250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176365_176893_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176984_177800_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181334_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182423_184328_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184324_187999_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188630_189053_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189080_189500_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189528_190002_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190753_193024_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194403_195354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205633_206584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	233334	286922	4106382	protease,tRNA,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233334_234285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235318_236269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236367_237165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238114_238525_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240333_241377_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241547_243650_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278106_278253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278535_278676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280423_281278_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_014905945.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	390855	448364	4106382	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417526_417796_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	590418	651609	4106382	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590418_591369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591865_592735_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592731_593553_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593752_594244_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594262_595336_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595382_596486_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596561_597182_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597202_597712_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597766_598018_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598081_599215_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599222_599609_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599605_602125_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602553_602892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602888_603395_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603456_604257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604367_605309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605402_606938_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608617_610468_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610471_611305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611304_612246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612497_613469_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613610_615899_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616205_617114_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617168_618134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618208_619870_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619941_620652_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620618_620783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620800_621751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622449_622833_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622890_623493_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624045_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627086_628136_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628283_628862_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636789_637740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637838_638639_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638700_639084_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639095_640529_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641067_641817_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643201_643624_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643640_644741_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644837_646355_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647291_648173_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648254_649349_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649642_650593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	656933	703124	4106382	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656933_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657999_658239_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662102_663071_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666168_667119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669836_670592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673905_675648_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678338_679289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679540_679747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679818_680430_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680984_681236_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681228_681918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681935_682157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682174_683125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683764_684250_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684236_685514_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689420_690371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691843_692044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692830_693253_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694015_694534_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694543_694873_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694890_695181_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698255_698789_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698785_699175_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	709290	763220	4106382	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712679_713654_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713670_714987_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720313_721264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723401_724631_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724633_726076_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726180_727326_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727357_728155_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728179_729739_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729735_732108_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732217_733321_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733320_734013_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734156_734858_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734842_735220_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735951_736902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737061_737934_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738274_738493_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738532_739912_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739953_741351_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741390_743043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743046_743931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743930_744872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744950_746570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746736_747552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747619_748189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748189_749140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750925_752191_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761739_762168_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	854097	903361	4106382	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854097_855048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855065_855620_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855621_856056_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856052_856487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856470_857274_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857290_858106_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858102_858918_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859064_859766_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859793_861752_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861834_862785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863005_863674_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863797_864904_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864916_868030_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868026_869520_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869534_870206_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870249_870744_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870884_871532_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871635_873684_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873680_875693_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875718_877053_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877161_878154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878220_880305_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880329_881301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881429_882461_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882464_883616_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883786_884710_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884787_885612_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885808_886825_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887021_888005_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889603_890992_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891022_892012_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892122_893355_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893636_894437_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894459_896691_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897478_897925_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897946_898693_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898836_899814_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900447_901059_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901052_902270_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902410_903361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	912973	977913	4106382	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912973_913924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913920_915753_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916151_916811_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916904_917051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917159_917327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917338_918019_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918300_919017_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919031_920333_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922477_925366_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925589_926942_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926970_927492_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927488_928943_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928977_929226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929331_930207_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930232_931288_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931300_932092_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932124_933495_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934671_935622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935674_935896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936055_936268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936387_937506_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938011_938263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077082435.1|938375_939326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939322_939706_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939760_941575_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941724_942552_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942597_943578_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943574_943787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943783_944965_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945128_945863_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945864_948477_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948612_950526_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951141_951552_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951649_952735_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952833_953784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953780_954755_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954879_955791_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956067_956460_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956589_957540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957569_957752_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958524_959706_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959921_960599_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960595_961321_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961446_962028_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962398_965080_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965079_966213_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966205_967291_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967377_968277_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968273_969602_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969616_970288_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970475_972191_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972192_972552_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972743_973058_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973100_974321_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974317_975259_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975255_976245_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976279_976864_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976962_977913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	997313	1060464	4106382	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|997313_998264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998368_999418_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999555_1000572_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002080_1002653_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002712_1003444_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003495_1004413_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005220_1008400_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008396_1009779_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009848_1010100_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010245_1010860_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011046_1013161_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013236_1014088_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014084_1014711_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014707_1016462_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016754_1019460_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019472_1021134_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021146_1022937_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023158_1024334_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024376_1025327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025425_1026166_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026360_1028397_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028414_1029425_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029542_1030736_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030765_1031539_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031535_1032726_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032751_1033690_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033686_1036035_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036189_1036831_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036934_1038068_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038160_1038313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038344_1038893_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038911_1039397_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039574_1040513_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040515_1040833_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040878_1041823_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043503_1044154_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044207_1044543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044539_1045400_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045416_1045698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045771_1046035_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046278_1047229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047527_1048265_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048700_1049024_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049058_1049619_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049739_1050615_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050627_1051575_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051676_1051970_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051996_1054054_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054068_1054569_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054642_1056349_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057212_1058265_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058317_1058707_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058715_1059348_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059447_1060464_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1066448	1125463	4106382	holin,transposase,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1066448_1067876_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068813_1069830_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070162_1071098_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071147_1073028_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073094_1073439_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073583_1074720_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074716_1075790_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075947_1077384_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077474_1078116_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079801_1082549_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095909_1096047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109445_1109697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112677_1113385_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116847_1116988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117437_1118751_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120740_1121469_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121450_1124300_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124512_1125463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1156529	1235154	4106382	tRNA,transposase	Erysipelothrix_phage(20.0%)	55	NA	NA
WP_010930198.1|1156529_1157480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157578_1158202_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158377_1160660_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160814_1163511_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163636_1164125_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166535_1169406_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169451_1170666_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170895_1172323_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172420_1173512_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173524_1174283_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174370_1175273_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175269_1176220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176349_1177333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177387_1178110_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179588_1180944_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181024_1183400_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183564_1185640_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185701_1186502_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186603_1187566_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187553_1188309_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188416_1190054_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190121_1190859_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190961_1191537_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191709_1192246_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192248_1192593_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192608_1193454_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193492_1194872_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194949_1195831_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195929_1196880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196876_1197287_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197394_1198249_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198241_1199204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199249_1200374_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200479_1201358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201482_1202262_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202415_1203837_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204271_1205969_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206195_1207137_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207463_1208210_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208217_1209144_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209265_1210183_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210222_1211176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211200_1211779_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213452_1214061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214138_1214492_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214575_1215565_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215561_1215750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215767_1216718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216804_1217755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1218961_1219990_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1220069_1221368_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1221364_1221946_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1222258_1226305_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1226545_1234207_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1234203_1235154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1269629	1328430	4106382	transposase	Salmonella_phage(28.57%)	50	NA	NA
WP_010931070.1|1269629_1270580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274326_1274938_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275160_1276621_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276717_1278310_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278663_1278921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278922_1280263_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280358_1281048_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281060_1282491_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284215_1285037_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285047_1286619_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286647_1287625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287651_1288455_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288451_1289246_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289253_1290489_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290481_1290916_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291665_1292616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293237_1294965_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295076_1296435_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296491_1296710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296727_1297678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297718_1298789_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298811_1299690_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299861_1300833_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300995_1301838_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301999_1302680_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302673_1303843_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303839_1304871_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304914_1306156_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306190_1307723_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307803_1308427_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308457_1309069_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309104_1309575_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310006_1311011_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311047_1312562_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312565_1313525_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313553_1314357_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314358_1315993_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316076_1317138_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317336_1317606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317609_1318134_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010931011.1|1319495_1320530_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320638_1321277_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321571_1321799_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321921_1322635_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322879_1323830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323933_1324215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324329_1325778_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325888_1326839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1326835_1327285_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1327479_1328430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1417072	1469225	4106382	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1417072_1418023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418040_1418193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418189_1418543_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418555_1418918_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418959_1419385_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419587_1420844_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421042_1422023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422172_1423414_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423512_1424463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424471_1425167_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427988_1428588_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428598_1430764_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430787_1432572_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432571_1432661_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433355_1433628_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433627_1435694_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435690_1436641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436739_1437690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437805_1438138_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438134_1438821_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438807_1439767_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439808_1442169_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442168_1442801_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442902_1444243_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444289_1445645_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445770_1446415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446359_1446677_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446949_1447465_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447558_1447720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447735_1448491_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448829_1449036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449043_1449703_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449997_1452202_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452312_1453536_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453658_1454633_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454700_1455894_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455908_1456709_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456705_1458562_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458558_1459164_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459182_1460568_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461293_1462520_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462608_1463391_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463489_1464440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464466_1465240_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465251_1466493_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468274_1469225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1513150	1581236	4106382	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1513150_1513639_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513756_1514335_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514440_1514809_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514907_1515858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515864_1516977_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517663_1518866_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518901_1519048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519069_1521730_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1521742_1525147_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525814_1528040_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528086_1528413_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528463_1529072_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529170_1530121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530190_1530955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1530951_1531551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531654_1532506_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532565_1533192_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533188_1534139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534237_1535350_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535339_1536341_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536446_1537958_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537954_1539259_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539370_1539931_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540198_1540753_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541208_1541424_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541678_1544276_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544272_1545460_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1546118_1546733_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1546821_1547949_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547960_1548866_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549758_1550709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550890_1551643_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551711_1552371_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552367_1553096_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553108_1555388_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555412_1555616_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555657_1556290_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556425_1557343_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557339_1558053_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558290_1559061_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559065_1559665_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559909_1561400_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561458_1561743_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1561880_1562036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562308_1563235_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563371_1564112_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564278_1565655_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565836_1566742_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568393_1570196_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1570322_1570964_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571062_1572013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572034_1573255_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573440_1574853_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574916_1575984_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575983_1577471_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577480_1578425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578584_1579283_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579360_1580266_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580285_1581236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1617185	1672776	4106382	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617185_1618136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618194_1618968_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618960_1620517_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620513_1621464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622790_1623393_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623632_1624334_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624327_1625110_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625294_1626245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626343_1627081_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627270_1628029_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628075_1629065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629242_1630211_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631750_1632719_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632727_1633669_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634142_1635153_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635143_1636658_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636654_1638001_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1638003_1639038_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639087_1640713_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641265_1642216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642320_1643268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643321_1645136_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645128_1645803_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645932_1649007_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649020_1649320_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649634_1650258_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1650501_1651371_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651348_1652293_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652378_1653305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653417_1654197_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654187_1655384_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655414_1656365_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656586_1657276_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657340_1658096_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658147_1659140_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659149_1660103_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660218_1661181_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662582_1663011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663007_1663958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1664251_1664989_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665412_1666600_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1666603_1666984_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668703_1669675_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669688_1670402_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670406_1671324_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671430_1671727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671825_1672776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1905539	1975190	4106382	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1905539_1908197_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1908274_1909477_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1909473_1909986_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1910108_1910546_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1910822_1911773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1911871_1912822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1913075_1914881_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1914994_1915162_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1915225_1915462_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1915830_1917030_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1918544_1919495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1919946_1920948_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1921120_1921978_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1921974_1923237_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1923337_1923712_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1923784_1924972_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1925056_1925827_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1925940_1926705_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1926655_1927957_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1927953_1928760_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1930504_1931476_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1931632_1932145_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1932303_1933278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1934278_1935073_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1935098_1935905_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1936015_1936606_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1936616_1937795_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1937897_1938272_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1938524_1939856_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1939922_1943153_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1944643_1945390_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1945474_1945936_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1945973_1947032_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1946994_1948824_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1948863_1949436_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1950860_1951682_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1952000_1953323_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1953682_1954318_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1954277_1955228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1956098_1956971_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1957048_1958188_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1958546_1959803_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1959808_1960336_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1960340_1961159_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1961158_1961881_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1961902_1962217_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1962234_1963383_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1963413_1964289_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1964285_1965605_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1965677_1966874_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1966884_1968372_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1970966_1971866_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1972003_1972969_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1973067_1974018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1974239_1975190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	1986686	2036082	4106382	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1986686_1987637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1988774_1989071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1989245_1990598_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1990740_1991757_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1993736_1994750_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1994836_1995742_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1995898_1996243_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1996400_1996859_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1996872_1999089_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1999085_2000147_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2000175_2001150_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2001101_2001920_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2001932_2002541_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2002715_2003111_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2003129_2004569_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2004597_2004945_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2004963_2005914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2006566_2007517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2007600_2009418_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2009491_2010139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2010151_2011081_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2011250_2011715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2011962_2012643_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2012691_2014383_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2014398_2014950_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2014946_2015318_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2015430_2016267_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2016277_2016802_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2016899_2017079_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2017208_2018183_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2018313_2018670_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2018659_2019535_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2019633_2020518_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2020539_2021835_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2022783_2023434_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2023521_2025042_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2025299_2027165_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2028210_2029161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2029178_2029319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2030133_2030493_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2030480_2031917_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2031913_2032567_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2032563_2033757_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2033860_2035135_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2035131_2036082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	2047286	2087977	4106382	protease,tRNA,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2047286_2048237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2048335_2049286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2049245_2049659_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2049943_2050243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2050652_2052935_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2053620_2055651_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2055670_2055883_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2056160_2056700_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2056813_2058109_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2058185_2059343_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2059526_2060426_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2060444_2061749_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2061714_2062821_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2062908_2063145_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2063283_2064354_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2064357_2065713_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2065739_2066900_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2066902_2067541_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2067542_2068829_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2068887_2070183_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2070189_2070696_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2070692_2071841_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2071868_2072294_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2072616_2075499_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2075591_2076347_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2077112_2078462_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2078560_2079511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2079609_2080560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2080633_2081107_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2081132_2082341_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2082337_2083111_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2083110_2083734_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2083899_2084160_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2084463_2085045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2085111_2085366_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2085352_2087977_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 21
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	2115760	2181309	4106382	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2115760_2116711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2116911_2117721_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2117845_2118796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2118792_2119686_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2119810_2120005_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2120004_2120346_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2120355_2122218_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2122347_2122860_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2122862_2123186_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2123187_2123598_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2123635_2124847_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2124864_2125377_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2125592_2126084_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2126336_2128373_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2128450_2129653_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2129781_2130432_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2131989_2132940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2133510_2133723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2133740_2134472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2134506_2135148_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2135140_2135809_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2138021_2138798_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2138819_2139977_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2139973_2140405_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2140401_2141205_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2141218_2141620_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2141686_2142658_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2142723_2143947_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2144174_2145125_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2145248_2147702_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2147890_2149195_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2149299_2149953_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2149955_2151266_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2151462_2152023_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2152134_2152335_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2152680_2153247_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2153330_2153534_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2153840_2154161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2154202_2154484_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2154558_2155815_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2156197_2156527_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2158097_2158919_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2158918_2160058_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2160064_2160961_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2160957_2162883_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2163242_2165855_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2165907_2168208_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2168204_2169413_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2169674_2170049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2170045_2170996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171094_2173089_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173148_2174114_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174103_2176965_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176967_2177474_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177578_2178787_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178788_2179727_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179888_2180362_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180358_2181309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	2575477	2641977	4106382	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575477_2576428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576797_2577370_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577372_2578383_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578375_2578876_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578886_2579228_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2579239_2580031_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580047_2580317_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580339_2581128_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010930525.1|2581174_2582191_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582407_2583850_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584028_2585648_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585768_2587589_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587667_2589200_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2589233_2590880_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590949_2591972_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591989_2593123_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593125_2593815_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593814_2594600_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594643_2595408_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595446_2596868_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596933_2597638_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597685_2598105_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598117_2598525_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598708_2599419_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599545_2599836_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599853_2600336_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604841_2605996_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606301_2607318_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607564_2608353_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608419_2609100_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609096_2609867_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609965_2610916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610971_2611889_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611899_2613078_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613097_2614093_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615681_2616290_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616277_2617318_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617335_2618298_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618294_2619488_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619484_2620282_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620307_2621294_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621312_2623352_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2623553_2624234_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624247_2625159_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625155_2625734_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625872_2626778_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626785_2630205_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630192_2632793_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633748_2634381_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634774_2635533_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2635529_2636732_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636919_2637870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638777_2639923_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639909_2640665_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640781_2640961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641026_2641977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	2805582	2860099	4106382	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2805582_2806533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806861_2807467_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2807520_2808834_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808908_2809379_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2809378_2810167_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2810177_2811830_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811917_2812868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2814029_2814536_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2814532_2815297_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2815312_2815597_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2815661_2816651_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2816822_2817752_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2817723_2818410_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2818443_2818989_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2819033_2820299_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2820295_2821198_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2822379_2823324_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2823418_2824936_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2824977_2826606_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2826713_2827595_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2830707_2831082_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2831106_2831445_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2831488_2833123_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2833161_2834508_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2834615_2836037_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2836106_2836691_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2836793_2837744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837878_2838985_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2838995_2840093_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2840237_2841443_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2841449_2841971_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2841967_2842459_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2842455_2842707_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2842687_2843173_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2843308_2846770_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846787_2847672_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2847681_2848113_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2848359_2848863_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848940_2850341_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2850415_2851291_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2851287_2852295_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852762_2853068_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2853158_2853749_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853939_2854956_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2855147_2857484_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2857566_2858001_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2858099_2859050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2859148_2860099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	2868124	2924909	4106382	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2868124_2869075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870781_2871048_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2871755_2872094_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2876646_2877249_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2877345_2878635_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2878692_2879424_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2879420_2880224_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2880220_2881309_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2881305_2882235_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2882383_2883529_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2883550_2884501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2884518_2884677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2884831_2888653_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2888809_2889478_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2889482_2891156_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2891174_2892494_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2892498_2894814_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894869_2897038_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2897034_2902224_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2902313_2902628_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902855_2903101_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2903195_2903714_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903813_2905019_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2905134_2906532_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2906648_2907227_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2907299_2908691_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908858_2909809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2910089_2910710_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2910706_2911120_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2911116_2912160_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2912215_2912404_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2912413_2913178_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2913268_2913925_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2914016_2914775_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914800_2916402_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2916602_2917607_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2917707_2917971_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2918088_2918865_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2919455_2920406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922789_2923902_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923958_2924909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	2955295	3000035	4106382	transposase	Planktothrix_phage(33.33%)	42	NA	NA
WP_005012067.1|2955295_2956246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2956344_2957295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_181902613.1|2957312_2957462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957415_2958312_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960589_2962815_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962979_2964068_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964024_2964678_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964725_2965523_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966054_2967005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967079_2968234_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|2968290_2969241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969339_2969645_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969673_2970108_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970109_2971354_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971350_2972061_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972075_2972987_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973349_2973754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973750_2974209_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974215_2975124_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975120_2975987_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975973_2976801_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976811_2977939_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979016_2980255_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980296_2981559_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981565_2982318_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982369_2982555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982830_2983295_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983326_2983986_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984130_2986239_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986235_2987186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987289_2987910_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988001_2988754_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989888_2991013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991058_2991427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991668_2992619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993654_2994197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994394_2994565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994582_2995533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995529_2996495_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996564_2997401_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997913_2999023_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|2999084_3000035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	3381032	3434773	4106382	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381032_3381983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382387_3383032_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383056_3383641_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383741_3384359_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384361_3386077_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386073_3386382_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386398_3387016_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387060_3387363_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387463_3388318_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388505_3388730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388899_3389172_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389589_3389997_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390366_3391161_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391261_3392497_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392565_3393582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393593_3394970_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394966_3396163_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396159_3397698_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397694_3398954_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400894_3401845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402611_3403706_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403698_3405033_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404986_3405670_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405695_3406859_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406855_3407857_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407856_3408729_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408725_3409475_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409471_3410263_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410259_3411399_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411674_3412460_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412493_3413276_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413279_3413669_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414808_3415672_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415707_3416796_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416792_3417743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418096_3421075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422001_3422880_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424828_3425779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425775_3426243_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426285_3427056_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427076_3427877_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427887_3429297_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429391_3430177_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430416_3431433_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431540_3431933_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432070_3432751_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432755_3433727_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433822_3434773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	3440927	3500226	4106382	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440927_3442691_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442802_3443681_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443793_3444609_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444612_3444864_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444948_3445965_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446295_3446517_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448877_3449795_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450292_3451501_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451580_3453152_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453269_3454205_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454393_3455338_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455905_3461623_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461628_3462756_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462811_3463438_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463709_3464726_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464821_3465532_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465528_3466518_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466613_3468245_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468247_3468985_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469140_3470013_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470281_3471502_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471498_3472158_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472229_3472862_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472891_3473410_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473420_3474530_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474576_3475431_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475432_3476335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929969.1|3477557_3478508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3480263_3481253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481249_3481408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481428_3482217_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482213_3483245_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483263_3483827_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483882_3485403_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485666_3486371_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486378_3487116_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487221_3487596_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487638_3488928_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488924_3490094_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490090_3490930_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490989_3491925_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491937_3492888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492986_3493949_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493980_3494340_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494464_3495367_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495368_3497141_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497175_3497952_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499275_3500226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	3515164	3573237	4106382	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515164_3516115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516243_3517377_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517420_3518326_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518328_3520029_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520025_3520946_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520953_3521931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521989_3523024_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3524998_3525235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525361_3526225_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526313_3527135_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527214_3527952_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527948_3528941_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529054_3529717_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529761_3530910_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929956.1|3533233_3534184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534524_3535475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535573_3536524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536820_3537318_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537360_3539136_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539143_3540010_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540016_3540751_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541920_3542715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543004_3543595_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543628_3544957_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545031_3546177_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546288_3547287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547249_3547684_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549200_3550085_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550081_3551287_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551283_3552144_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552256_3554047_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554087_3554753_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554753_3555062_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555227_3556514_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557947_3558898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560849_3562064_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562169_3563159_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563155_3563764_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563776_3564406_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564402_3565023_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565054_3565846_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566697_3567153_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567171_3568098_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568151_3569438_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570368_3571241_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571237_3572188_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572286_3573237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013877	Bordetella pertussis strain H348 chromosome, complete genome	4106382	4028552	4081985	4106382	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028552_4029503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029672_4030899_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031098_4031965_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031957_4032920_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033020_4033971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034069_4035020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035118_4036069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036065_4037559_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037555_4040663_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040659_4043728_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043724_4044975_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045155_4045917_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045949_4046600_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046602_4047442_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047682_4048426_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048508_4048856_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048953_4049796_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049840_4050728_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050754_4050943_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051040_4052498_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052484_4054011_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054029_4054497_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054496_4055519_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055639_4056359_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056434_4057535_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057536_4058727_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058846_4059863_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060181_4060853_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060849_4061758_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061969_4062617_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066468_4067545_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067555_4068365_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068454_4069228_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069228_4069393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069410_4070361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070249_4071272_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071261_4072416_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072455_4073868_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073992_4074859_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074860_4075685_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075681_4076443_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076524_4077211_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077384_4078392_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078388_4079168_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079225_4080488_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081034_4081985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
