The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	27282	70036	4107431	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	77634	136108	4107431	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_077069111.1|132682_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	164893	225404	4107431	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	233336	286924	4107431	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	468502	586397	4107431	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|468502_469453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|469551_470502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|471224_472499_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|472585_473668_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|473678_474491_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|474527_474854_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|474858_475419_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|475659_476652_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|476670_477666_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|477681_479058_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|479050_481432_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|481448_481838_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|481964_482195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|482299_483250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|483348_484299_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|484295_485168_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|486098_487385_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|487438_488365_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|488383_488839_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|489690_490482_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|490513_491134_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|491130_491760_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|491772_492381_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|492377_493367_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|493472_494687_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|496638_497589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499022_500309_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|500474_500783_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|500783_501449_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|501489_503280_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503392_504253_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|504249_505455_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505451_506336_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507852_508287_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508249_509248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509359_510505_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510579_511908_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511941_512532_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512821_513616_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514785_515520_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515526_516393_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516400_518176_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518218_518716_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|519012_519963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520061_521012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521352_522303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524626_525775_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|525819_526482_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526595_527588_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527584_528322_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|528401_529223_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529311_530175_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530301_530538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532512_533547_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|533605_534583_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534590_535511_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|535507_537208_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|537210_538116_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538159_539293_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539421_540372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540470_542540_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542582_544685_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544991_546068_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546143_547028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547210_547633_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547642_549043_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549085_549991_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550089_551631_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551665_552205_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552217_552688_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552825_553068_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553184_554066_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554138_554459_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568420_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574128_574287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|577029_577980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582127_582646_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582675_583308_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584035_585256_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	590811	654644	4107431	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|590811_591828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592099_592726_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592781_593909_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593914_599632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605742_606660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609020_609242_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609572_610589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610673_610925_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612846_614610_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|614725_616066_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|617135_618560_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|618559_619261_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|620765_621716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621811_622783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622787_623468_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623605_623998_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624105_625122_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625361_626147_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626241_627651_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627661_628462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628482_629253_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629295_629763_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629759_630710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637795_638746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638742_639831_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639866_640730_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641869_642259_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642262_643045_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643078_643864_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644139_645279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645275_646067_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648679_649843_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649868_650552_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650505_651840_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653693_654644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	673555	750864	4107431	integrase,transposase,protease,tRNA	Bacillus_phage(20.0%)	57	720692:720710	740580:740598
WP_023995489.1|673555_674506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674604_676080_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677667_678555_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678557_679499_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679544_681110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682887_684213_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684395_685853_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685816_686314_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686344_687316_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|687368_687806_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687929_688598_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689326_690430_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|690532_691810_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691821_692847_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692848_694219_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|694219_695356_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695402_697328_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697324_698446_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698442_699597_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699593_700724_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700731_702297_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702303_703686_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703964_704576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704667_706083_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706100_706811_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706807_708130_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708209_710171_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710296_711610_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711718_713017_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713199_714108_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714117_714327_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714338_716018_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716119_717073_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717163_717991_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717989_719876_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719872_720472_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720520_721420_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721628_722579_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722701_723316_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723444_724041_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728926_732046_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735014_736226_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736409_737360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737376_737871_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737874_738132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738675_739587_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739668_739953_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740736_741687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740580:740598	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742105_744670_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744714_746568_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746900_748472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749913_750864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	996797	1099178	4107431	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996797_997913_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998013_998832_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998929_999541_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999700_1001077_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001139_1001598_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001682_1002378_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002439_1002721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003283_1004036_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004080_1005157_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034555_1035104_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035245_1036721_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043910_1044861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044905_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052712_1053462_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054450_1055401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055462_1056572_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057990_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058952_1059903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061866_1062817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065731_1066484_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067299_1068250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|1081227_1082178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086293_1087244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087300_1088455_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088529_1089480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1089999_1090797_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090844_1091498_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091454_1092543_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092707_1094933_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097210_1098107_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098227_1099178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	1129564	1200534	4107431	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129564_1130515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130571_1131684_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134067_1135018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135608_1136385_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136502_1136766_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136866_1137871_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138071_1139673_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139698_1140457_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140548_1141205_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141295_1142060_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142069_1142258_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142313_1143357_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143353_1143767_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143763_1144384_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144664_1145615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145782_1147174_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147246_1147825_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147941_1149339_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149454_1150660_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150759_1151278_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151372_1151618_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151845_1152160_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152249_1157439_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157435_1159604_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159659_1161975_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161979_1163299_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163317_1164991_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1164995_1165664_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165820_1169642_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169972_1170923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170944_1172090_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172238_1173168_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173164_1174253_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174249_1175053_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175049_1175781_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175838_1177128_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177224_1177827_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182379_1182718_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183425_1183692_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185398_1186349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186345_1187677_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188937_1190938_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190930_1191572_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191568_1191976_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191972_1192773_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192847_1193552_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193583_1194378_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194374_1195325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195423_1196374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196472_1196907_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1196989_1199326_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199517_1200534_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	1247928	1328803	4107431	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247928_1248879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248875_1249826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250086_1251115_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251194_1252493_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252489_1253071_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253383_1257430_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257670_1265332_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265328_1266279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267418_1267892_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268031_1268652_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268787_1269588_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269642_1270734_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270755_1271199_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271227_1271860_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271970_1272387_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272379_1273072_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273178_1273553_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273629_1274439_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274534_1275479_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275517_1276489_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276579_1277017_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277075_1277957_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278960_1279821_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279853_1281236_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281232_1282252_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282624_1283119_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283126_1283867_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283947_1285552_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285591_1286380_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287582_1288671_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289551_1290364_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290376_1290685_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290802_1292533_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292534_1293680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293809_1294478_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294599_1295067_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295202_1296585_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296581_1297706_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297702_1300339_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_023996990.1|1300754_1301705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305451_1306063_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306285_1307746_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307842_1309435_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309788_1310046_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310047_1311388_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311483_1312173_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312185_1313616_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315340_1316162_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316172_1317744_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317772_1318750_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318776_1319580_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319576_1320371_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320378_1321614_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321606_1322041_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322790_1323741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324362_1326090_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326201_1327560_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327852_1328803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	1448198	1512413	4107431	transposase,protease,tRNA	Salmonella_phage(16.67%)	60	NA	NA
WP_005013747.1|1448198_1449149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449315_1449669_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449681_1450044_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450085_1450511_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450713_1451970_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452168_1453149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453298_1454540_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454638_1455589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455597_1456293_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459113_1459713_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459723_1461889_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461912_1463697_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463696_1463786_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464480_1464753_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464752_1466819_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466815_1467766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467864_1468815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468930_1469263_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469259_1469946_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469932_1470892_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470933_1473294_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473293_1473926_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474027_1475368_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475414_1476770_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476895_1477540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477484_1477802_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478074_1478590_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478683_1478845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478860_1479616_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479954_1480161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480168_1480828_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481122_1483327_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483437_1484661_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484783_1485758_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485825_1487019_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487033_1487834_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487830_1489687_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489683_1490289_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490307_1491693_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492418_1493645_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493733_1494516_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494614_1495565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495591_1496365_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496376_1497618_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1499434_1500262_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1500263_1500974_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1500970_1501570_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1501678_1502272_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1502323_1502506_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1502562_1503621_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1503620_1504607_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1504688_1505624_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1505625_1506378_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1506560_1506800_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1506989_1508219_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1508220_1508721_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1508717_1509317_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1509329_1509830_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1509829_1510888_+	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004566381.1|1510925_1512413_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 13
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	1742148	1790163	4107431	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1742148_1743099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1743197_1745798_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1745904_1746909_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1747017_1748358_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1748398_1749427_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1749622_1750168_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1750164_1750725_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1750823_1751774_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1751811_1752399_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1752416_1752800_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1754159_1755452_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1755586_1756627_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010931363.1|1756724_1757741_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1758008_1758656_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1758781_1759540_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1759524_1760304_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1760321_1761206_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1761202_1761982_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1762086_1762686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1762974_1763727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1763845_1765246_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1765269_1765668_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1765843_1766044_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1766182_1766911_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1767044_1768460_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1768463_1769327_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1769339_1770089_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1770271_1772287_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1772268_1772937_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1773711_1774662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1774760_1775711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1775859_1776198_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1776255_1776417_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1776448_1776649_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1776914_1779488_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1779558_1782108_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1784658_1785147_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1785238_1786390_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1786443_1787265_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1787303_1788533_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1788661_1789102_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1789212_1790163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	1851725	1910995	4107431	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1851725_1852676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1852800_1853610_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1853810_1854761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1856034_1857252_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1858308_1859211_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1859287_1860160_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1860290_1860659_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_077069112.1|1860716_1861763_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1861958_1863215_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1863219_1864557_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1864706_1865663_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1865765_1866698_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1866813_1867134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1867126_1867486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1867533_1869108_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1869160_1870105_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1870122_1870953_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1870945_1872580_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1872576_1873932_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1874838_1876416_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1876419_1877694_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1877791_1878166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1879881_1881015_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1881052_1881658_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1881654_1882473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1882544_1885169_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1885155_1885410_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1885476_1886058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1886361_1886622_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1886787_1887411_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1887410_1888184_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1888180_1889389_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1889414_1889888_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1889961_1890912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1891010_1891961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1892059_1893409_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1894174_1894930_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1895022_1897905_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1898227_1898653_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1898680_1899829_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1899825_1900332_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1900338_1901634_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1901692_1902979_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1902980_1903619_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1903621_1904782_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1904808_1906164_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1906167_1907238_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1907376_1907613_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1907700_1908807_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1908772_1910077_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1910095_1910995_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	1921235	1965558	4107431	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1921235_1922186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1922284_1923235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1923434_1924520_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1924535_1925297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1925293_1926253_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1926315_1926816_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1926848_1927592_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1927687_1927927_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1927940_1928093_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1928178_1929669_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1929760_1930699_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1930695_1930872_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1930874_1931537_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1933158_1933302_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1933298_1934273_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1934439_1935390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1935386_1936661_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1936764_1937958_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1937954_1938608_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1938604_1940041_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1940028_1940388_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1941202_1941343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1941360_1942311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1943356_1945222_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1945479_1947000_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1947087_1947738_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1948686_1949982_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1950003_1950888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1950986_1951862_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1951851_1952208_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1952338_1953313_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1953442_1953622_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1953719_1954244_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1954254_1955091_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1955203_1955575_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1955571_1956123_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1956138_1957830_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1957878_1958559_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1958806_1959271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1959440_1960370_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1960382_1961030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1961103_1962921_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1963004_1963955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1964607_1965558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	1995331	2059700	4107431	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1995331_1996282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1996503_1997454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1997552_1998518_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1998655_1999555_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2002149_2003637_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2003647_2004844_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2004916_2006236_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2006232_2007108_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2007138_2008287_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2008304_2008619_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2008640_2009363_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2009362_2010181_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2010185_2010713_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2010718_2011975_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2012333_2013473_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2013550_2014423_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2015293_2016244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2016203_2016839_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2017198_2018521_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2018839_2019661_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2021085_2021658_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2021697_2023527_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2023489_2024548_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2024585_2025047_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2025131_2025878_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2027368_2030599_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2030665_2031997_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2032249_2032624_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2032726_2033905_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2033915_2034506_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2034616_2035423_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2035448_2036243_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2037243_2038218_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2038376_2038889_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2039045_2040017_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2041761_2042568_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2042564_2043866_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2043816_2044581_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2044694_2045465_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2045549_2046737_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2046809_2047184_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2047284_2048547_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2048543_2049401_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2049573_2050575_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2051026_2051977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2053492_2054692_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2055060_2055297_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2055360_2055528_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2055641_2057447_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2057700_2058651_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2058749_2059700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	2246167	2307515	4107431	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2246167_2247118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2247234_2247954_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2248126_2249113_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2249113_2249596_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2249599_2250883_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2250879_2251818_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2251814_2253524_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2253533_2254781_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2256391_2257681_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2258818_2259577_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2260253_2260997_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2261071_2261812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2262007_2262844_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2262894_2263665_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2263714_2264767_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2264763_2265390_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2265386_2266421_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2266599_2267616_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2267714_2268665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2271405_2272695_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2272813_2273251_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2273294_2274503_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2274649_2275114_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_005015810.1|2275137_2276088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2277072_2277846_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2277842_2278841_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2278925_2279702_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2279857_2281462_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2281842_2282967_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2283093_2283717_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2283713_2285615_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2285663_2286458_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2286470_2287472_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2287468_2287975_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2287967_2288816_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2288913_2289456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2289499_2290450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2290605_2290932_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2290928_2291213_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2291209_2291689_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2291685_2293314_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2293310_2293655_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2293654_2296588_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2297746_2298697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2298795_2299092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2299198_2300116_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2300120_2300834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2300847_2301819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2303538_2303919_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2303922_2305110_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2305533_2306271_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2306564_2307515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	2328306	2399460	4107431	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2328306_2329257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2329809_2331435_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2331484_2332519_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2332521_2333868_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2333864_2335379_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2335369_2336380_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2336853_2337795_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2337803_2338772_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2340311_2341280_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2341457_2342447_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2342493_2343252_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2343441_2344179_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2344277_2345228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2345412_2346195_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2346188_2346890_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2347129_2347732_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2349058_2350009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2350005_2351562_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2351554_2352328_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2352386_2353337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2353418_2354594_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2354607_2356665_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2356661_2357687_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2357698_2358988_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2359010_2360108_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2360104_2360995_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2360991_2363076_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2363107_2364277_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2364318_2365059_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2365058_2365829_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2366153_2366321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2366684_2367470_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2367496_2369581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2369748_2371704_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2372027_2372528_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2372626_2374153_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2374290_2375178_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2375192_2376146_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2376197_2378288_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2378303_2378690_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2381383_2382187_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2383480_2384383_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2384447_2385224_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2385545_2386595_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2386718_2388389_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2388393_2389188_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2389286_2390237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2390256_2391162_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2391239_2391938_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2392097_2393042_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2393051_2394539_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2394538_2395606_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2395669_2397082_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2397267_2398488_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2398509_2399460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	2496337	2555118	4107431	transposase,tRNA	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2496337_2498287_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2498674_2499451_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2499456_2499849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2500270_2501221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2501217_2502315_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2502346_2503297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2505078_2506320_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2506331_2507105_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2507131_2508082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508561_2509218_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509232_2510900_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510902_2511532_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511743_2512838_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2512982_2513795_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2513798_2515502_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2515552_2516683_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516869_2517946_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518027_2518678_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2518692_2520096_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520379_2521198_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2521194_2521899_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522798_2523914_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523947_2524322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524344_2525502_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525514_2525748_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526382_2529352_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529366_2529576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529727_2530357_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2530353_2532444_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2532467_2533148_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533144_2533705_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533711_2534809_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2534961_2535555_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535551_2536844_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536857_2537400_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537409_2538246_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538279_2539341_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539382_2540435_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540450_2540753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540894_2541845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2542023_2543718_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543714_2544800_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544847_2545747_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545757_2546402_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547423_2550666_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550676_2551831_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2552057_2553020_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2553118_2554069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554167_2555118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	2607655	2674155	4107431	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607655_2608606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608975_2609548_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609550_2610561_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610553_2611054_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611064_2611406_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2611417_2612209_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612225_2612495_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612517_2613306_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613352_2614369_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614585_2616028_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616206_2617826_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617946_2619767_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619845_2621378_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2621411_2623058_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623127_2624150_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624167_2625301_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625303_2625993_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2625992_2626778_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626821_2627586_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627624_2629046_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629111_2629816_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629863_2630283_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630295_2630703_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630886_2631597_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631723_2632014_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632031_2632514_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637019_2638174_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_077069114.1|2638479_2639496_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639742_2640531_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640597_2641278_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641274_2642045_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642143_2643094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643149_2644067_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644077_2645256_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645275_2646271_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647859_2648468_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648455_2649496_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649513_2650476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650472_2651666_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651662_2652460_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652485_2653472_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653490_2655530_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2655731_2656412_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656425_2657337_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657333_2657912_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658050_2658956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658963_2662383_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662370_2664971_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665926_2666559_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666952_2667711_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2667707_2668910_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669097_2670048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670955_2672101_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672087_2672843_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672959_2673139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673204_2674155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	2857607	3009255	4107431	transposase,holin,protease,tRNA	uncultured_Mediterranean_phage(15.79%)	118	NA	NA
WP_010929956.1|2857607_2858558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2858656_2859538_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2859615_2860995_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2861033_2861879_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2861894_2862239_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2862241_2862778_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2862950_2863526_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2863628_2864366_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2864433_2866071_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2866178_2866934_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2866921_2867884_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2867985_2868786_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2868847_2870923_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2871087_2873463_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2873543_2874899_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876377_2877100_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877154_2878138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2878267_2879218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879214_2880117_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880204_2880963_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880975_2882067_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882164_2883592_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883821_2885036_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2885081_2887952_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890362_2890851_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890976_2893673_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893827_2896110_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2896283_2896907_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2897005_2897956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2898002_2898557_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898624_2899470_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899539_2900508_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2900507_2901371_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2904203_2908130_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2908865_2912096_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2912377_2913205_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2913238_2913934_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2913926_2915207_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2915216_2916194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2916175_2917876_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2917978_2919082_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2919112_2919868_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2919874_2921395_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921437_2921740_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921736_2922369_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922447_2924313_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2924309_2925104_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2925132_2926248_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927152_2928031_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2928030_2928855_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2929022_2929973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2930071_2931022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931234_2934084_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934065_2934794_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934934_2936398_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936394_2936766_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936783_2938097_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938133_2938592_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2938704_2939655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2939651_2940665_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2940804_2941791_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2942149_2942857_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2943437_2944388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944539_2945142_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945160_2945793_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945837_2946089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946030_2947917_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2947935_2948778_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2948774_2950133_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2950353_2951148_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2951378_2952872_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2953107_2955189_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2955383_2956424_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2956558_2957575_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2957596_2958454_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2958498_2959275_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2959642_2960593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960619_2961084_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962290_2964579_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964695_2965568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965610_2966765_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966799_2967630_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967713_2969258_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969300_2969660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969661_2970075_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970115_2970433_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970517_2971234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971497_2972919_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972985_2975733_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930525.1|2976065_2977082_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977417_2978059_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2978149_2979586_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979743_2980817_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980813_2981950_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2982094_2982439_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2982505_2984386_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2984435_2985371_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2985703_2986720_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987657_2989085_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2989081_2990104_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2990093_2990567_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990707_2991595_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991591_2993235_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2993231_2994281_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2995069_2996086_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996185_2996818_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996826_2997216_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997268_2998321_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999184_3000891_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000964_3001465_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001479_3003537_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003563_3003857_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003958_3004906_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004918_3005794_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005914_3006475_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006509_3006833_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007268_3008006_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008304_3009255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	3030206	3102700	4107431	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3030206_3031157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031199_3032375_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032596_3034387_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3034399_3036061_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036073_3038779_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039071_3040826_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040822_3041449_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041445_3042297_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3042372_3044487_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044673_3045288_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045433_3045685_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045754_3047137_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3047133_3050313_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3051120_3052038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3052089_3052821_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052880_3053453_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054961_3055978_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056115_3057165_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057269_3058220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3058315_3059041_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3059251_3059632_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3059937_3060810_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3060817_3061198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3061351_3062626_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3064113_3065022_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3065819_3066884_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3068720_3069722_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3069944_3070586_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3070668_3072495_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3072738_3073668_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3073667_3074417_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3074488_3075403_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3075422_3076568_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3076628_3077540_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3077620_3078571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078669_3079254_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079288_3080278_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080274_3081216_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081212_3082433_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082475_3082790_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082981_3083341_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083342_3085058_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085245_3085917_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085931_3087260_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087256_3088156_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088242_3089328_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3089320_3090454_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3090453_3093135_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093505_3094087_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094212_3094938_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094934_3095612_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095827_3097009_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097781_3097964_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3097993_3098944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099073_3099466_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099742_3100654_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100778_3101753_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101749_3102700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	3116207	3169725	4107431	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3116207_3117158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117270_3117522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118027_3119146_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119265_3119478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119637_3119859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119911_3120862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122038_3123409_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123441_3124233_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124245_3125301_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125326_3126202_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126307_3126556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126590_3128045_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128041_3128563_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128591_3129944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130167_3133056_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135200_3136502_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136516_3137233_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137514_3138195_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138206_3138374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138482_3138629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3138722_3139382_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139780_3141613_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141609_3142560_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143723_3145439_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145449_3145941_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3146013_3147030_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147197_3147977_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147995_3148523_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148816_3149086_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3149176_3151336_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151456_3152176_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3152172_3153123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3153263_3154481_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3154474_3155086_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3155719_3156697_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3156840_3157587_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3157608_3158055_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3158842_3161074_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3161096_3161897_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3162178_3163411_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3163521_3164511_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3164541_3165930_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3167528_3168512_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3168708_3169725_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	3192748	3241770	4107431	transposase,holin	Vibrio_phage(25.0%)	43	NA	NA
WP_005013747.1|3192748_3193699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3193781_3195740_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3195767_3196469_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3196615_3197431_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3197427_3198243_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3198259_3199063_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3199046_3199481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3199477_3199912_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3199913_3200468_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3200485_3201436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3201534_3202485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3202797_3203955_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3204143_3204503_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3204539_3205016_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3205090_3205714_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3205716_3206973_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3207018_3207513_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3207509_3208877_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3208892_3211220_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3211219_3212293_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3212314_3212803_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3212820_3213468_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3213464_3213773_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3213790_3215803_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3215799_3217302_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_019248505.1|3217312_3218797_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3218813_3219143_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_010930039.1|3219443_3221675_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3221886_3224157_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3224269_3224788_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3224797_3225574_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3225570_3227361_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3227420_3228401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3228538_3229456_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3229584_3230445_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3230480_3233936_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3233965_3234649_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3234645_3235134_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_041337087.1|3235232_3236183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3236179_3237199_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3237208_3239917_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3240064_3240721_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3240819_3241770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	3293363	3336270	4107431	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3293363_3294314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3294415_3294844_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3294916_3297112_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3297333_3298284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3298243_3298768_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3298899_3299871_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3299990_3302435_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3302450_3303041_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3303284_3304235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3304392_3305658_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3305691_3306789_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3307443_3308394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3308394_3308964_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3309031_3309847_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3310013_3311633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3311711_3312653_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3312652_3313537_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3313540_3315193_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3315232_3316630_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3316671_3318051_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3318090_3318309_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3318649_3319522_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3319681_3320632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3321363_3321741_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3321725_3322427_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3322570_3323263_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3323262_3324366_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3324475_3326848_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3326844_3328404_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3328428_3329226_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3329257_3330403_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3330507_3331950_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3331952_3333182_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3335319_3336270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	3345562	3378245	4107431	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3345562_3347293_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3347358_3347931_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3347911_3348598_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3348953_3349625_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3349953_3350175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3350174_3350456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3350452_3350968_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3350967_3351519_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3351497_3351740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3351744_3352557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3352556_3352820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3352860_3353058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3353038_3353455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3353459_3357416_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3357408_3357798_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3357794_3358328_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3358395_3358755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3358764_3361377_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3361402_3361693_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3361710_3362040_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3362049_3362568_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3362822_3363323_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3363330_3363753_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3363749_3364148_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3364144_3364540_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3364539_3364740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3364741_3365224_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3365286_3365538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3366212_3367163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3367591_3368194_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3368316_3368559_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3368564_3369620_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3369648_3371067_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3371069_3372347_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3372333_3372819_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3373458_3374409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3374665_3375355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3375347_3375599_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3376153_3376765_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3376836_3377043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3377294_3378245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	3389464	3435783	4107431	transposase,protease,tRNA	Bacillus_phage(40.0%)	44	NA	NA
WP_010930800.1|3389464_3390415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390491_3392312_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392316_3393390_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393512_3394481_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394554_3395466_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395484_3396057_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396137_3396686_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396685_3398275_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398344_3398584_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3398624_3399650_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399715_3400897_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3400993_3401446_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401455_3402796_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3403112_3404150_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404531_3404891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404974_3405916_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3405990_3406941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407234_3408329_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3408410_3409292_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409313_3410153_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410228_3411746_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3411842_3412943_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3412959_3413382_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3413404_3413617_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3413663_3414584_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3414766_3415516_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3415518_3415848_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3416054_3417488_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3417499_3417883_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3417944_3418745_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3418843_3419794_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|3419849_3420662_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|3420820_3421669_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|3421869_3426264_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|3426357_3427335_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|3427721_3428300_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|3428447_3429497_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|3429537_3430272_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|3431066_3431648_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814158.1|3431644_3432538_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|3432671_3433073_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|3433090_3433693_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3433750_3434134_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3434832_3435783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013878	Bordetella pertussis strain H361 chromosome, complete genome	4107431	4029602	4083034	4107431	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4029602_4030553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030722_4031949_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032148_4033015_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033007_4033970_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034070_4035021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035119_4036070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036168_4037119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037115_4038609_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038605_4041713_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041709_4044778_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044774_4046025_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046205_4046967_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046999_4047650_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047652_4048492_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048732_4049476_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049558_4049906_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050003_4050846_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050890_4051778_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051804_4051993_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052090_4053548_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053534_4055061_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055079_4055547_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055546_4056569_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056689_4057409_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057484_4058585_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058586_4059777_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059896_4060913_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061231_4061903_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061899_4062808_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063019_4063667_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067518_4068595_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068605_4069415_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069504_4070278_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010929577.1|4070460_4071411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071299_4072322_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072311_4073466_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073505_4074918_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075042_4075909_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075910_4076735_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076731_4077493_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077573_4078260_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078433_4079441_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079437_4080217_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080274_4081537_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082083_4083034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
