The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	27282	70036	4105291	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	77634	136108	4105291	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033446324.1|127021_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	164894	225405	4105291	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	233337	286925	4105291	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|253618_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	390858	448367	4105291	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_023853020.1|416467_417469_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_042962164.1|417403_417799_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	589372	650564	4105291	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589372_590323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590798_591689_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591685_592507_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592707_593199_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593217_594291_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594337_595441_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595516_596137_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596157_596667_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596721_596973_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597036_598170_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598177_598564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598560_601080_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601508_601847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601843_602350_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602411_603212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603322_604264_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604357_605893_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607572_609423_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609426_610260_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610259_611201_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611452_612424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612565_614854_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615160_616069_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616123_617089_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617163_618825_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618896_619607_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619755_620706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621404_621788_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621845_622448_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622465_622867_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622982_623894_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623890_624472_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_033446151.1|625275_626001_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626041_627091_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627238_627817_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628203_629181_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629274_633669_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633869_634718_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634876_635689_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635744_636695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636793_637594_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637655_638039_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638050_639403_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639690_640020_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640022_640772_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640954_641875_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641921_642134_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642156_642579_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642595_643696_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643792_645310_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645385_646225_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646246_647119_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647209_648304_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648597_649548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649622_650564_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	655888	702079	4105291	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655888_656914_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656954_657194_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657263_658853_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658852_659401_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659481_660054_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660072_660984_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661057_662026_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662148_663222_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663226_665047_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665123_666074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666162_666498_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666631_667282_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667303_668722_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668791_669547_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669515_670274_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670284_671166_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671182_671890_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671892_672651_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672860_674603_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674595_675120_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675159_675954_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676121_677195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677293_678244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678495_678702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678773_679385_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679939_680191_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680183_680873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681129_682080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682719_683205_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683191_684469_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684471_685890_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685918_686974_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686979_687222_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687344_687947_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688375_689326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690000_690252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690314_690797_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690798_690999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690998_691394_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691390_691789_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691785_692208_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692215_692716_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692970_693489_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693498_693828_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693845_694136_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694161_696774_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696783_697143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697210_697744_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697740_698130_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698122_702079_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	708245	762175	4105291	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708245_709976_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710028_710457_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710459_711140_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711139_711598_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711634_712609_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712625_713942_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713973_714471_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714557_715247_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715246_716296_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716292_717087_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717255_717606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717581_718139_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719268_720219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722356_723586_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723588_725031_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725135_726281_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726312_727110_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727134_728694_-	chaperone SurA	NA	NA	NA	NA	NA
WP_033446130.1|728690_731057_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_023852735.1|731235_732276_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732275_732968_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733111_733813_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733797_734175_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734906_735857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736016_736889_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737229_737448_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737487_738867_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738908_740306_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740345_741998_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742001_742886_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742885_743827_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743905_745525_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745691_746507_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746574_747144_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747144_748095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748749_749847_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749880_751146_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751303_752254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752497_753088_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753103_755548_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755667_756639_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756770_757295_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757254_758205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758426_760622_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760694_761123_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761224_762175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	884764	952740	4105291	transposase	Bacillus_phage(33.33%)	58	NA	NA
WP_023994644.1|884764_885781_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885977_886961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888559_889948_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889978_890968_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891078_892311_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892592_893393_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893415_895647_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896434_896881_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896902_897649_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897792_898770_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899403_900015_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900008_901226_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901366_902317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902313_903033_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903153_905313_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905403_905673_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905761_905968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905966_906494_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906512_907292_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907459_908476_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908548_909040_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909050_910766_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911929_912880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912876_914709_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915107_915767_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915860_916007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916115_916283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916294_916975_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917256_917973_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917987_919289_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921433_924322_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924545_925898_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925926_926448_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926444_927899_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927933_928182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928287_929163_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929188_930244_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930256_931048_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931080_932451_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933627_934578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934630_934852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935011_935224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935343_936462_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936558_936774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936967_937219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937331_938282_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938278_938662_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938716_940531_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940680_941508_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941553_942534_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942530_942743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942739_943921_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944084_944819_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944820_947433_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947568_949482_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950097_950508_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950605_951691_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951789_952740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	996269	1068786	4105291	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996269_997220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997324_998374_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998511_999528_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001036_1001609_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001668_1002400_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002451_1003369_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004176_1007356_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007352_1008735_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008804_1009056_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009201_1009816_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010002_1012063_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012192_1013044_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013040_1013667_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013663_1015418_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015710_1018416_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018428_1020090_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020102_1021893_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022114_1023290_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023332_1024283_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024381_1025122_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025316_1027353_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027370_1028381_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028498_1029692_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029721_1030495_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030491_1031682_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031707_1032646_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032642_1034991_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035145_1035787_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037116_1037269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037300_1037849_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037867_1038353_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038530_1039469_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039471_1039789_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039834_1040779_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042459_1043110_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043163_1043499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043495_1044356_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044372_1044654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044727_1044991_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045234_1046185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046483_1047221_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047656_1047980_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048014_1048575_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048695_1049571_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049583_1050531_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050632_1050926_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050952_1053010_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053024_1053525_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053598_1055305_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056168_1057221_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057273_1057663_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057671_1058304_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058403_1059420_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060250_1061258_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061254_1062898_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062894_1063782_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063922_1064396_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064385_1065408_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065404_1066832_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067769_1068786_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1072539	1134616	4105291	holin,transposase,tRNA	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1072539_1073676_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073672_1074746_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074903_1076340_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076430_1077072_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077408_1078425_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|1080467_1081418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082620_1084042_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084305_1085022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085106_1085424_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085464_1085878_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085879_1086239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086281_1087826_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087909_1088740_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088774_1089929_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089971_1090844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090960_1093249_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094455_1094920_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094946_1095897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095914_1096052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096264_1097041_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097085_1097943_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097964_1098981_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099115_1100156_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100350_1102432_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102667_1104161_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104391_1105186_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105406_1106765_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106761_1107604_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107622_1109509_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109450_1109702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109746_1110379_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110397_1111000_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111151_1112102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112682_1113390_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113748_1114735_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114874_1115888_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115884_1116835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116947_1117406_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117442_1118756_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118773_1119145_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119141_1120605_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120745_1121474_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121455_1124305_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124517_1125468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125635_1126460_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126459_1127338_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128242_1129358_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129386_1130181_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130177_1132043_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132121_1132754_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132750_1133053_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133095_1134616_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1152186	1218705	4105291	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152186_1153983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153982_1154951_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155020_1155866_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155933_1156488_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156534_1157485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157583_1158216_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158380_1160663_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160817_1163514_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163639_1164128_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166538_1169409_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169454_1170669_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170898_1172326_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172423_1173515_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173527_1174286_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174373_1175276_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175272_1176223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176352_1177336_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177390_1178113_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179591_1180947_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181027_1183403_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183567_1185643_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185704_1186499_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186606_1187569_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187556_1188312_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188419_1190057_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190124_1190862_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190964_1191540_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191712_1192249_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192281_1192596_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192611_1193457_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193495_1194875_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194952_1195834_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195932_1196883_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196879_1197290_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197397_1198252_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198244_1199207_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199252_1200377_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200482_1201361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201485_1202265_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202418_1203840_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204274_1205972_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206198_1207140_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207466_1208213_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208220_1209147_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209268_1210186_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210225_1211179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211203_1211782_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213455_1214064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214141_1214495_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214578_1215568_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215770_1216721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216807_1217758_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217754_1218705_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1269633	1326844	4105291	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1269633_1270584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274330_1274942_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275164_1276625_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276721_1278314_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278667_1278925_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278926_1280267_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280362_1281052_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281064_1282495_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284219_1285041_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285051_1286623_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286651_1287629_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287655_1288459_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288455_1289250_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289257_1290493_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290506_1290920_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291669_1292620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293241_1294969_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295080_1296439_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296731_1297682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297722_1298793_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298815_1299694_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299865_1300837_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300999_1301842_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302003_1302684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302677_1303847_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303843_1304875_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304942_1306160_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306194_1307727_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307807_1308431_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308461_1309073_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309108_1309579_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310010_1311015_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311051_1312566_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312569_1313529_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313557_1314361_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314362_1315997_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316080_1317142_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317340_1317610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317613_1318138_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318553_1319504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319500_1320535_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320643_1321282_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321576_1321804_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321926_1322640_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322884_1323835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323974_1324220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324334_1325783_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325893_1326844_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1417077	1469230	4105291	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1417077_1418028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418194_1418548_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418560_1418923_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418964_1419390_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419592_1420849_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421047_1422028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422177_1423419_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423517_1424468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424476_1425172_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427993_1428593_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428603_1430769_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430792_1432577_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432576_1432666_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433360_1433633_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433632_1435699_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435695_1436646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436744_1437695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437810_1438143_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438139_1438826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438812_1439772_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439804_1442174_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442173_1442806_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442907_1444248_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444294_1445650_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445940_1446177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446364_1446682_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446954_1447470_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447563_1447725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447740_1448496_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448834_1449041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449048_1449708_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450002_1452207_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452317_1453541_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453663_1454638_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454705_1455899_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455913_1456714_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456710_1458567_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458563_1459169_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459187_1460573_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461298_1462525_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462613_1463396_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463494_1464445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464471_1465245_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465256_1466498_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468279_1469230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1513155	1581241	4105291	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1513155_1513644_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513761_1514340_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514445_1514814_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514912_1515863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515869_1516982_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517668_1518871_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518906_1519053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519074_1521735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521747_1525152_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525819_1528045_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528091_1528418_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528468_1529077_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529175_1530126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530195_1530960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1530956_1531493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531659_1532511_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532570_1533197_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533193_1534144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534242_1535355_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535344_1536346_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536451_1537963_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537959_1539264_-	imelysin	NA	NA	NA	NA	NA
WP_033446227.1|1539375_1539933_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930432.1|1540203_1540758_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541213_1541429_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541683_1544281_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544277_1545465_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1546123_1546738_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1546826_1547948_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547965_1548871_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549763_1550714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550895_1551648_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551716_1552376_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552372_1553101_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553113_1555393_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555417_1555621_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555662_1556295_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556430_1557348_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557344_1558058_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558295_1559066_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559070_1559670_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559914_1561405_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561463_1561748_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1561885_1562041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562313_1563240_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563376_1564117_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564283_1565660_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565841_1566747_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568398_1570201_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1570327_1570969_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571067_1572018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572039_1573260_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573445_1574858_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574921_1575989_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575988_1577476_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577485_1578430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578589_1579288_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579365_1580271_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580290_1581241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1617190	1672781	4105291	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617190_1618141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618199_1618973_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618965_1620522_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620518_1621469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622795_1623398_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623637_1624339_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624332_1625115_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625299_1626250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626348_1627086_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627275_1628034_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628080_1629070_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629247_1630216_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631755_1632724_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632732_1633674_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634147_1635158_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635148_1636663_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636659_1638006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1638008_1639043_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639092_1640718_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641270_1642221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642325_1643273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643326_1645141_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645133_1645808_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645937_1649012_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649025_1649325_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649639_1650263_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1650506_1651376_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651353_1652298_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652383_1653310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653422_1654202_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654192_1655389_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655419_1656370_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656591_1657281_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657345_1658101_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658152_1659145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659154_1660108_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660223_1661186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662587_1663016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663012_1663963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1664256_1664979_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665417_1666605_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1666608_1666959_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668708_1669680_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669693_1670407_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670411_1671329_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671435_1671732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671830_1672781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1830548	1889818	4105291	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830548_1831499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831623_1832433_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1832633_1833584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834857_1836075_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837131_1838034_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838110_1838983_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839113_1839482_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839539_1840586_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840781_1842038_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842042_1843380_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843529_1844486_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844588_1845521_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845636_1845957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446181.1|1845943_1846309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846356_1847931_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847983_1848928_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848945_1849776_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849768_1851403_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851399_1852755_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853661_1855239_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855242_1856517_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856614_1856989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858704_1859838_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859875_1860481_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860477_1861296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861367_1863992_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863978_1864233_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864299_1864881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865184_1865445_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865610_1866234_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866233_1867007_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1867003_1868212_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868237_1868711_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868784_1869735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869833_1870784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870882_1872232_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872997_1873753_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873845_1876728_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877050_1877476_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877503_1878652_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878648_1879155_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1879170_1880457_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1880506_1881802_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881803_1882442_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1882447_1883605_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883631_1884987_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884990_1886061_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886199_1886436_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886523_1887630_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887595_1888900_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888918_1889818_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1900058	1944381	4105291	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1900058_1901009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901107_1902058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902257_1903343_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903358_1904120_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1904116_1905040_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_010930780.1|1905138_1905639_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905671_1906415_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906510_1906750_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906763_1906916_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1907001_1908492_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908583_1909522_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909518_1909695_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909697_1910360_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911981_1912125_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912121_1913096_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1913262_1914213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914209_1915484_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915587_1916781_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916777_1917431_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917427_1918864_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918851_1919211_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920025_1920166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920183_1921134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922179_1924045_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924302_1925823_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925910_1926561_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927509_1928805_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928826_1929711_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929809_1930685_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930674_1931031_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931161_1932136_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932265_1932445_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932542_1933067_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933077_1933914_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934026_1934398_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934394_1934946_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934961_1936653_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936701_1937382_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937629_1938094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938263_1939193_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939205_1939853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939926_1941744_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941827_1942778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943430_1944381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	1974154	2038523	4105291	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974154_1975105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975326_1976277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976375_1977341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977478_1978378_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980972_1982460_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982470_1983667_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983739_1985059_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985055_1985931_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985961_1987110_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987127_1987442_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987463_1988186_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988185_1989004_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989008_1989536_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989541_1990798_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991156_1992296_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992373_1993246_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994116_1995067_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995026_1995662_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996021_1997344_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997662_1998484_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999908_2000481_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000520_2002350_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002312_2003371_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003408_2003870_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003954_2004701_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006191_2009422_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009488_2010820_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011072_2011447_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011549_2012728_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012738_2013329_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013439_2014246_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014271_2015066_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016066_2017041_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017199_2017712_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017868_2018840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853104.1|2020584_2021379_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2021387_2022689_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022639_2023404_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023517_2024288_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024372_2025560_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025632_2026007_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026107_2027370_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027366_2028224_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028396_2029398_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029849_2030800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032363_2033515_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033883_2034120_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034183_2034351_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034464_2036360_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036523_2037474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037572_2038523_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	2170061	2219714	4105291	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170061_2171012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171110_2173105_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173164_2174130_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174119_2176981_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176983_2177490_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177594_2178803_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178804_2179743_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179904_2180378_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180374_2181325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181435_2181876_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2182004_2183234_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183272_2184094_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184147_2185299_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852690.1|2185390_2185861_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188429_2190979_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191049_2193623_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193888_2194089_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194120_2194282_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194339_2194678_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194826_2195777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196551_2197220_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197201_2199157_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199399_2200149_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200161_2201025_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201028_2202444_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202577_2203306_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203444_2203645_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203820_2204219_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204242_2205643_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205761_2206514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206802_2207480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207506_2208286_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208282_2209167_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209184_2209964_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209948_2210707_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2210844_2211480_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211747_2212764_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212861_2213902_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214036_2215329_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216688_2217072_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217089_2217677_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217714_2218665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218763_2219714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	2475966	2534210	4105291	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2475966_2476917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477396_2478053_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478067_2479735_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479737_2480367_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480578_2481673_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481817_2482630_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2482633_2484217_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2484387_2485518_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485704_2486781_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486862_2487513_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487527_2488931_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489214_2490033_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490029_2490734_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491633_2492749_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492782_2493157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493179_2494337_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494349_2494583_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495217_2498187_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498201_2498411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498562_2499192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2499188_2501246_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501302_2501983_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2501979_2502540_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502546_2503644_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503796_2504390_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504386_2505679_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505692_2506235_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506244_2507081_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507114_2508176_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508217_2509270_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509285_2509588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509729_2510680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510697_2510862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510858_2512553_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512549_2513635_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513682_2514582_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514592_2515237_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516258_2519501_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519511_2520666_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520892_2521855_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521953_2522904_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523002_2523953_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2523962_2524652_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524711_2525149_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525194_2526088_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526135_2527308_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527304_2528459_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2528655_2529006_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2528995_2529430_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529446_2530397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530544_2531012_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2530992_2532150_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532215_2533142_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533259_2534210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	2576488	2642988	4105291	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576488_2577439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577808_2578381_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578383_2579394_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579386_2579887_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579897_2580239_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580307_2581042_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581058_2581328_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581350_2582139_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582185_2583202_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583418_2584861_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585039_2586659_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586779_2588600_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588678_2590211_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590244_2591891_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2591960_2592983_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593000_2594134_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594136_2594826_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594825_2595611_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595654_2596419_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596457_2597879_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597944_2598649_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598696_2599116_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599128_2599536_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599719_2600430_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600556_2600847_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600864_2601347_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605852_2607007_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607312_2608329_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608575_2609364_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609430_2610111_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610107_2610878_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2610976_2611927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2611982_2612900_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612910_2614089_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614108_2615104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616692_2617301_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617288_2618329_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618346_2619309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619305_2620499_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620495_2621293_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621318_2622305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622323_2624363_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624564_2625245_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625258_2626170_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626166_2626745_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626883_2627789_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627796_2631216_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631203_2633804_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634759_2635392_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635785_2636544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636540_2637743_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637930_2638881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639788_2640934_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640920_2641676_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641792_2641972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642037_2642988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	2671103	2708515	4105291	transposase	Planktothrix_phage(33.33%)	37	NA	NA
WP_005012067.1|2671103_2672054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672152_2673103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673195_2673735_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673841_2674186_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674243_2675692_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675879_2676215_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677842_2679021_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679103_2679604_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679713_2680415_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2680426_2680891_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930294.1|2681982_2682810_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682935_2683406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683532_2684426_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684473_2685655_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685667_2686483_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2686616_2687144_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687140_2687638_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687785_2688163_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688384_2689335_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689433_2690045_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690279_2691407_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691517_2692606_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692658_2693510_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693529_2694411_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694587_2695901_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696111_2696945_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696941_2697523_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697876_2698827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698842_2699958_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700060_2700987_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2700986_2702225_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702221_2702989_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2702989_2703691_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703772_2704219_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2705108_2705747_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706515_2707466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707564_2708515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	2807642	2862159	4105291	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807642_2808593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808921_2809527_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809580_2810894_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2810968_2811439_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811438_2812227_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812237_2813890_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2813977_2814928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816089_2816596_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816592_2817357_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817372_2817657_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817721_2818711_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818882_2819812_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819783_2820470_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820503_2821049_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821093_2822359_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822355_2823258_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824439_2825384_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825478_2826996_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827037_2828666_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828773_2829655_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832767_2833142_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833166_2833505_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833548_2835183_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835221_2836568_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836675_2838097_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838166_2838751_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838853_2839804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839938_2841045_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841055_2842153_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842297_2843503_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843509_2844031_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844027_2844510_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844515_2844767_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844747_2845233_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845368_2848830_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848847_2849732_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849741_2850173_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850419_2850923_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851000_2852401_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852475_2853351_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853347_2854355_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854822_2855128_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855218_2855809_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855999_2857016_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857207_2859544_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859626_2860061_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860159_2861110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861208_2862159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	2870184	2926969	4105291	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2870184_2871135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872841_2873108_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873815_2874154_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878706_2879309_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879405_2880695_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880752_2881484_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881480_2882284_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882280_2883369_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883365_2884295_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884443_2885589_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885610_2886561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886891_2890713_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890869_2891538_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891542_2893216_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893234_2894554_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894558_2896874_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896929_2899098_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899094_2904275_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904373_2904688_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904915_2905161_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905255_2905774_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905873_2907079_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907194_2908592_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908708_2909287_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909359_2910751_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910918_2911869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912149_2912770_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912766_2913180_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913176_2914220_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914275_2914464_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914473_2915238_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915328_2915985_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916076_2916835_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916860_2918462_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918662_2919667_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919767_2920031_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_023853341.1|2920148_2920916_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921515_2922466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|2924849_2925947_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926018_2926969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	2957355	3001046	4105291	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2957355_2958306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958426_2959323_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961600_2963826_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2963990_2965079_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965035_2965689_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965736_2966534_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967065_2968016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968096_2969245_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969301_2970252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970350_2970656_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970684_2971119_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971120_2972365_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972361_2973072_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973086_2973998_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974360_2974765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974761_2975220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975226_2976135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976131_2976998_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2976984_2977812_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977822_2978950_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980027_2981266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981307_2982570_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982576_2983329_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983380_2983566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983841_2984306_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_023996698.1|2984385_2984997_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985141_2987250_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987246_2988197_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988300_2988921_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989024_2989765_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990899_2992024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992069_2992438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992679_2993630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994665_2995208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995405_2995576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995593_2996544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996540_2997449_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997575_2998412_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998924_3000034_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000095_3001046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	3380991	3434732	4105291	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3380991_3381942_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382346_3382991_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383015_3383600_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383700_3384318_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384320_3386036_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386032_3386341_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386357_3386975_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387019_3387322_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387422_3388277_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388464_3388689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388858_3389131_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389548_3389956_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390325_3391120_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391220_3392456_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392524_3393541_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393552_3394929_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394925_3396122_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396118_3397657_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397653_3398913_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400853_3401804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402570_3403665_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403657_3404992_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404945_3405629_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405654_3406818_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406814_3407816_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407815_3408688_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408684_3409434_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409430_3410222_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410218_3411358_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411633_3412419_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412452_3413235_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413238_3413628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414767_3415631_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415666_3416755_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416751_3417702_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418055_3421034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421960_3422839_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424787_3425738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425734_3426202_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426244_3427015_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427035_3427836_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427846_3429256_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429350_3430136_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430375_3431392_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431499_3431892_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432029_3432710_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432714_3433686_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433781_3434732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	3440887	3500185	4105291	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440887_3442651_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442762_3443641_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443753_3444569_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444572_3444824_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444908_3445925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446255_3446477_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931364.1|3448837_3449704_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450252_3451461_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451540_3453112_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453229_3454165_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454353_3455298_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455865_3461583_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461588_3462716_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462771_3463398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463669_3464686_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464781_3465492_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465488_3466478_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466573_3468205_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468207_3468945_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469100_3469973_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470322_3471462_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471458_3472118_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472189_3472822_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472851_3473370_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473380_3474490_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474536_3475391_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475392_3476295_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477517_3478468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480222_3481212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481208_3481367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481387_3482176_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482172_3483204_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483222_3483786_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483841_3485362_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485625_3486330_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486337_3487066_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487180_3487555_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487597_3488887_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488883_3490053_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490049_3490889_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490948_3491884_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491896_3492847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492945_3493908_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493939_3494299_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494423_3495326_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495327_3497100_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497134_3497911_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499234_3500185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013880	Bordetella pertussis strain H540 chromosome, complete genome	4105291	3515123	3573196	4105291	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515123_3516074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516202_3517336_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517379_3518285_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518287_3519988_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519984_3520905_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520912_3521890_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852626.1|3521948_3522908_-	succinylglutamate desuccinylase/aspartoacylase	NA	NA	NA	NA	NA
WP_003815317.1|3524957_3525194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525320_3526184_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526272_3527094_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527173_3527911_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527907_3528900_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529052_3529676_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529720_3530869_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533192_3534143_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534483_3535434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535532_3536483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536779_3537277_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537319_3539095_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539102_3539969_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931405.1|3539975_3540701_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023852623.1|3541879_3542650_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542963_3543554_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543587_3544916_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544990_3546136_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546247_3547246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547208_3547643_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549159_3550044_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550040_3551246_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551242_3552103_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552215_3554006_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|3554046_3554697_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|3554712_3555021_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555186_3556473_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557906_3558857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560808_3562023_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562128_3563118_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563114_3563723_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563735_3564365_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564361_3564982_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565013_3565805_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566656_3567112_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567130_3568057_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568110_3569397_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570327_3571200_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571196_3572147_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572245_3573196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
