The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	27282	70036	4113750	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	77634	136108	4113750	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033446324.1|127021_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	164894	225404	4113750	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	50	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	233336	286926	4113750	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|253617_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|265573_266911_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279657_280269_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280427_281276_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281301_282684_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284842_285979_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285975_286926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	555310	614610	4113750	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568429_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574128_574287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577029_577980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582127_582646_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582675_583308_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584035_585175_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586552_587290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587292_588924_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589019_590009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590005_590716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590811_591828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592099_592726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592781_593909_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593914_599632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931364.1|605793_606660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609020_609242_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609572_610589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610673_610925_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612846_614610_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	673554	750862	4113750	transposase,protease,integrase,tRNA	Bacillus_phage(20.0%)	57	720691:720709	740579:740597
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674603_676079_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677666_678554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678556_679498_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679543_681109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682886_684212_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684394_685852_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685815_686313_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686343_687315_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687367_687799_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687928_688597_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689325_690429_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690534_691809_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691820_692846_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692847_694218_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694218_695355_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695401_697327_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697323_698445_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698441_699596_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699592_700723_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700730_702296_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702302_703685_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703963_704575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704666_706082_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706099_706810_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706806_708129_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_023853096.1|708274_710170_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710295_711609_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711717_713016_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713198_714107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714116_714326_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714337_716017_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716118_717072_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717162_717990_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717988_719875_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719871_720471_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720519_721419_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721627_722578_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722700_723315_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729288_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736221_736422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746898_748470_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749911_750862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	996797	1062816	4113750	transposase,tRNA	Bacillus_virus(22.22%)	60	NA	NA
WP_003813026.1|996797_997913_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998013_998832_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998929_999541_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999700_1001077_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001139_1001598_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001682_1002378_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002439_1002721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003283_1004036_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004080_1005157_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931176.1|1030575_1031949_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031987_1032689_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032987_1033977_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034077_1034539_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034554_1035103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035244_1036720_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036825_1037917_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037920_1038703_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038712_1039501_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040626_1041061_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041057_1042068_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042111_1043038_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043324_1043693_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043909_1044860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044904_1047331_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047379_1048072_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048144_1049344_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049361_1050267_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050382_1051312_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051337_1052684_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052696_1053461_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053474_1054257_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054449_1055400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055461_1056571_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057083_1057920_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058046_1058955_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058951_1059902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060287_1060830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061865_1062816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1067298	1099189	4113750	transposase	Bacillus_virus(50.0%)	27	NA	NA
WP_023852714.1|1067298_1068249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068245_1070354_-	AsmA family protein	NA	NA	NA	NA	NA
WP_023996698.1|1070498_1071110_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071189_1071654_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071929_1072115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072166_1072919_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072925_1074188_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074229_1075468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076545_1077673_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077683_1078511_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078497_1079364_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080730_1081135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081226_1082177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082546_1083458_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083472_1084183_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084179_1085424_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085425_1085860_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085888_1086194_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086292_1087243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087299_1088448_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088528_1089479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090010_1090808_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090855_1091509_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091465_1092554_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092718_1094944_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097221_1098118_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098238_1099189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1129575	1200545	4113750	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129575_1130526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|1130597_1131695_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134078_1135029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853341.1|1135627_1136395_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136512_1136776_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136876_1137881_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138081_1139683_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139708_1140467_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140558_1141215_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141305_1142070_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142079_1142268_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142323_1143367_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143363_1143777_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143773_1144394_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144674_1145625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145792_1147184_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147256_1147835_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147951_1149349_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149464_1150670_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150769_1151288_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151382_1151628_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151855_1152170_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152268_1157449_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157445_1159614_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159669_1161985_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161989_1163309_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163327_1165001_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165005_1165674_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165830_1169652_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169982_1170933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170954_1172100_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172248_1173178_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173174_1174263_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174259_1175063_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175059_1175791_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175848_1177138_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177234_1177837_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182390_1182729_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183436_1183703_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185409_1186360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186356_1187688_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188948_1190949_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190941_1191583_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191579_1191987_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191983_1192784_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192858_1193563_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193594_1194389_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194385_1195336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195434_1196385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196483_1196918_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197000_1199337_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199528_1200545_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1247939	1328814	4113750	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247939_1248890_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248886_1249837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250097_1251126_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251205_1252504_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_023853219.1|1252500_1253037_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253394_1257441_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1257681_1265343_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265339_1266290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267429_1267903_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268042_1268663_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_162832304.1|1268807_1269599_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269653_1270745_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270766_1271210_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271238_1271871_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271981_1272398_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272390_1273083_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273189_1273564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273640_1274450_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274545_1275490_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275528_1276500_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276590_1277028_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931055.1|1277086_1277890_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278971_1279832_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279864_1281247_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281243_1282263_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282635_1283130_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283137_1283878_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283958_1285563_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285602_1286391_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286516_1288682_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289562_1290375_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290387_1290696_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290813_1292544_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292545_1293691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293820_1294489_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294610_1295078_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295213_1296596_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296592_1297717_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297713_1300350_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300765_1301716_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305462_1306074_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306296_1307757_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307853_1309446_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309799_1310057_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310058_1311399_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311494_1312184_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312196_1313627_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315351_1316173_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316183_1317755_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317783_1318761_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318787_1319591_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319587_1320382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320389_1321625_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321638_1322052_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322801_1323752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324373_1326101_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326212_1327571_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327863_1328814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1448209	1501389	4113750	transposase,tRNA	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1448209_1449160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449326_1449680_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449692_1450055_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450096_1450522_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_057110980.1|1450724_1451981_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452179_1453160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453309_1454551_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454649_1455600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455608_1456304_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459125_1459725_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459735_1461901_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461924_1463709_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463708_1463798_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464492_1464765_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464764_1466831_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466827_1467778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1467893_1468226_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1468222_1468909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1468895_1469855_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1469887_1472257_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1472256_1472889_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1472990_1474331_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1474377_1475733_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1476023_1476260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1476447_1476765_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1477037_1477553_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1477646_1477808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1477823_1478579_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1478917_1479124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1479131_1479791_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1480085_1482290_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1482400_1483624_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1483746_1484721_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1484788_1485982_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1485996_1486797_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1486793_1488650_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1488646_1489252_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1489270_1490656_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1491381_1492608_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1492696_1493479_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1493577_1494528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1494554_1495328_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1495339_1496581_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1498362_1499313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1499344_1500442_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1500438_1501389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1603249	1674403	4113750	transposase	Ectocarpus_siliculosus_virus(10.0%)	55	NA	NA
WP_005012808.1|1603249_1604200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604221_1605442_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605627_1607040_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607103_1608171_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608170_1609658_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609667_1610612_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610771_1611470_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611547_1612453_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612472_1613423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248220.1|1613521_1614316_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_010930454.1|1614320_1615991_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_010930455.1|1616114_1617164_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811187.1|1617485_1618262_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930456.1|1618326_1619229_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930457.1|1620522_1621326_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930458.1|1624019_1624406_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_033446218.1|1624421_1626512_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_003811203.1|1626563_1627517_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_010930460.1|1627531_1628419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930461.1|1628556_1630083_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003811209.1|1630181_1630682_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_019247170.1|1631005_1632961_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930464.1|1633128_1635213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|1635239_1636025_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_019247171.1|1636388_1636556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930466.1|1636880_1637651_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486073.1|1637650_1638391_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930468.1|1638432_1639602_+	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930469.1|1639633_1641718_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003811224.1|1641714_1642605_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930470.1|1642601_1643699_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_010930471.1|1643721_1645011_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|1645022_1646048_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930473.1|1646044_1648102_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_023852812.1|1648115_1649291_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1649372_1650323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650381_1651155_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651147_1652704_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652700_1653651_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654977_1655580_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655819_1656521_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656514_1657297_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657481_1658432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658530_1659268_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659457_1660216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660262_1661252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661429_1662398_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663937_1664906_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664914_1665856_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666329_1667340_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667330_1668845_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668841_1670188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670190_1671225_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671274_1672900_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673452_1674403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1695194	1756542	4113750	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
WP_005013747.1|1695194_1696145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696438_1697161_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697599_1698787_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1698790_1699141_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700890_1701862_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701875_1702589_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702593_1703511_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703617_1703914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704012_1704963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1706121_1709055_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1709054_1709399_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1709395_1711024_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_023852885.1|1711023_1711500_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1711499_1711781_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1711777_1712104_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1712259_1713210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1713253_1713796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1713893_1714742_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1714791_1715241_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1715237_1716239_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1716251_1717046_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1717094_1718996_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1718992_1719616_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1719742_1720867_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1721247_1722852_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1723007_1723784_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1723868_1724867_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1724863_1725637_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_054604408.1|1726621_1727572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1727595_1728060_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1728206_1729415_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1729458_1729896_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1730014_1731304_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1734044_1734995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1735093_1736110_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1736288_1737323_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1737319_1737946_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1737942_1738995_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1739044_1739815_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1739865_1740702_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1740897_1741638_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1741712_1742456_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1743132_1743891_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1745028_1746318_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1747928_1749176_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1749185_1750895_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1750891_1751830_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1751826_1753110_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1753113_1753596_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1753596_1754583_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1754755_1755475_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1755591_1756542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1909396	1959678	4113750	transposase,tRNA	Faecalibacterium_phage(33.33%)	46	NA	NA
WP_005012067.1|1909396_1910347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|1910428_1910977_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|1910979_1911318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|1911712_1914304_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_033446353.1|1914586_1915114_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.0e-06
WP_003810206.1|1915126_1915513_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|1915519_1915810_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|1915945_1916245_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|1916313_1917216_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|1917219_1917990_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|1918375_1918825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1918892_1919843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853556.1|1919829_1920060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926318.1|1920204_1921116_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1921341_1922859_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1924090_1925053_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1925141_1925390_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|1931947_1932391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|1932455_1932728_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|1932724_1933672_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|1933853_1935248_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|1935270_1935666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|1935662_1936922_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|1937043_1938099_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|1938101_1938761_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|1938776_1941434_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1941511_1942714_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1942710_1943223_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1943345_1943783_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1944059_1945010_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1945108_1946059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1946544_1946721_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|1947405_1948377_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|1948380_1949235_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|1949253_1950075_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|1950106_1950901_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|1950949_1951555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|1951512_1952346_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|1952631_1954137_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1954178_1954961_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|1955030_1955477_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|1955473_1956700_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1956692_1957097_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1957256_1957559_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1957555_1958506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1958727_1959678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	1977517	2101037	4113750	transposase,protease,tRNA	Vibrio_phage(11.76%)	111	NA	NA
WP_010930730.1|1977517_1978468_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1978427_1979063_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1979422_1980745_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1981063_1981885_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1983309_1983882_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|1983921_1985751_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|1985713_1986772_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|1986809_1987271_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|1987355_1988102_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|1989592_1992823_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|1992889_1994221_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|1994473_1994848_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1994950_1996129_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|1996139_1996730_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|1996840_1997647_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|1997672_1998467_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|1999467_2000442_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2000600_2001113_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2001269_2002241_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853104.1|2003985_2004780_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2004788_2006090_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2006040_2006805_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2006918_2007689_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2007773_2008961_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2009033_2009408_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2009508_2010771_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2010767_2011625_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2011797_2012799_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2013250_2014201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2015764_2016916_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2017284_2017521_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2017584_2017752_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2017865_2019761_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2019924_2020875_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2020973_2021924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2022022_2022319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2022493_2023846_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2023988_2025005_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2026984_2027998_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2028084_2028990_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2029146_2029491_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2029648_2030107_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2030120_2032337_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2032333_2033395_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2033423_2034398_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2034349_2035168_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2035180_2035789_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2035963_2036359_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2036377_2037817_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2037845_2038193_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2038211_2039162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2039814_2040765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2040848_2042666_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2042739_2043387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2043399_2044329_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2044498_2044963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2045210_2045891_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2045939_2047631_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2047646_2048198_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2048194_2048566_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2048678_2049515_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2049525_2050050_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2050147_2050327_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2050456_2051431_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2051561_2051918_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2051907_2052783_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2052881_2053766_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2053787_2055083_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2056031_2056682_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2056769_2058290_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2058547_2060413_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2061458_2062409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2062426_2062567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2063381_2063741_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2063728_2065165_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2065161_2065815_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2065811_2067005_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2067108_2068383_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2068379_2069330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2069496_2070471_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2070467_2070611_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2072232_2072895_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2072897_2073074_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2073070_2074009_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2074100_2075591_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2075676_2075829_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2075842_2076082_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2076177_2076921_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2076953_2077454_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2077552_2078476_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2078472_2079234_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2079249_2080335_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2080534_2081485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081444_2081858_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082142_2082442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2082851_2085134_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2085599_2085794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2085819_2087850_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087869_2088082_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088359_2088899_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2089012_2090308_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090384_2091542_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091725_2092625_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092643_2093948_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093913_2095020_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095107_2095344_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095482_2096553_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096556_2097912_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_057110966.1|2097938_2099096_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099101_2099740_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2099741_2101037_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 19
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	2104815	2166188	4113750	transposase,tRNA	Klosneuvirus(28.57%)	53	NA	NA
WP_010930794.1|2104815_2107698_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107790_2108546_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109311_2110661_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110759_2111710_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111808_2112759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112832_2113306_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113331_2114540_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114536_2115310_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115309_2115933_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116098_2116359_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116662_2117244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117310_2117565_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117551_2120176_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2120247_2121066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2121062_2121668_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2121705_2122839_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2124554_2124929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2125026_2126301_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2126304_2127882_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2128788_2130144_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2130140_2131775_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2131767_2132598_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2132615_2133560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2133612_2135187_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446181.1|2135234_2135600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2135586_2135907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2136022_2136955_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2137057_2138014_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2138163_2139501_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2139505_2140762_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2140957_2142004_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2142061_2142430_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2142560_2143433_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2143509_2144412_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2145468_2146686_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010931532.1|2147959_2148910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2149008_2149959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2150159_2150969_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2151093_2152044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2152040_2152934_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2153058_2153253_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2153252_2153594_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2153603_2155466_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2155595_2156108_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2156110_2156434_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2156435_2156846_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2156883_2158095_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2158112_2158625_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2158840_2159332_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2159584_2161621_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2161698_2162901_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2163029_2163680_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2165237_2166188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	2181138	2247045	4113750	transposase,protease,tRNA	Lake_Baikal_phage(12.5%)	57	NA	NA
WP_010930556.1|2181138_2182443_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2182547_2183201_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2183203_2184514_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2184710_2185271_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2185382_2185583_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2185928_2186495_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2186578_2186782_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2187088_2187409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2187450_2187732_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2187806_2189063_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2189445_2189775_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2191345_2192167_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2192166_2193306_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2193312_2194209_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2194223_2196131_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2196490_2199103_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2199155_2201456_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2201452_2202661_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2202922_2203297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2203293_2204244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2204342_2206337_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2206396_2207362_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2207351_2210213_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2210215_2210722_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2210826_2212035_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2212036_2212975_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2213136_2213610_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2213606_2214557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2214667_2215108_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2215236_2216466_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2216504_2217326_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2217379_2218531_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852690.1|2218622_2219093_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2221661_2224211_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2224281_2226855_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2227120_2227321_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2227352_2227514_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2227571_2227910_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2228058_2229009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2229107_2230058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2230832_2231501_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2231482_2233438_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2233680_2234430_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2234442_2235306_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2235309_2236725_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2236858_2237587_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2237725_2237926_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2238101_2238500_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2238523_2239924_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2240042_2240795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2241083_2241761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2241787_2242567_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2242563_2243448_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2243465_2244245_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2244229_2244988_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2245125_2245761_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2246028_2247045_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	2492405	2558289	4113750	transposase,protease,tRNA	Planktothrix_phage(22.22%)	60	NA	NA
WP_004566381.1|2492405_2493893_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2493930_2494989_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2494988_2495489_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2495501_2496101_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2496097_2496598_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2496599_2497829_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2498018_2498258_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2498440_2499193_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2499194_2500130_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2500211_2501198_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2501197_2502256_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2502312_2502495_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2502546_2503140_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2503248_2503848_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2503844_2504555_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2504556_2505384_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2507200_2508442_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2508453_2509227_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2509253_2510204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2510683_2511340_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2511354_2513022_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2513024_2513654_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2513865_2514960_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2515104_2515917_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2515920_2517504_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2517674_2518805_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2518991_2520068_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2520149_2520800_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2520814_2522218_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2522501_2523320_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2523316_2524021_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2524920_2526036_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2526069_2526444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2526466_2527624_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2527636_2527870_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2528504_2531474_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2531488_2531698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2531849_2532479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2532475_2534533_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2534589_2535270_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2535266_2535827_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2535833_2536931_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2537083_2537677_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2537673_2538966_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2538979_2539522_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2539531_2540368_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2540401_2541463_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2541504_2542557_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2542572_2542875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2543016_2543967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2544145_2545840_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2545836_2546922_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2546969_2547869_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2547879_2548524_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2549545_2552788_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2552798_2553953_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2554179_2555142_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2555240_2556191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2556289_2557240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2557338_2558289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	2610826	2677326	4113750	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2610826_2611777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2612146_2612719_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2612721_2613732_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2613724_2614225_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2614235_2614577_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2614645_2615380_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2615396_2615666_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2615688_2616477_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2616523_2617540_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2617756_2619199_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2619377_2620997_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2621117_2622938_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2623016_2624549_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2624582_2626229_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2626298_2627321_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2627338_2628472_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2628474_2629164_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2629163_2629949_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2629992_2630757_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2630795_2632217_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2632282_2632987_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2633034_2633454_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2633466_2633874_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2634057_2634768_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2634894_2635185_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2635202_2635685_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2640190_2641345_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|2641650_2642667_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2642913_2643702_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2643768_2644449_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2644445_2645216_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2645314_2646265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2646320_2647238_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2647248_2648427_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2648446_2649442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2651030_2651639_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2651626_2652667_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2652684_2653647_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2653643_2654837_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2654833_2655631_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2655656_2656643_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2656661_2658701_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2658902_2659583_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2659596_2660508_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2660504_2661083_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2661221_2662127_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2662134_2665554_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2665541_2668142_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2669097_2669730_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2670123_2670882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2670878_2672081_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2672268_2673219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2674126_2675272_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2675258_2676014_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2676130_2676310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2676375_2677326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	2839891	2905475	4113750	transposase,tRNA	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2839891_2840842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2840940_2841891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2842093_2843083_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2843166_2843520_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2843597_2844206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2845879_2846458_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2846482_2847436_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2847475_2848393_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2848514_2849441_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2849448_2850195_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2850521_2851463_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2851689_2853387_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2853821_2855243_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2855396_2856176_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2856300_2857179_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2857284_2858409_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2858454_2859417_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2859409_2860264_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2860371_2860782_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2860778_2861729_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2861827_2862709_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2862786_2864166_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2864204_2865050_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2865065_2865380_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2865412_2865949_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2866121_2866697_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2866799_2867537_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2867604_2869242_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2869349_2870105_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2870092_2871055_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2871162_2871957_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2872018_2874094_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2874258_2876634_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2876714_2878070_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2879548_2880271_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2880325_2881309_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2881438_2882389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2882385_2883288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2883375_2884134_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2884146_2885238_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2885335_2886763_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2886992_2888207_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2888252_2891123_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2893533_2894022_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2894147_2896844_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2896998_2899281_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2899445_2900078_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2900176_2901127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2901173_2901728_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2901795_2902641_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2902710_2903679_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2903678_2905475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	2923046	2983989	4113750	transposase,tRNA,holin	Catovirus(22.22%)	50	NA	NA
WP_010930190.1|2923046_2924567_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2924609_2924912_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2924908_2925541_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2925619_2927485_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2927481_2928276_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2928304_2929420_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2930324_2931203_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2931202_2932027_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2932194_2933145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2933357_2936207_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2936188_2936917_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2937057_2938521_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2938517_2938889_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2938906_2940220_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2940256_2940715_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940827_2941778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2941774_2942788_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2942927_2943914_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2944272_2944980_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2945560_2946511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2946662_2947265_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2947283_2947916_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2947960_2948212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2948153_2950040_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2950058_2950901_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2950897_2952256_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2952476_2953271_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2953501_2954995_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2955230_2957312_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2957506_2958547_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2958681_2959698_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2959719_2960577_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2960621_2961398_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2961765_2962716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2962742_2963207_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2964413_2966702_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2966818_2967691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2967733_2968888_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2968922_2969753_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2969836_2971381_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2971423_2971783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2971784_2972198_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2972238_2972556_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2972640_2973357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2973620_2975042_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|2976244_2977195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2979237_2980254_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2980589_2981231_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2981321_2982758_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2982915_2983989_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 25
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	2988875	3061395	4113750	transposase,tRNA	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2988875_2989892_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2990832_2992260_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2992256_2993279_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2993268_2993742_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2993882_2994770_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2994766_2996410_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2996406_2997414_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2998244_2999261_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2999360_2999993_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3000001_3000391_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3000443_3001496_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3002359_3004066_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3004139_3004640_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3004654_3006712_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3006738_3007032_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3007133_3008081_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3008093_3008969_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3009089_3009650_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3009684_3010008_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3010443_3011181_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3011479_3012430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3012673_3012937_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3013010_3013292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3013308_3014169_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3014165_3014501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3014554_3015205_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3016885_3017830_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3017875_3018193_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3018195_3019134_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3019311_3019797_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3019815_3020364_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3020395_3020548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3021877_3022519_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3022673_3025022_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3025018_3025957_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3025982_3027173_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3027169_3027943_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3027972_3029166_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3029283_3030294_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3030311_3032348_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3032542_3033283_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3033381_3034332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3034374_3035550_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3035771_3037562_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3037574_3039236_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3039248_3041954_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3042246_3044001_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3043997_3044624_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3044620_3045472_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3045601_3047662_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3047848_3048463_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3048608_3048860_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3048929_3050312_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3050308_3053488_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3054295_3055213_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3055264_3055996_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3056055_3056628_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3058136_3059153_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3059290_3060340_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3060444_3061395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	3080795	3145735	4113750	transposase	Bacillus_phage(18.18%)	59	NA	NA
WP_005012067.1|3080795_3081746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3081844_3082429_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3082463_3083453_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3083449_3084391_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3084387_3085608_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3085650_3085965_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3086156_3086516_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3086517_3088233_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3088420_3089092_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3089106_3090435_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3090431_3091331_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3091417_3092503_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3092495_3093626_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3093628_3096310_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3096680_3097262_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3097387_3098113_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3098109_3098787_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3099002_3100184_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3100956_3101139_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3101168_3102119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3102248_3102641_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3102917_3103829_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3103953_3104928_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3104924_3105875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3105973_3107059_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3107156_3107567_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3108182_3110096_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3110231_3112844_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3112845_3113580_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3113743_3114925_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3114921_3115134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3115130_3116111_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3116156_3116984_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3117133_3118948_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3119002_3119386_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3119382_3120333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3120445_3120697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3120890_3121106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3121202_3122321_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3122440_3122653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3122812_3123034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3123086_3124037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3125213_3126584_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3126616_3127408_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3127420_3128476_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3128501_3129377_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3129482_3129731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3129765_3131220_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3131216_3131738_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3131766_3133119_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3133342_3136231_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3138375_3139677_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3139691_3140408_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3140689_3141370_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3141381_3141549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3141657_3141804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3141897_3142557_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3142955_3144788_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3144784_3145735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	3237357	3353614	4113750	transposase,tRNA	Planktothrix_phage(30.0%)	96	NA	NA
WP_005012067.1|3237357_3238308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|3238406_3239357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3239353_3240373_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3240382_3243091_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3243238_3243895_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3243993_3244944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3245091_3245985_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3246184_3247879_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3247913_3248840_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3248908_3250006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3250024_3250888_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3250899_3251682_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3251678_3252797_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3252793_3254326_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3254366_3255374_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3255518_3256241_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3256256_3257279_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3257595_3258330_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3258414_3260160_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3260156_3260909_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3260953_3261910_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3261998_3262565_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3262572_3263433_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3263462_3264191_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3264222_3264906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3265743_3266658_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3266722_3267631_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3267721_3269146_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3269147_3270470_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3270466_3272605_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3272682_3277803_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3277903_3278212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3278281_3278839_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3278854_3280336_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3280390_3282244_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3282506_3283844_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3283878_3285876_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3285893_3287942_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3288072_3288939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3289207_3290173_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3290287_3291436_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3291860_3292172_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3292205_3292466_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3292615_3293749_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3293819_3294956_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3295121_3295916_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3295978_3296422_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3296537_3297488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3297589_3298018_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3298090_3300286_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3300507_3301458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3301556_3302507_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3302466_3302991_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3303122_3304094_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3304213_3306658_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3306673_3307264_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3307507_3308458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3308615_3309881_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3309914_3311012_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3311666_3312617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3312617_3313187_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3313254_3314070_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3314236_3315856_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3315934_3316876_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3316875_3317760_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3317763_3319416_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3319455_3320853_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3320894_3322274_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3322313_3322532_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3322872_3323745_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3323904_3324855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3324953_3325904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3326002_3326953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3327684_3328062_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3328046_3328748_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3328891_3329584_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_023852735.1|3329583_3330624_-	phosphotransferase	NA	NA	NA	NA	NA
WP_033446130.1|3330802_3333169_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3333165_3334725_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3334749_3335547_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3335578_3336724_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3336828_3338271_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3338273_3339503_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3341640_3342591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3343720_3344278_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3344253_3344604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3344772_3345567_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3345563_3346613_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3346612_3347302_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3347388_3347886_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3347917_3349234_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3349250_3350225_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3350261_3350720_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3350719_3351400_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3351402_3351831_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3351883_3353614_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 28
NZ_CP013884	Bordetella pertussis strain J093 chromosome, complete genome	4113750	3359780	3418067	4113750	tail,tRNA,transposase,protease,terminase	uncultured_Caudovirales_phage(17.39%)	61	NA	NA
WP_010931429.1|3359780_3363737_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3363729_3364119_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3364115_3364649_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3364716_3365076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3365085_3367698_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3367723_3368014_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3368031_3368361_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3368370_3368889_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3369143_3369644_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3369651_3370074_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3370070_3370469_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3370465_3370861_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3370860_3371061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3371062_3371545_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3371607_3371859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3372533_3373484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3373912_3374515_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3374637_3374880_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3374885_3375941_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3375969_3377388_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3377390_3378668_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3378654_3379140_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3379779_3380730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3380986_3381676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3381668_3381920_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3382474_3383086_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3383157_3383364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3383615_3384566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3384664_3385738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3385905_3386700_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3386739_3387264_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3387256_3388999_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3389208_3389967_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3389969_3390677_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3390693_3391575_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3391585_3392344_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3392312_3393068_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3393137_3394556_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3394577_3395228_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3395361_3395697_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3395785_3396736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3396812_3398633_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3398637_3399711_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3399833_3400802_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3400875_3401787_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3401805_3402378_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3402458_3403007_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3403006_3404596_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3404665_3404905_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3404945_3405971_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_033446131.1|3406036_3407209_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3407314_3407767_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3407776_3409117_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3409433_3410471_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3410852_3411212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3411295_3412237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3412311_3413262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3413555_3414650_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3414740_3415613_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3415634_3416474_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3416549_3418067_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
