The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	27282	70036	4107418	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	77634	136108	4107418	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033446324.1|127021_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	164892	225403	4107418	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	233335	286923	4107418	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|253616_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	390856	448365	4107418	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_023853020.1|416465_417467_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_042962164.1|417401_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	591468	652659	4107418	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591468_592419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592894_593785_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593781_594603_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613547_614519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620991_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625077_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_033446151.1|627370_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640145_641498_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642117_642867_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648341_649214_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	657983	704174	4107418	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657983_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680590_680797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682034_682286_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682278_682968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684814_685300_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685286_686564_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692893_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694310_694811_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695065_695584_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695593_695923_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695940_696231_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696256_698869_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698878_699238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699305_699839_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699835_700225_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700217_704174_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	710340	780416	4107418	transposase,tRNA	Planktothrix_phage(40.0%)	58	NA	NA
WP_003814636.1|710340_712071_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712123_712552_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712554_713235_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713234_713693_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713729_714704_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714720_716037_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716068_716566_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716652_717342_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717341_718391_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718387_719182_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719350_719701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719676_720234_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721363_722314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724451_725681_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725683_727126_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727230_728376_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728407_729205_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729229_730789_-	chaperone SurA	NA	NA	NA	NA	NA
WP_033446130.1|730785_733152_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_023852735.1|733330_734371_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734370_735063_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735206_735908_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735892_736270_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737001_737952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738111_738984_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739324_739543_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739582_740962_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741003_742401_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742440_744093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744096_744981_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744980_745922_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746000_747620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747786_748602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748669_749239_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749239_750190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750844_751942_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751975_753241_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929982.1|754591_755182_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755197_757642_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757761_758733_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758864_759389_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010929969.1|759348_760299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760520_762716_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762788_763217_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763318_764269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|764384_764828_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|764890_765685_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|765850_766987_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|767057_768191_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|768340_768601_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|768634_768946_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|769370_770519_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|770633_771599_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|771867_772734_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|772864_774913_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|774930_776928_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|776962_778300_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_023853308.1|778562_780416_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	886858	954834	4107418	transposase	Bacillus_phage(33.33%)	58	NA	NA
WP_023994644.1|886858_887875_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888071_889055_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890653_892042_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892072_893062_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893172_894405_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894686_895487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895509_897741_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898528_898975_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898996_899743_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899886_900864_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901497_902109_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902102_903320_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903460_904411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904407_905127_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905247_907407_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907497_907767_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907855_908062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908060_908588_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908606_909386_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909553_910570_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910642_911134_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911144_912860_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914023_914974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914970_916803_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917201_917861_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917954_918101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918209_918377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918388_919069_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919350_920067_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920081_921383_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923527_926416_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926639_927992_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928020_928542_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928538_929993_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930027_930276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930381_931257_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931282_932338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932350_933142_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933174_934545_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935721_936672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936724_936946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937105_937318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937437_938556_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938652_938868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939061_939313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939425_940376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940372_940756_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940810_942625_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942774_943602_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943647_944628_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944624_944837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944833_946015_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946178_946913_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946914_949527_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949662_951576_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952191_952602_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952699_953785_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953883_954834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	998363	1070880	4107418	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998363_999314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999418_1000468_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000605_1001622_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003130_1003703_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003762_1004494_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004545_1005463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006270_1009450_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009446_1010829_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010898_1011150_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011295_1011910_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012096_1014157_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014286_1015138_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015134_1015761_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015757_1017512_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017804_1020510_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020522_1022184_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022196_1023987_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024208_1025384_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025426_1026377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026475_1027216_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027410_1029447_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029464_1030475_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030592_1031786_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031815_1032589_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032585_1033776_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033801_1034740_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034736_1037085_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037239_1037881_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039210_1039363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039394_1039943_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039961_1040447_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040624_1041563_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041565_1041883_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041928_1042873_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044553_1045204_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045257_1045593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045589_1046450_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046466_1046748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046821_1047085_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047328_1048279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048577_1049315_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049750_1050074_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050108_1050669_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050789_1051665_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051677_1052625_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052726_1053020_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053046_1055104_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055118_1055619_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055692_1057399_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058262_1059315_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059367_1059757_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059765_1060398_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_023853536.1|1060497_1061514_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062344_1063352_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063348_1064992_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064988_1065876_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066016_1066490_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066479_1067502_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067498_1068926_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010929632.1|1069863_1070880_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1074633	1136709	4107418	transposase,tRNA,holin	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1074633_1075770_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075766_1076840_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076997_1078434_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078524_1079166_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079501_1080518_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1082560_1083511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084713_1086135_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086398_1087115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087199_1087517_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087557_1087971_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087972_1088332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088374_1089919_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090002_1090833_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090867_1092022_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092064_1092937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093053_1095342_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096548_1097013_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097039_1097990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098007_1098145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098357_1099134_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099178_1100036_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100057_1101074_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101208_1102249_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102443_1104525_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104760_1106254_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106484_1107279_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107499_1108858_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108854_1109697_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109715_1111602_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111543_1111795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111839_1112472_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112490_1113093_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113244_1114195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114775_1115483_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115841_1116828_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116967_1117981_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117977_1118928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119040_1119499_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119535_1120849_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120866_1121238_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121234_1122698_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122838_1123567_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123548_1126398_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126610_1127561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127728_1128553_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128552_1129431_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130335_1131451_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131479_1132274_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132270_1134136_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134214_1134847_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134843_1135146_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135188_1136709_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1154279	1220799	4107418	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1154279_1156076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156075_1157044_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157113_1157959_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158026_1158581_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158627_1159578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159676_1160309_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160474_1162757_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162911_1165608_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165733_1166222_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168632_1171503_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171548_1172763_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172992_1174420_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174517_1175609_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175621_1176380_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176467_1177370_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177366_1178317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178446_1179430_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179484_1180207_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181685_1183041_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183121_1185497_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185661_1187737_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187798_1188593_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188700_1189663_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189650_1190406_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190513_1192151_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192218_1192956_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193058_1193634_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193806_1194343_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194375_1194690_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194705_1195551_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195589_1196969_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197046_1197928_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198026_1198977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198973_1199384_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199491_1200346_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200338_1201301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201346_1202471_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202576_1203455_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203579_1204359_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204512_1205934_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206368_1208066_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208292_1209234_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209560_1210307_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210314_1211241_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211362_1212280_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212319_1213273_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213297_1213876_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215549_1216158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216235_1216589_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216672_1217662_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1217864_1218815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218901_1219852_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1219848_1220799_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1271727	1330528	4107418	transposase	Salmonella_phage(28.57%)	50	NA	NA
WP_005013747.1|1271727_1272678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1276424_1277036_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1277258_1278719_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1278815_1280408_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1280761_1281019_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1281020_1282361_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1282456_1283146_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1283158_1284589_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1286313_1287135_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1287145_1288717_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1288745_1289723_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1289749_1290553_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1290549_1291344_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1291351_1292587_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1292600_1293014_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|1293369_1293642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1293763_1294714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1295335_1297063_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1297174_1298533_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1298825_1299776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1299816_1300887_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300909_1301788_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301959_1302931_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1303093_1303936_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1304097_1304778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1304771_1305941_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305937_1306969_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1307036_1308254_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1308288_1309821_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309901_1310525_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1310555_1311167_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1311202_1311673_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1312104_1313109_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1313145_1314660_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1314663_1315623_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1315651_1316455_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1316456_1318091_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1318174_1319236_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1319434_1319704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1319707_1320232_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010931011.1|1321593_1322628_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1322736_1323375_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1323669_1323897_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1324019_1324733_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324977_1325928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1326067_1326313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1326427_1327876_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327986_1328937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1328933_1329383_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1329577_1330528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1419170	1471322	4107418	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1419170_1420121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1420287_1420641_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420653_1421016_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1421057_1421483_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421685_1422942_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423140_1424121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424270_1425512_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425610_1426561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426569_1427265_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1430085_1430685_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430695_1432861_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432884_1434669_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434668_1434758_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435452_1435725_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435724_1437791_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437787_1438738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1438836_1439787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439902_1440235_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1440231_1440918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440904_1441864_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441896_1444266_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1444265_1444898_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444999_1446340_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1446386_1447742_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1448032_1448269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1448456_1448774_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1449046_1449562_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1449655_1449817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1449832_1450588_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450926_1451133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1451140_1451800_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1452094_1454299_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1454409_1455633_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1455755_1456730_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1456797_1457991_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1458005_1458806_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1458802_1460659_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1460655_1461261_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1461279_1462665_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1463390_1464617_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1464705_1465488_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1465586_1466537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1466563_1467337_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1467348_1468590_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1470371_1471322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1515247	1583334	4107418	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1515247_1515736_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1515853_1516432_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1516537_1516906_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1517004_1517955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517961_1519074_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1519760_1520963_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1520998_1521145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1521166_1523827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1523839_1527244_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527911_1530137_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1530183_1530510_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1530560_1531169_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1531267_1532218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532287_1533052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1533048_1533585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533751_1534603_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534662_1535289_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535285_1536236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536334_1537447_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537436_1538438_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538543_1540055_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540051_1541356_-	imelysin	NA	NA	NA	NA	NA
WP_033446227.1|1541467_1542025_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930432.1|1542295_1542850_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543305_1543521_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543775_1546373_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546369_1547557_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548216_1548831_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548919_1550041_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550058_1550964_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551856_1552807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552988_1553741_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553809_1554469_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554465_1555194_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555206_1557486_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557510_1557714_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557755_1558388_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558523_1559441_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559437_1560151_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560388_1561159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561163_1561763_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562007_1563498_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563556_1563841_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1563978_1564134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1564406_1565333_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565469_1566210_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566376_1567753_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567934_1568840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570491_1572294_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1572420_1573062_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573160_1574111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574132_1575353_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575538_1576951_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1577014_1578082_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1578081_1579569_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579578_1580523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580682_1581381_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581458_1582364_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582383_1583334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1620332	1675922	4107418	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1620332_1621283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1621341_1622115_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1622107_1623664_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1623660_1624611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1625937_1626540_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1626779_1627481_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1627474_1628257_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1628441_1629392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1629490_1630228_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1630417_1631176_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1631222_1632212_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1632389_1633358_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1634897_1635866_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1635874_1636816_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1637289_1638300_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1638290_1639805_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1639801_1641148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1641150_1642185_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1642234_1643860_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1644412_1645363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1645467_1646415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1646468_1648283_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1648275_1648950_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1649079_1652154_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1652167_1652467_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1652781_1653405_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1653648_1654518_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1654495_1655440_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1655525_1656452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1656564_1657344_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1657334_1658531_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1658561_1659512_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1659733_1660423_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1660487_1661243_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1661294_1662287_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1662296_1663250_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1663365_1664328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1665729_1666158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1666154_1667105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1667398_1668121_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1668559_1669747_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1669750_1670101_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1671849_1672821_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1672834_1673548_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1673552_1674470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1674576_1674873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1674971_1675922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1833689	1892959	4107418	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1833689_1834640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1834764_1835574_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1835774_1836725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1837998_1839216_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1840272_1841175_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1841251_1842124_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1842254_1842623_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1842680_1843727_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1843922_1845179_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1845183_1846521_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1846670_1847627_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1847729_1848662_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1848777_1849098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446181.1|1849084_1849450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1849497_1851072_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1851124_1852069_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1852086_1852917_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1852909_1854544_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1854540_1855896_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1856802_1858380_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1858383_1859658_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1859755_1860130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1861845_1862979_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1863016_1863622_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1863618_1864437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1864508_1867133_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1867119_1867374_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1867440_1868022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1868325_1868586_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1868751_1869375_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1869374_1870148_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1870144_1871353_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1871378_1871852_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1871925_1872876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1872974_1873925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1874023_1875373_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1876138_1876894_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1876986_1879869_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1880191_1880617_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1880644_1881793_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1881789_1882296_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1882311_1883598_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1883647_1884943_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1884944_1885583_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1885588_1886746_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1886772_1888128_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1888131_1889202_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1889340_1889577_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1889664_1890771_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1890736_1892041_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1892059_1892959_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	1903199	1947521	4107418	transposase	Staphylococcus_phage(25.0%)	43	NA	NA
WP_005013747.1|1903199_1904150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1904248_1905199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1905398_1906484_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1906499_1907261_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1907257_1908181_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_010930780.1|1908279_1908780_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1908812_1909556_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1909651_1909891_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1909904_1910057_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1910142_1911633_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1911724_1912663_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1912659_1912836_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1912838_1913501_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1915122_1915266_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1915262_1916237_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1916403_1917354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1917350_1918625_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1918728_1919922_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1919918_1920572_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1920568_1922005_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1921992_1922352_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1923166_1923307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1923324_1924275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1925320_1927186_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1927443_1928964_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1929051_1929702_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1930650_1931946_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1931967_1932852_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1932950_1933826_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1933815_1934172_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1934302_1935277_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1935406_1935586_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1935683_1936208_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1936218_1937055_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1937167_1937539_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|1938101_1939793_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1939841_1940522_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1940769_1941234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1941403_1942333_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1942345_1942993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1943066_1944884_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1944967_1945918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1946570_1947521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	2173191	2222843	4107418	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2173191_2174142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2174240_2176235_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2176294_2177260_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2177249_2180111_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2180113_2180620_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2180724_2181933_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2181934_2182873_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2183034_2183508_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2183504_2184455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2184565_2185006_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2185134_2186364_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2186402_2187224_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2187277_2188429_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852690.1|2188520_2188991_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2191559_2194109_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2194179_2196753_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2197018_2197219_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2197250_2197412_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2197469_2197808_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2197956_2198907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2199680_2200349_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2200330_2202286_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2202528_2203278_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2203290_2204154_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2204157_2205573_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2205706_2206435_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2206573_2206774_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2206949_2207348_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2207371_2208772_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2208890_2209643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2209931_2210609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2210635_2211415_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2211411_2212296_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2212313_2213093_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2213077_2213836_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2213973_2214609_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2214876_2215893_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2215990_2217031_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2217165_2218458_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2219817_2220201_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2220218_2220806_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2220843_2221794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2221892_2222843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	2479149	2537393	4107418	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2479149_2480100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2480579_2481236_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2481250_2482918_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2482920_2483550_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2483761_2484856_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2485000_2485813_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2485816_2487400_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2487570_2488701_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2488887_2489964_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2490045_2490696_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2490710_2492114_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2492397_2493216_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2493212_2493917_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2494816_2495932_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2495965_2496340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2496362_2497520_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2497532_2497766_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2498400_2501370_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2501384_2501594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2501745_2502375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2502371_2504429_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2504485_2505166_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2505162_2505723_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2505729_2506827_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2506979_2507573_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2507569_2508862_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2508875_2509418_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2509427_2510264_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2510297_2511359_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2511400_2512453_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2512468_2512771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2512912_2513863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2514041_2515736_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2515732_2516818_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2516865_2517765_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2517775_2518420_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2519441_2522684_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2522694_2523849_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2524075_2525038_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2525136_2526087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2526185_2527136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2527145_2527835_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2527894_2528332_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2528377_2529271_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2529318_2530491_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2530487_2531642_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2531838_2532189_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2532178_2532613_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2532629_2533580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2533727_2534195_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2534175_2535333_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2535398_2536325_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2536442_2537393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	2645219	2710648	4107418	transposase	Planktothrix_phage(33.33%)	53	NA	NA
WP_010930208.1|2645219_2646170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930308.1|2648972_2652314_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930307.1|2652310_2654506_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930306.1|2654510_2656631_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930305.1|2656627_2658382_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930304.1|2659748_2662292_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930303.1|2665354_2666209_-	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_003811326.1|2666205_2667021_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930302.1|2667080_2668412_+	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811324.1|2668450_2668957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247534.1|2669196_2669550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811322.1|2669621_2670047_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247533.1|2670079_2670967_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930301.1|2670969_2671293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930300.1|2672529_2672934_+	DoxX family protein	NA	NA	NA	NA	NA
WP_019247530.1|2673115_2673547_+	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_023852768.1|2673779_2674187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2674285_2675236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2675334_2676285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2676377_2676917_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2677023_2677368_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2677425_2678874_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2679061_2679397_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2681024_2682203_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2682285_2682786_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2682895_2683597_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2683608_2684073_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930294.1|2685164_2685992_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2686117_2686588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2686714_2687608_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2687655_2688837_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2688849_2689665_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2689798_2690326_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2690322_2690820_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2690967_2691345_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2691566_2692517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2692615_2693227_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2693461_2694589_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2694699_2695788_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2695840_2696692_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2696711_2697593_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2697769_2699083_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2699293_2700127_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2700123_2700705_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2701058_2702009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2702024_2703140_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2703242_2704169_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2704168_2705407_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2705403_2706171_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2706171_2706873_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2706954_2707401_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2708290_2708929_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2709697_2710648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	2810824	2865341	4107418	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2810824_2811775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2812103_2812709_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2812762_2814076_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2814150_2814621_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2814620_2815409_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815419_2817072_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2817159_2818110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819271_2819778_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819774_2820539_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820554_2820839_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820903_2821893_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822064_2822994_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822965_2823652_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823685_2824231_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824275_2825541_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825537_2826440_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827621_2828566_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828660_2830178_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830219_2831848_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831955_2832837_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835949_2836324_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836348_2836687_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836730_2838365_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838403_2839750_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2839857_2841279_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841348_2841933_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842035_2842986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843120_2844227_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844237_2845335_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845479_2846685_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846691_2847213_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2847209_2847692_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847697_2847949_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847929_2848415_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848550_2852012_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852029_2852914_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852923_2853355_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853601_2854105_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854182_2855583_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855657_2856533_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856529_2857537_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858004_2858310_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858400_2858991_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859181_2860198_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860389_2862726_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862808_2863243_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2863341_2864292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864390_2865341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	2873366	2930152	4107418	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2873366_2874317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2876023_2876290_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2876997_2877336_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881889_2882492_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2882588_2883878_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883935_2884667_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2884663_2885467_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885463_2886552_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2886548_2887478_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2887626_2888772_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2888793_2889744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2890074_2893896_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894052_2894721_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894725_2896399_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896417_2897737_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897741_2900057_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900112_2902281_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2902277_2907458_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907556_2907871_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908098_2908344_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908438_2908957_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909056_2910262_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910377_2911775_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911891_2912470_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912542_2913934_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914101_2915052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915332_2915953_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915949_2916363_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916359_2917403_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917458_2917647_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917656_2918421_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918511_2919168_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919259_2920018_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920043_2921645_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921845_2922850_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922950_2923214_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_023853341.1|2923331_2924099_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924698_2925649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|2928032_2929130_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929201_2930152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	2960538	3004229	4107418	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2960538_2961489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2961609_2962506_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964783_2967009_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967173_2968262_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968218_2968872_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968919_2969717_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970248_2971199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2971279_2972428_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972484_2973435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973533_2973839_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973867_2974302_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974303_2975548_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975544_2976255_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976269_2977181_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977543_2977948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977944_2978403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2978409_2979318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2979314_2980181_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980167_2980995_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981005_2982133_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983210_2984449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984490_2985753_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985759_2986512_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986563_2986749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987024_2987489_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_023996698.1|2987568_2988180_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988324_2990433_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990429_2991380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991483_2992104_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2992207_2992948_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994082_2995207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995252_2995621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995862_2996813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997848_2998391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998588_2998759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998776_2999727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2999723_3000632_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000758_3001595_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002107_3003217_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003278_3004229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	3384172	3449105	4107418	transposase,tRNA	Staphylococcus_phage(20.0%)	55	NA	NA
WP_023995489.1|3384172_3385123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385527_3386172_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386196_3386781_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386881_3387499_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387501_3389217_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389213_3389522_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389538_3390156_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390200_3390503_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390603_3391458_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391645_3391870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392039_3392312_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392729_3393137_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393506_3394301_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394401_3395637_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395705_3396722_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396733_3398110_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398106_3399303_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399299_3400838_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400834_3402094_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404034_3404985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405751_3406846_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406838_3408173_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408126_3408810_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3408835_3409999_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3409995_3410997_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3410996_3411869_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411865_3412615_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412611_3413403_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413399_3414539_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414814_3415600_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415633_3416416_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416419_3416809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417948_3418812_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418847_3419936_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_019247959.1|3421235_3424214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425140_3426019_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427967_3428918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428914_3429382_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429424_3430195_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430215_3431016_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431026_3432436_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432530_3433316_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433555_3434572_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434679_3435072_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435209_3435890_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435894_3436866_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436961_3437912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439416_3440118_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3440117_3441542_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442611_3443952_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3444067_3445831_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445942_3446821_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446933_3447749_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447752_3448004_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448088_3449105_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	3466849	3519254	4107418	transposase,tRNA	Acinetobacter_phage(37.5%)	48	NA	NA
WP_010931363.1|3466849_3467866_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467961_3468672_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468668_3469658_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469753_3471385_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471387_3472125_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472280_3473153_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473502_3474642_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474638_3475298_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475369_3476002_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476031_3476550_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476560_3477670_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477716_3478571_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478572_3479475_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480697_3481648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483402_3484392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484388_3484547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3484567_3485356_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485352_3486384_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486402_3486966_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487021_3488542_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488805_3489510_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489517_3490246_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490360_3490735_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490777_3492067_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492063_3493233_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493229_3494069_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494128_3495064_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495076_3496027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496125_3497088_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497119_3497479_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497603_3498506_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498507_3500280_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500314_3501091_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502414_3503365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3504216_3504537_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3504609_3505491_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3505607_3505850_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3505987_3506458_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3506470_3507010_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3507044_3508586_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3508684_3509590_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3509632_3511033_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3511042_3511465_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3511647_3512532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3512607_3513684_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3513990_3516093_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3516135_3518205_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3518303_3519254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	3536371	3590171	4107418	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3536371_3537322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537662_3538613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538711_3539662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539958_3540456_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540498_3542274_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542281_3543148_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931405.1|3543154_3543880_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023852623.1|3545058_3545829_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546142_3546733_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546766_3548095_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548169_3549315_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549426_3550425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550387_3550822_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552338_3553223_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553219_3554425_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554421_3555282_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555394_3557185_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|3557225_3557876_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|3557891_3558200_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558365_3559652_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561085_3562036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3563987_3565202_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565307_3566297_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566293_3566902_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566914_3567544_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567540_3568161_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568192_3568984_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569835_3570291_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570309_3571236_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571289_3572576_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573506_3574379_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574375_3575326_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575424_3576375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3576479_3576710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3576836_3577226_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3577242_3579624_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3579616_3580993_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3581008_3582004_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3582022_3583015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3583255_3583816_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3583820_3584147_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3584183_3584996_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3585006_3586089_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3586175_3587450_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3588172_3589123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3589220_3590171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013885	Bordetella pertussis strain J097 chromosome, complete genome	4107418	3708496	3841422	4107418	transposase,integrase,tRNA	uncultured_Mediterranean_phage(10.34%)	114	3753139:3753156	3797779:3797796
WP_005013747.1|3708496_3709447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3709443_3710079_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3710208_3711108_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3711203_3711695_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3711741_3712707_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3713840_3715082_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3715195_3716212_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3716246_3716723_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3716865_3717774_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3717887_3719000_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3719100_3719586_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3719722_3720973_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3721074_3721587_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3721685_3722636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3722701_3723640_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3723662_3724289_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3724285_3724942_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3724938_3725541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3725547_3726135_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3726315_3726885_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3726955_3728275_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3728381_3728573_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3728824_3730114_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3730268_3731264_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3731348_3732023_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3732019_3732970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3733131_3734373_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3734369_3735314_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3735432_3736383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3736342_3737272_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3737325_3737661_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3737705_3738470_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3738493_3739234_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3739241_3740795_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3740829_3741807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3742079_3742661_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3742712_3749615_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3750061_3750193_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3750458_3750665_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3751669_3752329_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3752356_3753502_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3753139:3753156	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3753642_3753978_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3754052_3754913_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3755176_3755878_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3756047_3756443_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3756552_3757503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3757513_3758155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3758321_3758564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3758662_3759613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3759648_3760116_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3760349_3760727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3760723_3760906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3760909_3761896_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3761892_3762540_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3762597_3763125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3763161_3764346_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3764356_3764698_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3764810_3765011_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3765007_3765997_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3767483_3769454_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3769695_3770094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3770102_3771026_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3771483_3772434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3772664_3774356_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3774404_3774677_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3774673_3775045_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3775140_3775275_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3775680_3777090_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3777092_3778202_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3778296_3780750_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3780868_3781660_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3781779_3783207_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3783245_3784217_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3784635_3785799_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3785886_3786732_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3788288_3789239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3789793_3790168_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3790242_3791301_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3791324_3792275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3795156_3796326_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3796426_3798034_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3797779:3797796	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3798080_3800102_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3800130_3800376_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3800389_3801580_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3801775_3802741_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3802763_3803903_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3804114_3805077_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3805200_3807225_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3807421_3809665_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3809943_3810402_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3811329_3813951_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3814014_3816642_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3816793_3817858_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3817857_3818628_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3818636_3819470_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3819482_3820262_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3820335_3821769_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3821796_3822555_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853380.1|3822610_3824452_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3824554_3825031_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3825047_3825968_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3826074_3826575_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3826948_3827641_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3827949_3828900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3828896_3832670_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3833006_3834896_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3834907_3835801_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3835904_3836702_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3836698_3837550_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3837611_3838292_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3838328_3838655_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3838655_3839615_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3839635_3840124_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010929632.1|3840405_3841422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
