assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	1	73087-73188	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA,NA|67aa|down_1|NZ_CP014201.1_74080_74281_+,NA|46aa|down_5|NZ_CP014201.1_79721_79859_+	NA|431aa|up_9|NZ_CP014201.1_61944_63237_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|243aa|up_8|NZ_CP014201.1_63236_63965_+	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|312aa|up_7|NZ_CP014201.1_64051_64987_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|197aa|up_6|NZ_CP014201.1_64983_65574_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|414aa|up_5|NZ_CP014201.1_65794_67036_+	PRK00549, PRK00549, competence damage-inducible protein A; Provisional	NA|351aa|up_4|NZ_CP014201.1_67087_68140_+	PRK09354, recA, recombinase A; Provisional	NA|524aa|up_3|NZ_CP014201.1_68764_70336_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|219aa|up_2|NZ_CP014201.1_70424_71081_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|422aa|up_1|NZ_CP014201.1_71108_72374_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|173aa|up_0|NZ_CP014201.1_72532_73051_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|186aa|down_0|NZ_CP014201.1_73242_73800_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|67aa|down_1|NZ_CP014201.1_74080_74281_+	NA	NA|788aa|down_2|NZ_CP014201.1_74382_76746_+	PRK12906, secA, preprotein translocase subunit SecA; Reviewed	NA|229aa|down_3|NZ_CP014201.1_78080_78767_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|296aa|down_4|NZ_CP014201.1_78756_79644_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|46aa|down_5|NZ_CP014201.1_79721_79859_+	NA	NA|366aa|down_6|NZ_CP014201.1_79914_81012_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|235aa|down_7|NZ_CP014201.1_81008_81713_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|556aa|down_8|NZ_CP014201.1_81705_83373_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|289aa|down_9|NZ_CP014201.1_83462_84329_+	TIGR02136, ptsS_2, phosphate binding protein
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	2	251840-251983	2	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|70aa|up_6|NZ_CP014201.1_241488_241698_-,NA|209aa|up_3|NZ_CP014201.1_244489_245116_+,NA|215aa|down_3|NZ_CP014201.1_255772_256417_-	NA|275aa|up_9|NZ_CP014201.1_238819_239644_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|348aa|up_8|NZ_CP014201.1_239826_240870_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|78aa|up_7|NZ_CP014201.1_241239_241473_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|70aa|up_6|NZ_CP014201.1_241488_241698_-	NA	NA|358aa|up_5|NZ_CP014201.1_242034_243108_+	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|307aa|up_4|NZ_CP014201.1_243310_244231_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|209aa|up_3|NZ_CP014201.1_244489_245116_+	NA	NA|489aa|up_2|NZ_CP014201.1_245194_246661_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|612aa|up_1|NZ_CP014201.1_246675_248511_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|883aa|up_0|NZ_CP014201.1_248961_251610_-	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|576aa|down_0|NZ_CP014201.1_252065_253793_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|233aa|down_1|NZ_CP014201.1_253965_254664_+	pfam02661, Fic, Fic/DOC family	NA|310aa|down_2|NZ_CP014201.1_254776_255706_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|215aa|down_3|NZ_CP014201.1_255772_256417_-	NA	NA|322aa|down_4|NZ_CP014201.1_256723_257689_+	pfam06081, ArAE_1, Aromatic acid exporter family member 1	NA|67aa|down_5|NZ_CP014201.1_258015_258216_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|81aa|down_6|NZ_CP014201.1_258435_258678_+	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|161aa|down_7|NZ_CP014201.1_258919_259402_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|212aa|down_8|NZ_CP014201.1_259407_260043_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|193aa|down_9|NZ_CP014201.1_260233_260812_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	3	432794-432882	3	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	TCCGCTTTTACGCCCATAACGCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA,NA	NA|250aa|up_9|NZ_CP014201.1_419294_420044_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|434aa|up_8|NZ_CP014201.1_420036_421338_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|177aa|up_7|NZ_CP014201.1_421463_421994_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|1155aa|up_6|NZ_CP014201.1_422096_425561_-	cd09118, PLDc_yjhR_C_like, C-terminal domain of Escherichia coli uncharacterized protein yjhR and similar proteins	NA|204aa|up_5|NZ_CP014201.1_425754_426366_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|161aa|up_4|NZ_CP014201.1_426541_427024_-	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|568aa|up_3|NZ_CP014201.1_427198_428902_+	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|386aa|up_2|NZ_CP014201.1_429222_430380_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|406aa|up_1|NZ_CP014201.1_430509_431727_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|221aa|up_0|NZ_CP014201.1_432050_432713_+	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|881aa|down_0|NZ_CP014201.1_433365_436008_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|429aa|down_1|NZ_CP014201.1_436287_437574_+	TIGR01499, Folylpolyglutamate_synthase, folylpolyglutamate synthase/dihydrofolate synthase	NA|215aa|down_2|NZ_CP014201.1_437570_438215_+	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	NA|223aa|down_3|NZ_CP014201.1_438320_438989_+	PRK00024, PRK00024, DNA repair protein RadC	NA|334aa|down_4|NZ_CP014201.1_439127_440129_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|287aa|down_5|NZ_CP014201.1_440216_441077_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|177aa|down_6|NZ_CP014201.1_441078_441609_+	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|219aa|down_7|NZ_CP014201.1_441623_442280_+	PRK00513, minC, septum formation inhibitor; Reviewed	NA|266aa|down_8|NZ_CP014201.1_442280_443078_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|219aa|down_9|NZ_CP014201.1_443668_444325_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	4	445967-446120	4	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	GACCTGCACATCAAGACCTTGGGCGCAATGACCAAAGTATGGCCATCACGC	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA,NA|111aa|down_2|NZ_CP014201.1_448298_448631_+	NA|215aa|up_9|NZ_CP014201.1_437570_438215_+	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	NA|223aa|up_8|NZ_CP014201.1_438320_438989_+	PRK00024, PRK00024, DNA repair protein RadC	NA|334aa|up_7|NZ_CP014201.1_439127_440129_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|287aa|up_6|NZ_CP014201.1_440216_441077_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|177aa|up_5|NZ_CP014201.1_441078_441609_+	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|219aa|up_4|NZ_CP014201.1_441623_442280_+	PRK00513, minC, septum formation inhibitor; Reviewed	NA|266aa|up_3|NZ_CP014201.1_442280_443078_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|219aa|up_2|NZ_CP014201.1_443668_444325_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|213aa|up_1|NZ_CP014201.1_444336_444975_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|271aa|up_0|NZ_CP014201.1_444971_445784_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|478aa|down_0|NZ_CP014201.1_446273_447707_+	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|40aa|down_1|NZ_CP014201.1_447788_447908_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|111aa|down_2|NZ_CP014201.1_448298_448631_+	NA	NA|144aa|down_3|NZ_CP014201.1_448806_449238_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|314aa|down_4|NZ_CP014201.1_449240_450182_+	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA|122aa|down_5|NZ_CP014201.1_450195_450561_+	COG4839, FtsL, Protein required for the initiation of cell division [Cell division and chromosome partitioning]	NA|715aa|down_6|NZ_CP014201.1_450557_452702_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|322aa|down_7|NZ_CP014201.1_452716_453682_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|460aa|down_8|NZ_CP014201.1_453710_455090_+	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	NA|364aa|down_9|NZ_CP014201.1_455090_456182_+	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	5	722357-722467	5	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	AGTCGTAGCAATCTCCATGTAAGGACCTT	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA,NA|108aa|down_5|NZ_CP014201.1_728816_729140_-	NA|153aa|up_9|NZ_CP014201.1_712570_713029_-	pfam02130, UPF0054, Uncharacterized protein family UPF0054	NA|329aa|up_8|NZ_CP014201.1_713032_714019_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|145aa|up_7|NZ_CP014201.1_714585_715020_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|up_6|NZ_CP014201.1_715047_715224_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|277aa|up_5|NZ_CP014201.1_715496_716327_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|296aa|up_4|NZ_CP014201.1_716323_717211_-	PRK01060, PRK01060, endonuclease IV; Provisional	NA|307aa|up_3|NZ_CP014201.1_717358_718279_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|149aa|up_2|NZ_CP014201.1_718583_719030_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|602aa|up_1|NZ_CP014201.1_719115_720921_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|428aa|up_0|NZ_CP014201.1_720922_722206_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|149aa|down_0|NZ_CP014201.1_722883_723330_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|441aa|down_1|NZ_CP014201.1_723417_724740_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|209aa|down_2|NZ_CP014201.1_724841_725468_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|149aa|down_3|NZ_CP014201.1_725467_725914_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|742aa|down_4|NZ_CP014201.1_726040_728266_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|108aa|down_5|NZ_CP014201.1_728816_729140_-	NA	NA|243aa|down_6|NZ_CP014201.1_729177_729906_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|315aa|down_7|NZ_CP014201.1_729944_730889_-	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|165aa|down_8|NZ_CP014201.1_730969_731464_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|202aa|down_9|NZ_CP014201.1_731460_732066_-	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	6	1389288-1390446	6,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Type II-A,Type II-C,Type II-B	GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,TGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	36,36,37,36	3	3	1389786-1389815|1389852-1389881|1389918-1389947	NZ_CP014201.1_302698-302669|NZ_CP014201.1_297765-297736|NZ_CP014201.1_3052783-3052754	NA:NA:NA:NA	17,17,14,14	17	TypeII-A,TypeII-C,TypeII-B	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|367aa|up_1|NZ_CP014201.1_1387442_1388543_-,NA	NA|215aa|up_9|NZ_CP014201.1_1376676_1377321_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|262aa|up_8|NZ_CP014201.1_1377386_1378172_-	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|483aa|up_7|NZ_CP014201.1_1378632_1380081_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|612aa|up_6|NZ_CP014201.1_1380099_1381935_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|291aa|up_5|NZ_CP014201.1_1382302_1383175_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|542aa|up_4|NZ_CP014201.1_1383306_1384932_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|565aa|up_3|NZ_CP014201.1_1384924_1386619_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_2|NZ_CP014201.1_1386830_1387256_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_1|NZ_CP014201.1_1387442_1388543_-	NA	NA|163aa|up_0|NZ_CP014201.1_1388750_1389239_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|473aa|down_0|NZ_CP014201.1_1390605_1392024_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	csn2|227aa|down_1|NZ_CP014201.1_1393159_1393840_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_2|NZ_CP014201.1_1393836_1394142_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_3|NZ_CP014201.1_1394119_1395025_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1364aa|down_4|NZ_CP014201.1_1395230_1399322_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|576aa|down_5|NZ_CP014201.1_1399602_1401330_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_6|NZ_CP014201.1_1401310_1403053_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_7|NZ_CP014201.1_1403049_1404063_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|down_8|NZ_CP014201.1_1404059_1405484_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|435aa|down_9|NZ_CP014201.1_1405715_1407020_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	7	1392048-1393139	3,7,2,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Type II-A,Type II-C,Type II-B	GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	36,36,36,36	4	6	1392480-1392509|1392480-1392509|1392480-1392509|1392546-1392575|1392876-1392905|1392942-1392971	NZ_CP014201.1_1800478-1800449|NZ_CP014202.1_20476-20447|NZ_CP014202.1_24236-24207|NZ_CP014201.1_3049339-3049310|NZ_CP014201.1_3048957-3048986|NZ_CP014201.1_3041915-3041886	NA:NA:NA:NA	10,16,16,10	16	TypeII-A,TypeII-C,TypeII-B	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|367aa|up_2|NZ_CP014201.1_1387442_1388543_-,NA	NA|262aa|up_9|NZ_CP014201.1_1377386_1378172_-	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|483aa|up_8|NZ_CP014201.1_1378632_1380081_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|612aa|up_7|NZ_CP014201.1_1380099_1381935_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|291aa|up_6|NZ_CP014201.1_1382302_1383175_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|542aa|up_5|NZ_CP014201.1_1383306_1384932_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|565aa|up_4|NZ_CP014201.1_1384924_1386619_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_3|NZ_CP014201.1_1386830_1387256_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_2|NZ_CP014201.1_1387442_1388543_-	NA	NA|163aa|up_1|NZ_CP014201.1_1388750_1389239_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|473aa|up_0|NZ_CP014201.1_1390605_1392024_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	csn2|227aa|down_0|NZ_CP014201.1_1393159_1393840_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP014201.1_1393836_1394142_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP014201.1_1394119_1395025_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1364aa|down_3|NZ_CP014201.1_1395230_1399322_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|576aa|down_4|NZ_CP014201.1_1399602_1401330_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_5|NZ_CP014201.1_1401310_1403053_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_6|NZ_CP014201.1_1403049_1404063_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|down_7|NZ_CP014201.1_1404059_1405484_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|435aa|down_8|NZ_CP014201.1_1405715_1407020_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|340aa|down_9|NZ_CP014201.1_1407120_1408140_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	8	2123350-2123637	5	PILER-CR	no		DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	GGCGCAGGGACCTGCATGTAAGGACCTTGGTCGCAATGGCCAAGACCGGGCCATCACGAC	60	1	1	2123530-2123595	NZ_CP014201.1_2123638-2123703	NA	2	2	Orphan	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|191aa|up_5|NZ_CP014201.1_2114303_2114876_+,NA|204aa|up_4|NZ_CP014201.1_2115964_2116576_+,NA|92aa|up_1|NZ_CP014201.1_2121624_2121900_-,NA|108aa|down_2|NZ_CP014201.1_2125141_2125465_+	NA|424aa|up_9|NZ_CP014201.1_2109195_2110467_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|up_8|NZ_CP014201.1_2110557_2111577_+	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|283aa|up_7|NZ_CP014201.1_2111752_2112601_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|292aa|up_6|NZ_CP014201.1_2112597_2113473_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|191aa|up_5|NZ_CP014201.1_2114303_2114876_+	NA	NA|204aa|up_4|NZ_CP014201.1_2115964_2116576_+	NA	NA|536aa|up_3|NZ_CP014201.1_2119153_2120761_+	cd13627, PBP2_AA_binding_like_2, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|249aa|up_2|NZ_CP014201.1_2120764_2121511_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|92aa|up_1|NZ_CP014201.1_2121624_2121900_-	NA	NA|426aa|up_0|NZ_CP014201.1_2121927_2123205_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|239aa|down_0|NZ_CP014201.1_2123863_2124580_-	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|113aa|down_1|NZ_CP014201.1_2124651_2124990_-	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|108aa|down_2|NZ_CP014201.1_2125141_2125465_+	NA	NA|157aa|down_3|NZ_CP014201.1_2125946_2126417_+	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|505aa|down_4|NZ_CP014201.1_2126409_2127924_+	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|259aa|down_5|NZ_CP014201.1_2127955_2128732_+	COG3910, COG3910, Predicted ATPase [General function prediction only]	NA|289aa|down_6|NZ_CP014201.1_2128842_2129709_+	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_7|NZ_CP014201.1_2129848_2130589_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|485aa|down_8|NZ_CP014201.1_2130585_2132040_-	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|487aa|down_9|NZ_CP014201.1_2132322_2133783_-	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily
GCF_001988935.1_ASM198893v1	NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	9	2207513-2207626	8	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	ACGGCTCCGAAACGCGCTCTCCAGCGCAGAA	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|69aa|up_7|NZ_CP014201.1_2198745_2198952_-,NA|73aa|up_6|NZ_CP014201.1_2199091_2199310_-,NA	NA|163aa|up_9|NZ_CP014201.1_2197286_2197775_-	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE	NA|255aa|up_8|NZ_CP014201.1_2197776_2198541_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|69aa|up_7|NZ_CP014201.1_2198745_2198952_-	NA	NA|73aa|up_6|NZ_CP014201.1_2199091_2199310_-	NA	NA|540aa|up_5|NZ_CP014201.1_2199608_2201228_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|634aa|up_4|NZ_CP014201.1_2201353_2203255_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|463aa|up_3|NZ_CP014201.1_2203295_2204684_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|256aa|up_2|NZ_CP014201.1_2205156_2205924_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|279aa|up_1|NZ_CP014201.1_2205941_2206778_-	PRK02944, PRK02944, YidC family membrane integrase SpoIIIJ	NA|119aa|up_0|NZ_CP014201.1_2206807_2207164_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|47aa|down_0|NZ_CP014201.1_2207758_2207899_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|450aa|down_1|NZ_CP014201.1_2208644_2209994_+	PRK00149, dnaA, chromosomal replication initiator protein DnaA	NA|380aa|down_2|NZ_CP014201.1_2210167_2211307_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|71aa|down_3|NZ_CP014201.1_2211800_2212013_+	pfam13275, S4_2, S4 domain	NA|373aa|down_4|NZ_CP014201.1_2212009_2213128_+	PRK00064, recF, recombination protein F; Reviewed	NA|654aa|down_5|NZ_CP014201.1_2213159_2215121_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|871aa|down_6|NZ_CP014201.1_2215183_2217796_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|235aa|down_7|NZ_CP014201.1_2217868_2218573_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|143aa|down_8|NZ_CP014201.1_2218682_2219111_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|99aa|down_9|NZ_CP014201.1_2219237_2219534_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed
