The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	27282	78584	4107596	transposase,tRNA	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814398.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37011_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41317_42211_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43662_44613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	164891	303015	4107596	transposase,tRNA,protease	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167285_168188_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169077_170508_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170541_171171_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929664.1|176364_176892_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176983_177799_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177859_178594_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181333_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184323_187998_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188629_189052_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189079_189499_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189527_189974_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190752_193023_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193098_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194401_195352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195454_196090_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196086_196980_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197374_198475_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198556_198931_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198990_201855_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201999_202740_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202809_204021_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204049_205018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205631_206582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206738_207062_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207166_208207_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208212_208992_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209037_209334_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209359_209635_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209691_210336_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210335_211022_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211220_212003_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212053_212779_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212810_214160_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214271_215204_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215661_218457_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219050_221894_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222064_222784_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222822_223371_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223525_224425_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224449_225400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225618_226314_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226330_227743_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227855_229286_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229327_231241_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231559_232126_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232216_233218_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233332_234283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234369_235320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235316_236267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236365_237163_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238112_238523_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239544_240288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240331_241375_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241545_243648_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_077068984.1|245058_246015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246033_246525_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246521_247877_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247877_248576_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248572_249274_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249526_250576_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250681_251623_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251619_253509_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253595_254234_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254376_255762_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255692_256229_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256380_257772_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257788_258769_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258904_259888_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259952_260852_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260958_262713_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262720_263845_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263858_264839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265569_266520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267079_267625_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267750_269328_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269343_270498_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270511_270637_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270633_272385_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272381_274061_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274123_274672_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275814_276093_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277136_278087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278363_278525_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279191_279641_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279650_280262_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280420_281269_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281294_282677_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282741_283383_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283522_283981_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284005_284782_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284835_285972_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285968_286919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287016_287643_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287665_288592_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288600_290187_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290183_291188_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291387_292248_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292279_293281_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293351_294161_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294238_296098_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296226_297429_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297542_298424_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299926_300487_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300546_301497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301688_301976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302064_303015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	390851	448360	4107596	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390851_391802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391938_392856_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392852_393101_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393097_394303_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394375_395371_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395393_396614_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396610_397255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398985_399795_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400099_401053_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401151_402135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402061_402763_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402811_403582_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403578_404757_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404924_406631_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406627_407524_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407564_409154_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409203_410196_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410264_410864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411324_412305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412380_413331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413419_414334_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414330_414990_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415079_416003_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416008_416464_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416460_417564_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417522_417792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417751_419371_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419367_420426_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420555_421050_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421142_422120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422315_423521_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423517_425029_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425044_426358_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426548_426728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427137_427872_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430316_431267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431398_431797_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432207_432678_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432766_433111_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433210_434611_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436399_436918_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437028_437784_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437979_439212_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439204_439990_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440056_441028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441038_442016_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442141_443314_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443340_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444434_445628_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447409_448360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	590594	651785	4107596	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590594_591545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592020_592911_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592907_593729_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593928_594420_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594438_595512_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595558_596662_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596737_597358_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597378_597888_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597942_598194_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598257_599391_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599398_599785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599781_602301_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602729_603068_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603064_603571_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603632_604433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604543_605485_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605578_607114_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608793_610644_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610647_611481_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611480_612422_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612673_613645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613786_616075_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616381_617290_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617344_618310_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618384_620046_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620117_620828_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620976_621927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622625_623009_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623066_623669_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623686_624088_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624203_625115_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625111_625693_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626487_627222_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627262_628312_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628459_629038_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629424_630402_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630495_634890_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635090_635939_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636097_636910_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636965_637916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638014_638815_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638876_639260_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639271_640624_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640911_641241_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641243_641993_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642175_643096_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|643142_643355_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643377_643800_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643816_644917_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645013_646531_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646606_647446_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647467_648340_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648430_649525_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649818_650769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650843_651785_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	657109	703300	4107596	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657109_658135_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658175_658415_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658484_660074_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660073_660622_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660702_661275_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661293_662205_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662278_663247_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663369_664443_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664447_666268_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666344_667295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667383_667719_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667852_668503_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668524_669943_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670012_670768_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670736_671495_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671505_672387_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672403_673111_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673113_673872_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674081_675824_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675816_676341_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676380_677175_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677342_678416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678514_679465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679716_679923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679994_680606_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681160_681412_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681404_682094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682350_683301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683940_684426_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684412_685690_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685692_687111_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687139_688195_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688200_688443_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688565_689168_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689596_690547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691221_691473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691535_692018_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692031_692220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692219_692615_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692611_693010_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693006_693429_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693436_693937_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694191_694710_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694719_695049_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695066_695357_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695382_697995_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698004_698364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698431_698965_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698961_699351_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699343_703300_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 6
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	709466	763396	4107596	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709466_711197_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711249_711678_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711680_712361_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712360_712819_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712855_713830_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713846_715163_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715194_715692_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715778_716468_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716467_717517_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717513_718308_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718476_718827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718802_719360_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720489_721440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723577_724807_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724809_726252_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726356_727502_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727533_728331_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728355_729915_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729911_732284_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732393_733497_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733496_734189_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734332_735034_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735018_735396_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736127_737078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737237_738110_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738450_738669_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738708_740088_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740129_741527_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741566_743219_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743222_744107_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744106_745048_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745126_746746_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746912_747728_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747795_748365_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748365_749316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749970_751068_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751101_752367_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752524_753475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753718_754309_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754324_756769_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756888_757860_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757991_758516_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758475_759426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759647_761843_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761915_762323_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762445_763396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	885985	953961	4107596	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885985_887002_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887198_888182_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889780_891169_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891199_892189_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892299_893532_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893813_894614_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894636_896868_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897655_898102_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898123_898870_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899013_899991_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900624_901236_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901229_902447_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902587_903538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903534_904254_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904374_906534_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906624_906894_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906982_907189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907187_907715_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907733_908513_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908680_909697_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909769_910261_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910271_911987_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|913150_914101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914097_915930_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916328_916988_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917515_918196_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918477_919194_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919208_920510_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922654_925543_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925766_927119_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|927147_927669_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927665_929120_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|929154_929403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929508_930384_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930409_931465_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931477_932269_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932301_933672_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934848_935799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935851_936073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936232_936445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936564_937683_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937779_937995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938188_938440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938552_939503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939499_939883_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939937_941752_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941901_942729_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942774_943755_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943751_943964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943960_945142_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945305_946040_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946041_948654_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948789_950703_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951318_951729_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951826_952912_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953010_953961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	997490	1070007	4107596	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997490_998441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998545_999595_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999732_1000749_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002257_1002830_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002889_1003621_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003672_1004590_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005397_1008577_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_077068987.1|1008573_1009956_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010025_1010277_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010422_1011037_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011223_1013284_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013413_1014265_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014261_1014888_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014884_1016639_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016931_1019637_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019649_1021311_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021323_1023114_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023335_1024511_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024553_1025504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025602_1026343_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026537_1028574_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028591_1029602_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029719_1030913_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030942_1031716_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031712_1032903_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032928_1033867_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033863_1036212_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036366_1037008_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038337_1038490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038521_1039070_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039088_1039574_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039751_1040690_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040692_1041010_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041055_1042000_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043680_1044331_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044384_1044720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044716_1045577_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045593_1045875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045948_1046212_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046455_1047406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047704_1048442_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048877_1049201_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049235_1049796_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049916_1050792_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050804_1051752_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051853_1052147_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052173_1054231_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054245_1054746_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054819_1056526_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057389_1058442_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058494_1058884_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058892_1059525_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059624_1060641_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061471_1062479_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062475_1064119_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064115_1065003_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1065143_1065617_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065606_1066629_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066625_1068053_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068990_1070007_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1073760	1135836	4107596	transposase,tRNA,holin	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1073760_1074897_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074893_1075967_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076124_1077561_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077651_1078293_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078628_1079645_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081687_1082638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083840_1085262_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085525_1086242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086326_1086644_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086684_1087098_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087099_1087459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087501_1089046_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089129_1089960_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089994_1091149_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091191_1092064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092180_1094469_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095675_1096140_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096166_1097117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097484_1098261_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098305_1099163_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099184_1100201_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100335_1101376_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101570_1103652_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103887_1105381_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105611_1106406_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106626_1107985_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107981_1108824_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108842_1110729_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110670_1110922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110966_1111599_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111617_1112220_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112371_1113322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113902_1114610_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114968_1115955_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116094_1117108_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117104_1118055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1118167_1118626_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118662_1119976_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119993_1120365_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120361_1121825_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121965_1122694_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122675_1125525_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125737_1126688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126855_1127680_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127679_1128558_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129462_1130578_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130606_1131401_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131397_1133263_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133341_1133974_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133970_1134273_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134315_1135836_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1153406	1219925	4107596	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153406_1155203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155202_1156171_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156240_1157086_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1157153_1157708_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157754_1158705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158803_1159436_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159600_1161883_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162037_1164734_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164859_1165348_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167758_1170629_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170674_1171889_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172118_1173546_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173643_1174735_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174747_1175506_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175593_1176496_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176492_1177443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177572_1178556_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178610_1179333_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180811_1182167_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182247_1184623_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184787_1186863_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186924_1187719_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187826_1188789_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188776_1189532_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189639_1191277_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191344_1192082_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192184_1192760_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192932_1193469_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193501_1193816_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193831_1194677_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194715_1196095_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196172_1197054_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1197152_1198103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198099_1198510_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198617_1199472_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199464_1200427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200472_1201597_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201702_1202581_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202705_1203485_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203638_1205060_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205494_1207192_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207418_1208360_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208686_1209433_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209440_1210367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210488_1211406_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211445_1212399_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212423_1213002_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214675_1215284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215361_1215715_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215798_1216788_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216990_1217941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218027_1218978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218974_1219925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1292888	1329653	4107596	transposase	Salmonella_phage(50.0%)	36	NA	NA
WP_005013747.1|1292888_1293839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294460_1296188_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296299_1297658_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297950_1298901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298941_1300012_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300034_1300913_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301084_1302056_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302218_1303061_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303222_1303903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303896_1305066_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305062_1306094_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1306161_1307379_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307413_1308946_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309026_1309650_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309680_1310292_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310327_1310798_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1310987_1311221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1311228_1312233_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312269_1313784_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313787_1314747_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314775_1315579_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315580_1317215_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317298_1318360_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318558_1318828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318831_1319356_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319771_1320722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320718_1321753_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321861_1322500_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322794_1323022_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1323144_1323858_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324102_1325053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325192_1325438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325552_1327001_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327111_1328062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1328058_1328508_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1328702_1329653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1418295	1470448	4107596	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1418295_1419246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419412_1419766_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419778_1420141_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420182_1420608_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420810_1422067_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422265_1423246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423395_1424637_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424735_1425686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425694_1426390_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429211_1429811_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429821_1431987_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432010_1433795_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433794_1433884_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434578_1434851_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434850_1436917_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436913_1437864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437962_1438913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439028_1439361_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439357_1440044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440030_1440990_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441022_1443392_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443391_1444024_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444125_1445466_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445512_1446868_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1447158_1447395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447582_1447900_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448172_1448688_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448958_1449714_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450052_1450259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450266_1450926_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451220_1453425_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453535_1454759_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454881_1455856_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455923_1457117_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1457131_1457932_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457928_1459785_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459781_1460387_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460405_1461791_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462516_1463743_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463831_1464614_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464712_1465663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465689_1466463_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466474_1467716_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469497_1470448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1514373	1582459	4107596	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514373_1514862_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514979_1515558_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515663_1516032_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1516130_1517081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517087_1518200_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518886_1520089_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520292_1522953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522965_1526370_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527037_1529263_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529309_1529636_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529686_1530295_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530393_1531344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531413_1532178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532174_1532711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532877_1533729_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533788_1534415_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534411_1535362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535460_1536573_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536562_1537564_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537669_1539181_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539177_1540482_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540593_1541154_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541421_1541976_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542431_1542647_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542901_1545499_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545495_1546683_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547341_1547956_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548044_1549166_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549183_1550089_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550981_1551932_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552113_1552866_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552934_1553594_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553590_1554319_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554331_1556611_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556635_1556839_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556880_1557513_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557648_1558566_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558562_1559276_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559513_1560284_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560288_1560888_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561132_1562623_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562681_1562966_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563531_1564458_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564594_1565335_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565501_1566878_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567059_1567965_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569616_1571419_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571536_1572187_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572285_1573236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573257_1574478_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574663_1576076_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1576139_1577207_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577206_1578694_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578703_1579648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579807_1580506_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580583_1581489_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581508_1582459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1618408	1673999	4107596	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618408_1619359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619417_1620191_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620183_1621740_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621736_1622687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624013_1624616_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624855_1625557_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625550_1626333_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626517_1627468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627566_1628304_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628493_1629252_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629298_1630288_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630465_1631434_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632973_1633942_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633950_1634892_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635365_1636376_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636366_1637881_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637877_1639224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639226_1640261_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640310_1641936_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642488_1643439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643543_1644491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644544_1646359_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646351_1647026_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647155_1650230_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650243_1650543_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650857_1651481_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651724_1652594_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652571_1653516_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653601_1654528_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654640_1655420_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655410_1656607_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656637_1657588_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657809_1658499_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658563_1659319_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659370_1660363_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660372_1661326_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661441_1662404_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663805_1664234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664230_1665181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665474_1666197_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666635_1667823_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667826_1668177_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669926_1670898_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670911_1671625_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671629_1672547_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672653_1672950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673048_1673999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1831766	1891036	4107596	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831766_1832717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832841_1833651_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833851_1834802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836075_1837293_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838349_1839252_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839328_1840201_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840331_1840700_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840757_1841804_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841999_1843256_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843260_1844598_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844747_1845704_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845806_1846739_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846854_1847175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847167_1847527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847574_1849149_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849201_1850146_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850163_1850994_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850986_1852621_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852617_1853973_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854879_1856457_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856460_1857735_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857832_1858207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859922_1861056_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861093_1861699_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861695_1862514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862585_1865210_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865196_1865451_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865517_1866099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866402_1866663_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866828_1867452_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867451_1868225_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868221_1869430_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869455_1869929_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870002_1870953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871051_1872002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872100_1873450_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874215_1874971_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875063_1877946_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878268_1878694_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878721_1879870_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879866_1880373_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880388_1881675_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881724_1883020_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883021_1883660_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883665_1884823_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884849_1886205_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886208_1887279_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887417_1887654_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887741_1888848_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888813_1890118_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890136_1891036_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	1901276	1945599	4107596	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901276_1902227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902325_1903276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903475_1904561_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904576_1905338_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905334_1906258_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906356_1906881_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906889_1907633_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907728_1907968_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907981_1908134_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908219_1909710_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909801_1910740_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910736_1910913_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910915_1911578_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913199_1913343_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913339_1914314_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914480_1915431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915427_1916702_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916805_1917999_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917995_1918649_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918645_1920082_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920069_1920429_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921243_1921384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921401_1922352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923397_1925263_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925520_1927041_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1927128_1927779_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928727_1930023_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930044_1930929_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931027_1931903_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931892_1932249_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932379_1933354_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933483_1933663_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933760_1934285_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934295_1935132_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935244_1935616_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935612_1936164_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936179_1937871_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937919_1938600_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938847_1939312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939481_1940411_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940423_1941071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1941144_1942962_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943045_1943996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944648_1945599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	2171267	2220919	4107596	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171267_2172218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172316_2174311_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174370_2175336_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175325_2178187_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178189_2178696_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178800_2180009_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180010_2180949_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181110_2181584_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181580_2182531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182641_2183082_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183210_2184440_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184478_2185300_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185353_2186505_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186596_2187085_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189635_2192185_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192255_2194829_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195094_2195295_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195326_2195488_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195545_2195884_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196032_2196983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197756_2198425_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198406_2200362_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200604_2201354_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201366_2202230_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202233_2203649_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203782_2204511_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204649_2204850_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205025_2205424_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205447_2206848_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206966_2207719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208007_2208685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208711_2209491_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209487_2210372_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210389_2211169_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2211153_2211912_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212049_2212685_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212952_2213969_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214066_2215107_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215241_2216534_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217893_2218277_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218294_2218882_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218919_2219870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219968_2220919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	2578796	2645296	4107596	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578796_2579747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2580116_2580689_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580691_2581702_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581694_2582195_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582205_2582547_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2582615_2583350_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583366_2583636_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583658_2584447_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584493_2585510_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585726_2587169_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587347_2588967_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2589087_2590908_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590986_2592519_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2592552_2594199_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594268_2595291_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595308_2596442_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596444_2597134_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2597133_2597919_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597962_2598727_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598765_2600187_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600252_2600957_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2601004_2601424_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601436_2601844_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2602027_2602738_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602864_2603155_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603172_2603655_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2608160_2609315_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609620_2610637_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610883_2611672_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611738_2612419_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612415_2613186_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613284_2614235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614290_2615208_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615218_2616397_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616416_2617412_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2619000_2619609_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619596_2620637_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620654_2621617_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621613_2622807_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622803_2623601_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623626_2624613_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624631_2626671_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2626872_2627553_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627566_2628478_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628474_2629053_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629191_2630097_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2630104_2633524_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633511_2636112_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2637067_2637700_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2638093_2638852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2638848_2640051_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640238_2641189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2642096_2643242_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643228_2643984_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2644100_2644280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644345_2645296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	2808901	2863418	4107596	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808901_2809852_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810180_2810786_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810839_2812153_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812227_2812698_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812697_2813486_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813496_2815149_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815236_2816187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817348_2817855_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817851_2818616_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818631_2818916_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818980_2819970_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2820141_2821071_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821042_2821729_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821762_2822308_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822352_2823618_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823614_2824517_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825698_2826643_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826737_2828255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828296_2829925_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830032_2830914_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834026_2834401_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834425_2834764_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834807_2836442_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836480_2837827_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837934_2839356_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839425_2840010_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2840112_2841063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841197_2842304_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842314_2843412_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843556_2844762_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844768_2845290_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845286_2845769_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845774_2846026_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846006_2846492_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846627_2850089_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2850106_2850991_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851000_2851432_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851678_2852182_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852259_2853660_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853734_2854610_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854606_2855614_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856081_2856387_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856477_2857068_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857258_2858275_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858466_2860803_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860885_2861320_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861418_2862369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862467_2863418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	2871443	2928228	4107596	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2871443_2872394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874100_2874367_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875074_2875413_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879965_2880568_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880664_2881954_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882011_2882743_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882739_2883543_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883539_2884628_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884624_2885554_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885702_2886848_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886869_2887820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2888150_2891972_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2892128_2892797_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892801_2894475_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894493_2895813_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895817_2898133_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898188_2900357_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900353_2905534_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905632_2905947_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906174_2906420_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906514_2907033_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2907132_2908338_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908453_2909851_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909967_2910546_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910618_2912010_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912177_2913128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913408_2914029_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914025_2914439_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914435_2915479_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915534_2915723_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915732_2916497_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916587_2917244_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917335_2918094_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2918119_2919721_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919921_2920926_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921026_2921290_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921407_2922184_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922774_2923725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2926108_2927221_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927277_2928228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	2958614	3002305	4107596	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2958614_2959565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959685_2960582_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962859_2965085_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965249_2966338_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966294_2966948_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966995_2967793_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968324_2969275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969355_2970504_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970560_2971511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971609_2971915_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971943_2972378_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972379_2973624_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973620_2974331_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974345_2975257_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975619_2976024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976020_2976479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976485_2977394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977390_2978257_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978243_2979071_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979081_2980209_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981286_2982525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982566_2983829_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983835_2984588_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984639_2984825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985100_2985565_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985596_2986256_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986400_2988509_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988505_2989456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989559_2990180_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990283_2991024_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992158_2993283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993328_2993697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993938_2994889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995924_2996467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996852_2997803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997799_2998708_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998834_2999671_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000183_3001293_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001354_3002305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	3402111	3447183	4107596	transposase,tRNA	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3402111_3403062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403828_3404923_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404915_3406250_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406203_3406887_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406912_3408076_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3408072_3409074_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409073_3409946_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409942_3410692_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410688_3411480_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411476_3412616_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412891_3413677_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413710_3414493_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414496_3414886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416025_3416889_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416924_3418013_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418009_3418960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419313_3422292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423218_3424097_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426045_3426996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426992_3427460_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427502_3428273_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428293_3429094_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429104_3430514_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430608_3431394_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431633_3432650_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432757_3433150_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433287_3433968_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433972_3434944_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435039_3435990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3437494_3438196_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3438195_3439620_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3440689_3442030_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3442145_3443909_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444020_3444899_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445011_3445827_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445830_3446082_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446166_3447183_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	3464927	3517332	4107596	transposase,tRNA	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3464927_3465944_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466039_3466750_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466746_3467736_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467831_3469463_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469465_3470203_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470358_3471231_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471580_3472720_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472716_3473376_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473447_3474080_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474109_3474628_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474638_3475748_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475794_3476649_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476650_3477553_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478775_3479726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481480_3482470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482645_3483434_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483430_3484462_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484480_3485044_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485099_3486620_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486883_3487588_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487595_3488324_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488438_3488813_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488855_3490145_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3490141_3491311_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491307_3492147_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492206_3493142_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493154_3494105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494203_3495166_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495197_3495557_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495681_3496584_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496585_3498358_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498392_3499169_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500492_3501443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3502294_3502615_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3502687_3503569_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3503685_3503928_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3504065_3504536_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3504548_3505088_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3505122_3506664_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3506762_3507668_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3507710_3509111_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3509120_3509543_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3509725_3510610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3510685_3511762_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3512068_3514171_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3514213_3516283_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3516381_3517332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	3534450	3588251	4107596	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3534450_3535401_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535741_3536692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536790_3537741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538037_3538535_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538577_3540353_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540360_3541227_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541233_3541968_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3543137_3543932_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544221_3544812_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544845_3546174_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546248_3547394_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547505_3548504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548466_3548901_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550417_3551302_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551298_3552504_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552500_3553361_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553473_3555264_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555304_3555949_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555970_3556279_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556444_3557731_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3559164_3560115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562066_3563281_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563386_3564376_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564372_3564981_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564993_3565623_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565619_3566240_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566271_3567063_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567914_3568370_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568388_3569315_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569368_3570655_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571585_3572458_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572454_3573405_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573503_3574454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3574558_3574789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3574915_3575305_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3575321_3577703_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3577695_3579072_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3579087_3580083_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3580101_3581094_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3581334_3581895_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3581899_3582226_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3582262_3583075_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3583085_3584168_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3584254_3585529_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3586251_3587202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3587300_3588251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013892	Bordetella pertussis strain J122 chromosome, complete genome	4107596	4006665	4071577	4107596	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4006665_4007151_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007239_4007377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007369_4008350_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008616_4009426_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009465_4010146_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4010139_4010598_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010609_4010972_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011054_4011738_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011793_4012102_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012120_4012435_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012431_4014906_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014913_4016305_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016301_4016487_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016465_4017167_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017163_4017985_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017965_4019090_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019082_4020102_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020307_4021198_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021442_4022234_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022316_4022691_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022668_4024078_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024070_4025453_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025787_4027392_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027469_4028441_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028451_4029378_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029768_4030719_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030888_4032115_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032314_4033181_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033173_4034136_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034236_4035187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035285_4036236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036334_4037285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037281_4038775_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038771_4041879_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041875_4044944_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044940_4046191_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046371_4047124_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047165_4047810_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047818_4048799_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048898_4049642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049724_4050072_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050169_4051012_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051056_4051944_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051970_4052159_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052256_4053714_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053700_4055227_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055245_4055713_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055712_4056735_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056855_4057596_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057650_4058751_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058752_4059943_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060062_4061079_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061397_4062069_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062065_4062974_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063185_4063833_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067693_4068761_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068771_4069581_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069670_4070444_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4070626_4071577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
