The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	34624	79601	4102183	tRNA,transposase	Synechococcus_phage(25.0%)	42	NA	NA
WP_010929584.1|34624_35575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37011_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41317_42211_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43662_44613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59246_60473_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60472_60892_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61075_62017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62440_63415_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63471_64053_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64065_64368_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64486_65545_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65579_66851_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67480_68662_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69083_70034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70127_70442_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71634_73542_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73703_74324_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74355_74937_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75025_75277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75278_76121_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76226_77636_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_041166334.1|78656_79601_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	107424	175246	4102183	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107424_108375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109274_110468_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110549_111179_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111240_111924_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111933_113616_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113903_114251_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114341_114659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114941_115958_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116033_116834_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116830_117706_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117716_119009_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119051_120092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120197_121019_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121119_122070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122167_123073_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123069_123903_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124739_125750_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125746_126136_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127029_128283_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128373_130074_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130500_131148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131146_132586_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132696_132981_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133008_133887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135153_136104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136522_138031_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138777_142740_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142792_143575_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143662_144886_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144869_145802_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145807_146620_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147931_148903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149021_149804_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150570_151551_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151547_152276_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152300_152732_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152833_153709_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153760_154960_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155063_155525_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155630_157028_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157024_157702_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157757_159068_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159079_159778_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159941_160718_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160883_161906_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162134_162770_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|162775_164329_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164887_165838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167281_168184_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168161_168791_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169073_170504_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170537_171167_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171215_172823_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172847_173531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173612_174089_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174295_175246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	178628	236264	4102183	protease,tRNA,transposase	Klosneuvirus(14.29%)	47	NA	NA
WP_010929666.1|178628_180707_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180956_181229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181330_182416_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182419_184324_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184320_187995_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188055_188619_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188626_189049_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189076_189496_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189524_189971_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190097_190595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190749_193020_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193095_194301_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|195451_196087_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196083_196977_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197371_198472_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198553_198928_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198987_201852_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201996_202737_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202806_204018_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204046_205015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205628_206579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206735_207059_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207163_208204_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208209_208989_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209034_209331_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209356_209632_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209688_210333_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210332_211019_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211217_212000_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212050_212776_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212807_214157_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214268_215201_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215658_218454_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219047_221891_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222061_222781_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222819_223368_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223522_224422_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929584.1|224446_225397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225615_226311_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226327_227740_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227852_229283_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229324_231238_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231556_232123_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232213_233215_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233329_234280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234366_235317_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235313_236264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	250678	303012	4102183	protease,tRNA,transposase	Bacillus_phage(25.0%)	45	NA	NA
WP_003814337.1|250678_251620_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251616_253506_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253592_254231_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254373_255759_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255689_256226_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256377_257769_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257785_258766_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258901_259885_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259949_260849_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260955_262710_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262717_263842_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263855_264836_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929712.1|267075_267621_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267746_269324_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269339_270494_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270507_270633_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270629_272381_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272377_274057_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274119_274668_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275810_276089_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277132_278083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278359_278521_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279187_279637_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279646_280258_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280416_281265_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281290_282673_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282737_283379_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283518_283977_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284001_284778_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284831_285968_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285964_286915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287013_287640_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287662_288589_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288597_290184_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290180_291185_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291384_292245_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292276_293278_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293348_294158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294235_296095_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296223_297426_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297539_298421_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299923_300484_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300543_301494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301685_301973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302061_303012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	390848	448357	4102183	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390848_391799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391935_392853_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392849_393098_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393094_394300_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394372_395368_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395390_396611_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396607_397252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398982_399792_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400096_401050_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401148_402132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402058_402760_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402808_403579_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403575_404754_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404921_406628_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406624_407521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407561_409151_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409200_410193_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410261_410861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411321_412302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412377_413328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413416_414331_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414327_414987_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415076_416000_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416005_416461_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416457_417561_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417519_417789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417748_419368_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419364_420423_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420552_421047_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421139_422117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422312_423518_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423514_425026_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425041_426355_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426545_426725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427134_427869_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430313_431264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431395_431794_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432204_432675_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432763_433108_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433207_434608_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436396_436915_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437025_437781_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437976_439209_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439201_439987_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440053_441025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441035_442013_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442138_443311_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443337_444366_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444431_445625_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447406_448357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	589362	650553	4102183	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589362_590313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590788_591679_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591675_592497_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592696_593188_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593206_594280_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594326_595430_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595505_596126_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596146_596656_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596710_596962_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597025_598159_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598166_598553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598549_601069_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601497_601836_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601832_602339_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602400_603201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603311_604253_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604346_605882_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607561_609412_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609415_610249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610248_611190_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611441_612413_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612554_614843_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615149_616058_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616112_617078_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617152_618814_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618885_619596_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619744_620695_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621393_621777_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621834_622437_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622454_622856_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622971_623883_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623879_624461_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625255_625990_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626030_627080_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627227_627806_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628192_629170_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629263_633658_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633858_634707_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634865_635678_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635733_636684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636782_637583_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637644_638028_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638039_639392_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639679_640009_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640011_640761_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640943_641864_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641910_642123_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642145_642568_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642584_643685_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643781_645299_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645374_646214_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646235_647108_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647198_648293_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648586_649537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649611_650553_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	655877	702068	4102183	tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655877_656903_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656943_657183_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657252_658842_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658841_659390_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659470_660043_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660061_660973_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661046_662015_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662137_663211_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663215_665036_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665112_666063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666151_666487_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666620_667271_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667292_668711_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668780_669536_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669504_670263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670273_671155_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671171_671879_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671881_672640_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672849_674592_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674584_675109_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675148_675943_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676110_677184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677282_678233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678484_678691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678762_679374_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679928_680180_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680172_680862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681118_682069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682708_683194_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683180_684458_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684460_685879_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685907_686963_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686968_687211_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687333_687936_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688364_689315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689989_690241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690303_690786_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690799_690988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690987_691383_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691379_691778_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691774_692197_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692204_692705_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692959_693478_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693487_693817_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693834_694125_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694150_696763_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696772_697132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697199_697733_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697729_698119_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698111_702068_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	708234	762164	4102183	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708234_709965_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710017_710446_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710448_711129_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711128_711587_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711623_712598_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712614_713931_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713962_714460_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714546_715236_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715235_716285_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716281_717076_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717244_717595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717570_718128_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719257_720208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722345_723575_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723577_725020_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725124_726270_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726301_727099_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727123_728683_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728679_731052_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731161_732265_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732264_732957_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733100_733802_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733786_734164_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734895_735846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736005_736878_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737218_737437_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737476_738856_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738897_740295_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740334_741987_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741990_742875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742874_743816_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743894_745514_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745680_746496_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746563_747133_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747133_748084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748738_749836_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749869_751135_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751292_752243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752486_753077_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753092_755537_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755656_756628_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756759_757284_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757243_758194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758415_760611_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760683_761091_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761213_762164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	885802	953778	4102183	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885802_886819_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887015_887999_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889597_890986_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891016_892006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892116_893349_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893630_894431_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894453_896685_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897472_897919_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897940_898687_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898830_899808_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900441_901053_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901046_902264_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902404_903355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903351_904071_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904191_906351_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906441_906711_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906799_907006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907004_907532_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907550_908330_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908497_909514_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909586_910078_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910088_911804_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912967_913918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913914_915747_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916145_916805_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917332_918013_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918294_919011_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919025_920327_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922471_925360_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925583_926936_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926964_927486_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927482_928937_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928971_929220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929325_930201_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930226_931282_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931294_932086_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932118_933489_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934665_935616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935668_935890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936049_936262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936381_937500_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937596_937812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938005_938257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938369_939320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939316_939700_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939754_941569_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941718_942546_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942591_943572_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943568_943781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943777_944959_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945122_945857_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945858_948471_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948606_950520_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951135_951546_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951643_952729_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952827_953778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	997307	1069824	4102183	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997307_998258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998362_999412_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999549_1000566_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002074_1002647_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002706_1003438_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003489_1004407_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005214_1008394_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008390_1009773_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009842_1010094_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010239_1010854_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011040_1013101_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013230_1014082_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014078_1014705_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014701_1016456_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016748_1019454_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019466_1021128_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021140_1022931_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023152_1024328_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024370_1025321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025419_1026160_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026354_1028391_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028408_1029419_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029536_1030730_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030759_1031533_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031529_1032720_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032745_1033684_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033680_1036029_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036183_1036825_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038154_1038307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038338_1038887_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038905_1039391_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039568_1040507_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040509_1040827_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040872_1041817_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043497_1044148_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044201_1044537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044533_1045394_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045410_1045692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045765_1046029_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046272_1047223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047521_1048259_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048694_1049018_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049052_1049613_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049733_1050609_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050621_1051569_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051670_1051964_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051990_1054048_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054062_1054563_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054636_1056343_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057206_1058259_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058311_1058701_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058709_1059342_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059441_1060458_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061288_1062296_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062292_1063936_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063932_1064820_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064960_1065434_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065423_1066446_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066442_1067870_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068807_1069824_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	1073577	1135653	4102183	tRNA,holin,transposase	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1073577_1074714_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074710_1075784_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075941_1077378_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077468_1078110_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|1078445_1079462_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023998885.1|1079794_1082533_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_077094131.1|1082523_1083474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083657_1085079_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085342_1086059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086143_1086461_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086501_1086915_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086916_1087276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087318_1088863_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088946_1089777_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089811_1090966_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091008_1091881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091997_1094286_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095492_1095957_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095983_1096934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097301_1098078_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098122_1098980_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099001_1100018_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100152_1101193_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101387_1103469_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103704_1105198_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105428_1106223_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106443_1107802_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107798_1108641_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108659_1110546_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110487_1110739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110783_1111416_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111434_1112037_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112188_1113139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113719_1114427_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114785_1115772_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115911_1116925_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116921_1117872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117984_1118443_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118479_1119793_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119810_1120182_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120178_1121642_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121782_1122511_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122492_1125342_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125554_1126505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126672_1127497_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127496_1128375_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129279_1130395_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130423_1131218_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131214_1133080_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133158_1133791_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133787_1134090_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134132_1135653_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	1316893	1382322	4102183	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1316893_1317844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318612_1319251_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320140_1320587_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320668_1321370_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321370_1322138_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322134_1323373_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323372_1324299_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324401_1325517_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325532_1326483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326836_1327418_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327414_1328248_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328458_1329772_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329948_1330830_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330849_1331701_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331753_1332842_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332952_1334080_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334314_1334926_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335024_1335975_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336196_1336574_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336721_1337219_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337215_1337743_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337876_1338692_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338704_1339886_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339933_1340827_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340953_1341424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341549_1342377_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342405_1343182_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343178_1343454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343468_1343933_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343944_1344646_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344755_1345256_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345338_1346517_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348144_1348480_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348667_1350116_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350173_1350518_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350624_1351164_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351256_1352207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1352305_1353256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353354_1353762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1353994_1354426_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354607_1355012_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356248_1356572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356574_1357462_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357494_1357920_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1357991_1358345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358584_1359091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359129_1360461_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360520_1361336_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361332_1362187_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365249_1367793_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369159_1370914_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370910_1373031_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373035_1375231_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375227_1378569_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381371_1382322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	1490151	1553183	4102183	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|1490151_1491102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491219_1492146_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492211_1493369_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493349_1493817_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493964_1494915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494931_1495366_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495355_1495706_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495902_1497057_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497053_1498226_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498273_1499167_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499212_1499650_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499709_1500399_+	VIT family protein	NA	NA	NA	NA	NA
WP_076879624.1|1501456_1502407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1502505_1503468_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1503694_1504849_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1504859_1508102_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1509123_1509768_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1509778_1510678_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1510725_1511811_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1511807_1513502_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1513680_1514631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247209.1|1514772_1515075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247210.1|1515090_1516143_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003820487.1|1516184_1517246_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_010930369.1|1517279_1518116_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812685.1|1518125_1518668_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930370.1|1518681_1519974_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010930371.1|1519970_1520564_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_004567450.1|1520716_1521814_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_003820494.1|1521820_1522381_+	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|1522377_1523058_+	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_023994978.1|1523114_1525172_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_019248667.1|1525168_1525798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853518.1|1525949_1526159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247523.1|1526173_1529143_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_003812666.1|1529777_1530011_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930376.1|1530023_1531181_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_004567447.1|1531203_1531578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930377.1|1531611_1532727_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930378.1|1533626_1534331_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_004567445.1|1534327_1535146_+	solute-binding protein	NA	NA	NA	NA	NA
WP_010930379.1|1535429_1536833_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_010930380.1|1536847_1537498_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930381.1|1537579_1538656_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930382.1|1538842_1539973_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930383.1|1540143_1541727_+	membrane protein	NA	NA	NA	NA	NA
WP_010930384.1|1541730_1542543_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_014486072.1|1542687_1543782_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930386.1|1543993_1544623_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930388.1|1546306_1546963_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_005012067.1|1547442_1548393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1548419_1549193_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1549204_1550446_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1552232_1553183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	1598157	1666242	4102183	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1598157_1598646_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598763_1599342_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599447_1599816_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599914_1600865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600871_1601984_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602670_1603873_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604076_1606737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606749_1610154_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610821_1613047_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613093_1613420_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613470_1614079_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614177_1615128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615197_1615962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1615958_1616495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616661_1617513_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617572_1618199_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618195_1619146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619244_1620357_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620346_1621348_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621453_1622965_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622961_1624266_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624377_1624938_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625205_1625760_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626215_1626431_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626685_1629283_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629279_1630467_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1631124_1631739_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1631827_1632949_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632966_1633872_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010929591.1|1634764_1635715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635896_1636649_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636717_1637377_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637373_1638102_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638114_1640394_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640418_1640622_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640663_1641296_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641431_1642349_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642345_1643059_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643296_1644067_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644071_1644671_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644915_1646406_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646464_1646749_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1647314_1648241_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648377_1649118_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649284_1650661_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650842_1651748_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653399_1655202_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1655319_1655970_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656068_1657019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1657040_1658261_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1658446_1659859_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1659922_1660990_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1660989_1662477_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1662486_1663431_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1663590_1664289_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1664366_1665272_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1665291_1666242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	1702191	1757782	4102183	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1702191_1703142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1703200_1703974_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1703966_1705523_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1705519_1706470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1707796_1708399_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1708638_1709340_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1709333_1710116_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1710300_1711251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1711349_1712087_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1712276_1713035_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713081_1714071_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1714248_1715217_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1716756_1717725_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1717733_1718675_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1719148_1720159_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1720149_1721664_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1721660_1723007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1723009_1724044_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724093_1725719_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1726271_1727222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1727326_1728274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1728327_1730142_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1730134_1730809_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1730938_1734013_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1734026_1734326_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1734640_1735264_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1735507_1736377_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1736354_1737299_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1737384_1738311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1738423_1739203_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1739193_1740390_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1740420_1741371_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1741592_1742282_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1742346_1743102_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1743153_1744146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1744155_1745109_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1745224_1746187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1747588_1748017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1748013_1748964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1749257_1749980_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1750418_1751606_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1751609_1751960_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1753709_1754681_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1754694_1755408_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1755412_1756330_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1756436_1756733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1756831_1757782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	1779440	1870362	4102183	tRNA,transposase	Brevibacillus_phage(14.29%)	60	NA	NA
WP_014905945.1|1779440_1780391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1780414_1780879_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1781025_1782234_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1782277_1782715_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1782833_1784123_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1786863_1787814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1787912_1788929_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1789107_1790142_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1790138_1790765_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1790761_1791814_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1791863_1792634_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1792684_1793521_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1793716_1794457_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1794531_1795275_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811719.1|1795936_1796710_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_003811716.1|1797847_1799137_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1800747_1801995_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1802004_1803714_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1803710_1804649_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1804645_1805929_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1805932_1806415_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1806415_1807402_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1807574_1808294_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1808410_1809361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1812546_1813896_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1813953_1814748_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1814881_1815757_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1815800_1819517_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1819525_1820155_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_019247159.1|1831428_1831866_+	protein FimA	NA	NA	NA	NA	NA
WP_010930611.1|1832115_1832850_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1832912_1835534_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1835514_1836645_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1836637_1838392_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1839709_1840210_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1840216_1841191_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1842747_1843239_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1843252_1844218_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247163.1|1844238_1844940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1846114_1846627_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1846705_1850329_+	5-oxoprolinase	NA	NA	NA	NA	NA
WP_010930622.1|1850342_1851374_-	peptidase C45	NA	NA	NA	NA	NA
WP_005013747.1|1851478_1852429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809983.1|1852534_1853368_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1853381_1854140_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1854301_1855294_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1855511_1856288_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1856395_1857178_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1857304_1858891_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1858915_1859779_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1859986_1860763_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1860755_1861265_-	cyclophilin	NA	NA	NA	NA	NA
WP_010930629.1|1861393_1862077_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1862316_1863777_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1863796_1864441_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1864477_1865443_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1865541_1866492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|1866552_1867587_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1867686_1868952_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1869345_1870362_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	1990546	2060198	4102183	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1990546_1993204_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1993281_1994484_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1994480_1994993_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1995115_1995553_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1995829_1996780_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1996878_1997829_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1997992_1999888_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2000001_2000169_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2000232_2000469_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2000837_2001989_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2003552_2004503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2004954_2005956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2006128_2006986_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2006982_2008245_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2008345_2008720_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2008792_2009980_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2010064_2010835_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2010948_2011713_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2011663_2012965_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2012961_2013768_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2015512_2016484_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016640_2017153_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2017311_2018286_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2019286_2020081_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2020106_2020913_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2021023_2021614_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2021624_2022803_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2022905_2023280_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2023532_2024864_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2024930_2028161_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2029651_2030398_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2030482_2030944_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2030981_2032040_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2032002_2033832_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2033871_2034444_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2035868_2036690_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2037008_2038331_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2038690_2039326_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2039285_2040236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2041106_2041979_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_077094133.1|2042056_2043196_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2043554_2044811_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2044816_2045344_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2045348_2046167_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2046166_2046889_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2046910_2047225_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2047242_2048391_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2048421_2049297_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2049293_2050613_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2050685_2051882_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2051892_2053380_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2055974_2056874_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057011_2057977_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058075_2059026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2059247_2060198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	2071694	2121089	4102183	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2071694_2072645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2073782_2074079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2074253_2075606_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2075748_2076765_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2078744_2079758_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2079844_2080750_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2080906_2081251_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2081408_2081867_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2081880_2084097_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2084093_2085155_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2085183_2086158_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2086109_2086928_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2086940_2087549_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2087723_2088119_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2088137_2089577_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2089605_2089953_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2089971_2090922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2091573_2092524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2092607_2094425_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2094498_2095146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2095158_2096088_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2096257_2096722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2096969_2097650_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2097698_2099390_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2099405_2099957_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2099953_2100325_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2100437_2101274_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2101284_2101809_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2101906_2102086_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2102215_2103190_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2103320_2103677_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2103666_2104542_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2104640_2105525_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2105546_2106842_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2107790_2108441_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2108528_2110049_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2110306_2112172_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2113217_2114168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2114185_2114326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2115140_2115500_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2115487_2116924_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2116920_2117574_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2117570_2118764_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2118867_2120142_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2120138_2121089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	2132293	2200668	4102183	protease,tRNA,transposase	Klosneuvirus(25.0%)	58	NA	NA
WP_005013747.1|2132293_2133244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2133203_2133617_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2133901_2134201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2134610_2136893_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2137358_2137553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006218592.1|2139627_2139840_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2140117_2140657_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2140770_2142066_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2142142_2143300_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2143483_2144383_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2144401_2145706_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2145671_2146778_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2146865_2147102_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2147240_2148311_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2148314_2149670_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2149696_2150854_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2150859_2151498_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2151499_2152795_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2152844_2154131_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2154146_2154653_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2154649_2155798_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2155825_2156251_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2156573_2159456_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2159548_2160304_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2161069_2162419_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2162517_2163468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2163566_2164517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2164590_2165064_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2165089_2166298_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2166294_2167068_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2167067_2167691_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2167856_2168117_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2168420_2169002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2169068_2169323_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2169309_2171934_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2172005_2172824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2172820_2173426_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2173463_2174597_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2176312_2176687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2176784_2178059_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2178062_2179640_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2180546_2181902_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2181898_2183533_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2183525_2184356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2184373_2185318_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2185370_2186945_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2186992_2187352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2187344_2187665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077094134.1|2187780_2188713_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2188815_2189772_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2189921_2191259_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2191263_2192520_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2192715_2193762_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2193819_2194188_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2194318_2195191_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2195267_2196170_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2197226_2198444_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2199717_2200668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	2254002	2311280	4102183	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2254002_2254953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2255051_2257046_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2257105_2258071_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2258060_2260922_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2260924_2261431_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2261535_2262744_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2262745_2263684_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2263845_2264319_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2264315_2265266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2265376_2265817_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2265945_2267175_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2267213_2268035_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2268088_2269240_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2269331_2269820_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2272370_2274920_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2274990_2277564_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2277829_2278030_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2278061_2278223_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2278280_2278619_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2278767_2279718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2280491_2281160_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2281141_2283097_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2283339_2284089_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2284101_2284965_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2284968_2286384_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2286517_2287246_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2287384_2287585_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2287760_2288159_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2288182_2289583_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2289701_2290454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2290742_2291420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2291446_2292226_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2292222_2293107_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2293124_2293904_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2293888_2294647_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2294784_2295420_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2295687_2296704_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2296801_2297842_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2297976_2299269_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2300628_2301012_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2301029_2301617_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2301654_2302605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2302703_2303264_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2303260_2303806_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2304001_2305030_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2305070_2306411_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2306519_2307524_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2307630_2310231_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2310329_2311280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	2533068	2598789	4102183	protease,tRNA,transposase	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2533068_2535012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2535008_2535929_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2535948_2536536_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2536528_2537419_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2537415_2538177_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2538182_2539067_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2539089_2540883_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2541013_2542501_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2542538_2543597_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2543596_2544097_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2544109_2544709_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2544705_2545206_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2545207_2546437_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2546626_2546866_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2547048_2547801_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2547802_2548738_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2548819_2549806_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2549805_2550864_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2550920_2551103_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2551154_2551748_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2551856_2552456_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2552452_2553163_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2553164_2553992_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2555808_2557050_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557061_2557835_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2557861_2558812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2558910_2559693_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2559781_2561008_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2561733_2563119_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563137_2563743_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2563739_2565596_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565592_2566393_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566407_2567601_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567668_2568643_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2568765_2569989_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570099_2572304_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572598_2573258_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573265_2573472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2573810_2574566_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2574836_2575352_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575624_2575942_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2576129_2576366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576656_2578012_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2578058_2579399_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579500_2580133_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2580132_2582502_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582534_2583494_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583480_2584167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584163_2584496_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2584611_2585562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2585660_2586611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2586607_2588674_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2588673_2588946_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2589640_2589730_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2589729_2591514_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2591537_2593703_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2593713_2594313_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2597134_2597830_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2597838_2598789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	2781037	2853907	4102183	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781037_2781454_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781564_2782197_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782225_2782669_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782690_2783782_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783836_2784637_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784772_2785393_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785532_2786006_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787145_2788096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788092_2795754_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2795994_2800041_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800353_2800935_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800931_2802230_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802309_2803338_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803598_2804549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804545_2805496_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805812_2806418_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806471_2807785_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807859_2808330_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808329_2809118_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809128_2810781_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810868_2811819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812980_2813487_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813483_2814248_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814263_2814548_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814612_2815602_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815773_2816703_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816674_2817361_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817394_2817940_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2817984_2819250_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819246_2820149_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821330_2822275_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822369_2823887_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823928_2825557_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825664_2826546_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829658_2830033_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830057_2830396_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830439_2832074_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832112_2833459_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833566_2834988_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835057_2835642_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835744_2836695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836829_2837936_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837946_2839044_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839188_2840394_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840400_2840922_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840918_2841401_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841406_2841658_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841638_2842124_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842259_2845721_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845738_2846623_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846632_2847064_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847310_2847814_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847891_2849292_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849366_2850242_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850238_2851246_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851713_2852019_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852109_2852700_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852890_2853907_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	2857050	2923860	4102183	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2857050_2858001_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858099_2859050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859046_2859841_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859872_2860577_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860651_2861452_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861448_2861856_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861852_2862494_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862486_2864487_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865747_2867079_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867075_2868026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869732_2869999_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870706_2871045_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875597_2876200_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876296_2877586_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877643_2878375_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878371_2879175_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879171_2880260_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880256_2881186_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881334_2882480_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882501_2883452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2883782_2887604_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887760_2888429_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888433_2890107_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890125_2891445_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891449_2893765_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893820_2895989_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2895985_2901166_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901264_2901579_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901806_2902052_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902146_2902665_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902764_2903970_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904085_2905483_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905599_2906178_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906250_2907642_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907809_2908760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909040_2909661_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909657_2910071_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910067_2911111_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911166_2911355_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911364_2912129_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912219_2912876_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912967_2913726_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913751_2915353_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915553_2916558_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916658_2916922_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917039_2917816_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918406_2919357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921740_2922853_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2922909_2923860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	2954246	2997937	4102183	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2954246_2955197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2955317_2956214_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958491_2960717_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960881_2961970_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961926_2962580_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962627_2963425_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963956_2964907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2964987_2966136_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966192_2967143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967241_2967547_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967575_2968010_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968011_2969256_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969252_2969963_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969977_2970889_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971251_2971656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971652_2972111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972117_2973026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973022_2973889_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973875_2974703_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974713_2975841_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976918_2978157_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978198_2979461_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979467_2980220_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980271_2980457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980732_2981197_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981228_2981888_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982032_2984141_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984137_2985088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985191_2985812_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2985915_2986656_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987790_2988915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988960_2989329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989570_2990521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991556_2992099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992484_2993435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2993431_2994340_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994466_2995303_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995815_2996925_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2996986_2997937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	3376837	3441770	4102183	tRNA,transposase	Staphylococcus_phage(20.0%)	55	NA	NA
WP_023995489.1|3376837_3377788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378192_3378837_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378861_3379446_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379546_3380164_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380166_3381882_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381878_3382187_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3382203_3382821_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382865_3383168_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383268_3384123_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384310_3384535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384704_3384977_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385394_3385802_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386171_3386966_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387066_3388302_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388370_3389387_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3389398_3390775_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390771_3391968_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391964_3393503_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393499_3394759_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396699_3397650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3398416_3399511_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399503_3400838_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400791_3401475_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401500_3402664_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3402660_3403662_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403661_3404534_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404530_3405280_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405276_3406068_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406064_3407204_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3407479_3408265_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408298_3409081_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409084_3409474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3410613_3411477_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3411512_3412601_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_019247959.1|3413900_3416879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417805_3418684_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420632_3421583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421579_3422047_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3422089_3422860_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3422880_3423681_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423691_3425101_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3425195_3425981_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3426220_3427237_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3427344_3427737_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427874_3428555_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3428559_3429531_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429626_3430577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3432081_3432783_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3432782_3434207_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3435276_3436617_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3436732_3438496_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438607_3439486_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439598_3440414_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3440417_3440669_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3440753_3441770_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	3459514	3511920	4102183	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3459514_3460531_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460626_3461337_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3461333_3462323_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3462418_3464050_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3464052_3464790_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3464945_3465818_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3466167_3467307_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3467303_3467963_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3468034_3468667_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468696_3469215_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3469225_3470335_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3470381_3471236_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3471237_3472140_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3473362_3474313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3476068_3477058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3477233_3478022_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3478018_3479050_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3479068_3479632_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479687_3481208_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481471_3482176_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3482183_3482912_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3483026_3483401_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483443_3484733_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484729_3485899_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3485895_3486735_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486794_3487730_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487742_3488693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488791_3489754_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489785_3490145_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3490269_3491172_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3491173_3492946_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3492980_3493757_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3495080_3496031_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3496882_3497203_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3497275_3498157_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3498273_3498516_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3498653_3499124_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3499136_3499676_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3499710_3501252_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3501350_3502256_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3502298_3503699_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3503708_3504131_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3504313_3505198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3505273_3506350_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3506656_3508759_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3508801_3510871_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3510969_3511920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	3529038	3582839	4102183	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3529038_3529989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3530329_3531280_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3531378_3532329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532625_3533123_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3533165_3534941_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3534948_3535815_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3535821_3536556_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3537725_3538520_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3538809_3539400_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3539433_3540762_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3540836_3541982_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3542093_3543092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3543054_3543489_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3545005_3545890_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545886_3547092_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3547088_3547949_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3548061_3549852_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3549892_3550537_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3550558_3550867_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3551032_3552319_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3553752_3554703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3556654_3557869_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3557974_3558964_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3558960_3559569_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3559581_3560211_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3560207_3560828_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3560859_3561651_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3562502_3562958_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3562976_3563903_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3563956_3565243_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3566173_3567046_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3567042_3567993_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3568091_3569042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3569146_3569377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3569503_3569893_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3569909_3572291_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3572283_3573660_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3573675_3574671_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3574689_3575682_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3575922_3576483_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3576487_3576814_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3576850_3577663_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3577673_3578756_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3578842_3580117_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3580839_3581790_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3581888_3582839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013899	Bordetella pertussis strain J162 chromosome, complete genome	4102183	4001251	4066163	4102183	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4001251_4001737_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4001825_4001963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4001955_4002936_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4003202_4004012_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4004051_4004732_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4004725_4005184_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4005195_4005558_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4005640_4006324_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4006379_4006688_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4006706_4007021_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4007017_4009492_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4009499_4010891_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4010887_4011073_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4011051_4011753_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4011749_4012571_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4012551_4013676_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4013668_4014688_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4014893_4015784_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4016028_4016820_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4016902_4017277_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4017254_4018664_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4018656_4020039_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4020373_4021978_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4022055_4023027_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4023037_4023964_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4024354_4025305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025474_4026701_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026900_4027767_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027759_4028722_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028822_4029773_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029871_4030822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030920_4031871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031867_4033361_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033357_4036465_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036461_4039530_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039526_4040777_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4040957_4041710_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4041751_4042396_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4042404_4043385_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043484_4044228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4044310_4044658_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044755_4045598_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045642_4046530_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046556_4046745_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046842_4048300_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048286_4049813_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049831_4050299_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4050298_4051321_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4051441_4052182_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4052236_4053337_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053338_4054529_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054648_4055665_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4055983_4056655_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056651_4057560_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057771_4058419_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4062279_4063347_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063357_4064167_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064256_4065030_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4065212_4066163_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
