The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	27282	78584	4108659	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	107426	175252	4108659	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132699_132984_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136525_138034_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138780_142743_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142795_143578_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143665_144889_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144872_145805_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145810_146623_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147936_148908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149026_149809_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150575_151556_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151552_152281_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152305_152737_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152838_153714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153765_154965_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155069_155531_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155636_157034_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157030_157708_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157763_159074_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159085_159784_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159947_160724_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160889_161912_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162140_162776_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|162781_164335_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	178634	236270	4108659	tRNA,transposase,protease	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225621_226317_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226333_227746_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227858_229289_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229330_231244_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231562_232129_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232219_233221_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	250684	303020	4108659	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287021_287648_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287670_288597_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288605_290192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290188_291193_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291392_292253_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292284_293286_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293356_294166_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294243_296103_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296231_297434_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297547_298429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299931_300492_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300551_301502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301693_301981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302069_303020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	390856	448365	4108659	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	590599	651791	4108659	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590599_591550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592025_592916_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592912_593734_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593934_594426_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594444_595518_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595564_596668_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596743_597364_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597384_597894_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597948_598200_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598263_599397_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599404_599791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599787_602307_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602735_603074_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603070_603577_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603638_604439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604549_605491_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605584_607120_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608799_610650_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610653_611487_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611486_612428_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612679_613651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613792_616081_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616387_617296_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617350_618316_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618390_620052_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620123_620834_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620800_620965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620982_621933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622631_623015_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623072_623675_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623692_624094_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624209_625121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625117_625699_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626493_627228_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627268_628318_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628465_629044_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629430_630408_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630501_634896_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635096_635945_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636103_636916_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636971_637922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638020_638821_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638882_639266_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639277_640630_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640917_641247_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641249_641999_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642181_643102_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|643148_643361_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643383_643806_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643822_644923_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645019_646537_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646612_647452_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647473_648346_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648436_649531_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649824_650775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650849_651791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	657115	703306	4108659	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657115_658141_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658181_658421_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658490_660080_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660079_660628_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660708_661281_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661299_662211_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662284_663253_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663375_664449_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664453_666274_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666350_667301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667389_667725_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667858_668509_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668530_669949_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670018_670774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670742_671501_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671511_672393_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672409_673117_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673119_673878_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674087_675830_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675822_676347_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676386_677181_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677348_678422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678520_679471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679722_679929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680000_680612_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681166_681418_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681410_682100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682117_682339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682356_683307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683946_684432_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684418_685696_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685698_687117_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687145_688201_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688206_688449_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688571_689174_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689602_690553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691227_691479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691541_692024_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692037_692226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692225_692621_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692617_693016_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693012_693435_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693442_693943_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694197_694716_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694725_695055_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695072_695363_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695388_698001_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698010_698370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698437_698971_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698967_699357_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699349_703306_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	709472	763402	4108659	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709472_711203_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711255_711684_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711686_712367_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712366_712825_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712861_713836_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713852_715169_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715200_715698_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715784_716474_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716473_717523_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717519_718314_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718482_718833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718808_719366_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720495_721446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723583_724813_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724815_726258_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726362_727508_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727539_728337_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728361_729921_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729917_732290_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732399_733503_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733502_734195_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734338_735040_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735024_735402_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736133_737084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737243_738116_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738456_738675_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738714_740094_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740135_741533_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741572_743225_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743228_744113_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744112_745054_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745132_746752_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746918_747734_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747801_748371_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748371_749322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749976_751074_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751107_752373_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752530_753481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753724_754315_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754330_756775_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756894_757866_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757997_758522_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758481_759432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759653_761849_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761921_762329_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762451_763402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	885990	953966	4108659	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885990_887007_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887203_888187_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889785_891174_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891204_892194_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892304_893537_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893818_894619_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894641_896873_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897660_898107_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898128_898875_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899018_899996_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900629_901241_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901234_902452_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902592_903543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903539_904259_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904379_906539_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906629_906899_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906987_907194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907192_907720_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907738_908518_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908685_909702_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909774_910266_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910276_911992_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|913155_914106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914102_915935_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916333_916993_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917520_918201_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918482_919199_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919213_920515_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922659_925548_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925771_927124_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|927152_927674_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927670_929125_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|929159_929408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929513_930389_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930414_931470_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931482_932274_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932306_933677_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934853_935804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935856_936078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936237_936450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936569_937688_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937784_938000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938193_938445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938557_939508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939504_939888_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939942_941757_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941906_942734_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942779_943760_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943756_943969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943965_945147_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945310_946045_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946046_948659_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948794_950708_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951323_951734_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951831_952917_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953015_953966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	997495	1070011	4108659	tRNA,transposase	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|997495_998446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998550_999600_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999737_1000754_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002262_1002835_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002894_1003626_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003677_1004595_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005402_1008582_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010030_1010282_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010427_1011042_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011228_1013289_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013418_1014270_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014266_1014893_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014889_1016644_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016936_1019642_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019654_1021316_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021328_1023119_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023340_1024516_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024558_1025509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025607_1026348_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026542_1028579_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028596_1029607_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029724_1030918_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030947_1031721_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031717_1032908_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032933_1033872_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033868_1036217_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036371_1037013_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038342_1038495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038526_1039075_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039093_1039579_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039756_1040695_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040697_1041015_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041060_1042005_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043685_1044336_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044389_1044725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044721_1045582_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045598_1045880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045953_1046217_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046460_1047411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047709_1048447_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048882_1049206_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049240_1049801_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049920_1050796_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050808_1051756_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051857_1052151_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052177_1054235_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054249_1054750_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054823_1056530_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057393_1058446_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058498_1058888_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058896_1059529_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059628_1060645_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061475_1062483_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062479_1064123_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064119_1065007_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1065147_1065621_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065610_1066633_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066629_1068057_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068994_1070011_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1073764	1135840	4108659	holin,tRNA,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073764_1074901_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074897_1075971_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076128_1077565_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077655_1078297_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078632_1079649_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081691_1082642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083844_1085266_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085529_1086246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086330_1086648_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086688_1087102_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087103_1087463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087505_1089050_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089133_1089964_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089998_1091153_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091195_1092068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092184_1094473_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095679_1096144_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096170_1097121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1097138_1097276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097488_1098265_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098309_1099167_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099188_1100205_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100339_1101380_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101574_1103656_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103891_1105385_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105615_1106410_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106630_1107989_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107985_1108828_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108846_1110733_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110674_1110926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110970_1111603_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111621_1112224_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112375_1113326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113906_1114614_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114972_1115959_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116098_1117112_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117108_1118059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118076_1118217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1118171_1118630_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118666_1119980_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119997_1120369_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120365_1121829_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121969_1122698_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122679_1125529_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125741_1126692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126859_1127684_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127683_1128562_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129466_1130582_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130610_1131405_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131401_1133267_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133345_1133978_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133974_1134277_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134319_1135840_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1153410	1219928	4108659	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153410_1155207_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155206_1156175_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156244_1157090_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1157157_1157712_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157758_1158709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158807_1159440_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159604_1161887_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162041_1164738_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164863_1165352_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167762_1170633_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170678_1171893_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172122_1173550_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173647_1174739_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174751_1175510_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175597_1176500_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176496_1177447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177576_1178560_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178614_1179337_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180815_1182171_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182251_1184627_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184791_1186867_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186928_1187723_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187830_1188793_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188780_1189536_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189643_1191281_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191348_1192086_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192188_1192764_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192936_1193473_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193505_1193820_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193835_1194681_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194719_1196099_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196176_1197058_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1197156_1198107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198103_1198514_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198621_1199476_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199468_1200431_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200476_1201601_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201706_1202585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202709_1203489_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203641_1205063_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205497_1207195_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207421_1208363_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208689_1209436_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209443_1210370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210491_1211409_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211448_1212402_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212426_1213005_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214678_1215287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215364_1215718_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215801_1216791_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216787_1216976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216993_1217944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218030_1218981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218977_1219928_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1270856	1328067	4108659	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270856_1271807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275553_1276165_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276387_1277848_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277944_1279537_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279890_1280148_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1280149_1281490_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281585_1282275_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282287_1283718_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285442_1286264_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286274_1287846_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287874_1288852_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288878_1289682_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289678_1290473_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290480_1291716_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291729_1292143_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292892_1293843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294464_1296192_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296303_1297662_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297718_1297937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297954_1298905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298945_1300016_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300038_1300917_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301088_1302060_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302222_1303065_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303226_1303907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303900_1305070_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305066_1306098_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1306165_1307383_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307417_1308950_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309030_1309654_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309684_1310296_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310331_1310802_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311233_1312238_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312274_1313789_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313792_1314752_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314780_1315584_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315585_1317220_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317303_1318365_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318563_1318833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318836_1319361_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319776_1320727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320723_1321758_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321866_1322505_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322799_1323027_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1323149_1323863_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324107_1325058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325197_1325443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325557_1327006_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327116_1328067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1418299	1470452	4108659	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418299_1419250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419267_1419420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419416_1419770_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419782_1420145_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420186_1420612_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420814_1422071_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422269_1423250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423399_1424641_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424739_1425690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425698_1426394_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429215_1429815_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429825_1431991_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432014_1433799_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433798_1433888_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434582_1434855_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434854_1436921_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436917_1437868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437966_1438917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439032_1439365_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439361_1440048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440034_1440994_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441026_1443396_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443395_1444028_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444129_1445470_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445516_1446872_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1447162_1447399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447586_1447904_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448176_1448692_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448962_1449718_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450056_1450263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450270_1450930_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451224_1453429_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453539_1454763_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454885_1455860_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455927_1457121_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1457135_1457936_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457932_1459789_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459785_1460391_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460409_1461795_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462520_1463747_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463835_1464618_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464716_1465667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465693_1466467_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466478_1467720_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469501_1470452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1514377	1582464	4108659	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514377_1514866_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514983_1515562_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515667_1516036_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1516134_1517085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517091_1518204_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518890_1520093_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520296_1522957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522969_1526374_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527041_1529267_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529313_1529640_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529690_1530299_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530397_1531348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531417_1532182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532178_1532715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532881_1533733_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533792_1534419_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534415_1535366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535464_1536577_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536566_1537568_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537673_1539185_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539181_1540486_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540597_1541158_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541425_1541980_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542435_1542651_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542905_1545503_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545499_1546687_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547346_1547961_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548049_1549171_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549188_1550094_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550986_1551937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552118_1552871_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552939_1553599_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553595_1554324_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554336_1556616_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556640_1556844_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556885_1557518_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557653_1558571_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558567_1559281_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559518_1560289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560293_1560893_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561137_1562628_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562686_1562971_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563536_1564463_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564599_1565340_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565506_1566883_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567064_1567970_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569621_1571424_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571541_1572192_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572290_1573241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573262_1574483_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574668_1576081_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1576144_1577212_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577211_1578699_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578708_1579653_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579812_1580511_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580588_1581494_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581513_1582464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1618413	1682250	4108659	transposase	Brazilian_cedratvirus(25.0%)	53	NA	NA
WP_005013747.1|1618413_1619364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619422_1620196_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620188_1621745_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621741_1622692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624018_1624621_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624860_1625562_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625555_1626338_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626522_1627473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627571_1628309_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628498_1629257_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629303_1630293_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630470_1631439_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632978_1633947_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633955_1634897_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635370_1636381_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636371_1637886_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637882_1639229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639231_1640266_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640315_1641941_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642493_1643444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643548_1644496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644549_1646364_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646356_1647031_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647160_1650235_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650248_1650548_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650862_1651486_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651729_1652599_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652576_1653521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653606_1654533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654645_1655425_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655415_1656612_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656642_1657593_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657814_1658504_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658568_1659324_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659375_1660368_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660377_1661331_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661446_1662409_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663810_1664239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664235_1665186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665479_1666202_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666640_1667828_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667831_1668182_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669931_1670903_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670916_1671630_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671634_1672552_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672658_1672955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930509.1|1675161_1678095_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1678094_1678439_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1678435_1680064_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1680060_1680540_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1680539_1680821_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1680817_1681144_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1681299_1682250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1831770	1891040	4108659	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831770_1832721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832845_1833655_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833855_1834806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836079_1837297_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838353_1839256_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839332_1840205_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840335_1840704_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840761_1841808_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842003_1843260_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843264_1844602_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844751_1845708_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845810_1846743_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846858_1847179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847171_1847531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847578_1849153_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849205_1850150_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850167_1850998_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850990_1852625_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852621_1853977_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854883_1856461_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856464_1857739_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857836_1858211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859926_1861060_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861097_1861703_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861699_1862518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862589_1865214_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865200_1865455_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865521_1866103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866406_1866667_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866832_1867456_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867455_1868229_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868225_1869434_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869459_1869933_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870006_1870957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871055_1872006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872104_1873454_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874219_1874975_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875067_1877950_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878272_1878698_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878725_1879874_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879870_1880377_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880392_1881679_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881728_1883024_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883025_1883664_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883669_1884827_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884853_1886209_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886212_1887283_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887421_1887658_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887745_1888852_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888817_1890122_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890140_1891040_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1901280	1958777	4108659	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|1901280_1902231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902329_1903280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903479_1904565_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904580_1905342_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905338_1906262_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906360_1906885_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906893_1907637_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907732_1907972_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907985_1908138_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908223_1909714_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909805_1910744_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910740_1910917_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910919_1911582_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913203_1913347_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913343_1914318_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914212_1914467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914484_1915435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915431_1916706_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916809_1918003_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917999_1918653_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918649_1920086_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920073_1920433_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921247_1921388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1922352_1924218_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924475_1925996_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926083_1926734_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927682_1928978_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928999_1929884_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929982_1930858_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930847_1931204_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931334_1932309_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932438_1932618_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932715_1933240_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933250_1934087_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934199_1934571_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934567_1935119_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1935134_1936826_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936874_1937555_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937802_1938267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938436_1939366_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939378_1940026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940099_1941917_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942000_1942951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943603_1944554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1944572_1944920_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1944948_1946388_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1946406_1946802_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1946976_1947585_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1947597_1948416_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1948367_1949342_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1949370_1950432_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1950428_1952645_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1952658_1953117_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1953274_1953619_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1953775_1954681_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1954767_1955781_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1957760_1958777_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	1974327	2038696	4108659	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974327_1975278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975499_1976450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976548_1977514_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977651_1978551_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1981145_1982633_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982643_1983840_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983912_1985232_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985228_1986104_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1986134_1987283_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987300_1987615_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987636_1988359_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988358_1989177_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989181_1989709_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989714_1990971_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991329_1992469_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992546_1993419_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994289_1995240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995199_1995835_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996194_1997517_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997835_1998657_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000081_2000654_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000693_2002523_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002485_2003544_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003581_2004043_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004127_2004874_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006364_2009595_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009661_2010993_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011245_2011620_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011722_2012901_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012911_2013502_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013612_2014419_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014444_2015239_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016239_2017214_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017372_2017885_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018041_2019013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020757_2021564_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021560_2022862_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022812_2023577_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023690_2024461_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024545_2025733_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025805_2026180_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026280_2027543_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027539_2028397_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028569_2029571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030022_2030973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032536_2033688_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034056_2034293_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034356_2034524_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034637_2036533_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036696_2037647_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037745_2038696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	2170225	2219878	4108659	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170225_2171176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171274_2173269_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173328_2174294_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174283_2177145_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2177147_2177654_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177758_2178967_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178968_2179907_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180068_2180542_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180538_2181489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181599_2182040_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2182168_2183398_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183436_2184258_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184311_2185463_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185554_2186043_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188593_2191143_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191213_2193787_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194052_2194253_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194284_2194446_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194503_2194842_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194990_2195941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196715_2197384_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197365_2199321_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199563_2200313_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200325_2201189_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201192_2202608_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202741_2203470_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203608_2203809_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203984_2204383_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204406_2205807_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205925_2206678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206966_2207644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207670_2208450_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208446_2209331_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209348_2210128_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210112_2210871_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211008_2211644_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211911_2212928_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213025_2214066_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214200_2215493_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216852_2217236_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217253_2217841_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217878_2218829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218927_2219878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	2510997	2549587	4108659	transposase,protease	Planktothrix_phage(14.29%)	36	NA	NA
WP_005012808.1|2510997_2511948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511965_2512130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2512126_2513821_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513817_2514903_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514950_2515850_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515860_2516505_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517526_2520769_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520779_2521934_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2522160_2523123_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523221_2524172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524270_2525221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525230_2525920_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525979_2526417_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526462_2527356_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527403_2528576_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528572_2529727_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529923_2530274_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530263_2530698_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530714_2531665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531812_2532280_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532260_2533418_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533483_2534410_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534527_2535478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2535512_2535938_-	membrane protein	NA	NA	NA	NA	NA
WP_010930359.1|2536061_2536781_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_010930358.1|2536848_2539212_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930357.1|2539373_2540201_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2540212_2540986_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2540982_2541588_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2541574_2542756_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2542752_2543547_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2543547_2544003_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2544074_2545166_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2545174_2545738_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2545863_2548200_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2548252_2549587_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 23
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	2577756	2644256	4108659	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577756_2578707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579076_2579649_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579651_2580662_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580654_2581155_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2581165_2581507_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581575_2582310_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582326_2582596_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582618_2583407_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583453_2584470_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584686_2586129_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586307_2587927_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2588047_2589868_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589946_2591479_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591512_2593159_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593228_2594251_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594268_2595402_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595404_2596094_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596093_2596879_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596922_2597687_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597725_2599147_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599212_2599917_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599964_2600384_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600396_2600804_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600987_2601698_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601824_2602115_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2602132_2602615_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2607120_2608275_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608580_2609597_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609843_2610632_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610698_2611379_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611375_2612146_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612244_2613195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613250_2614168_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614178_2615357_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615376_2616372_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617960_2618569_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618556_2619597_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619614_2620577_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620573_2621767_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621763_2622561_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622586_2623573_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623591_2625631_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625832_2626513_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626526_2627438_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627434_2628013_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2628151_2629057_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629064_2632484_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632471_2635072_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636027_2636660_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637053_2637812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637808_2639011_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639198_2640149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641056_2642202_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642188_2642944_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643060_2643240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643305_2644256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	2672371	2709783	4108659	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672371_2673322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673420_2674371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674463_2675003_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2675109_2675454_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675511_2676960_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2677147_2677483_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2679110_2680289_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680371_2680872_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680981_2681683_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681694_2682159_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2682173_2682449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682445_2683222_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683250_2684078_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684203_2684674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684800_2685694_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685741_2686923_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686935_2687751_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687884_2688412_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688408_2688906_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2689053_2689431_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689652_2690603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690701_2691313_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691547_2692675_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692785_2693874_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693926_2694778_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694797_2695679_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695855_2697169_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697379_2698213_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698209_2698791_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2699144_2700095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2700110_2701226_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701328_2702255_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702254_2703493_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703489_2704257_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704257_2704959_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2705040_2705487_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2706376_2707015_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707783_2708734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708832_2709783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	2808910	2929287	4108659	transposase,protease	Agrobacterium_phage(16.67%)	97	NA	NA
WP_023853639.1|2808910_2809861_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810189_2810795_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810848_2812162_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812236_2812707_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812706_2813495_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813505_2815158_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815245_2816196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817357_2817864_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817860_2818625_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818640_2818925_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818989_2819979_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2820150_2821080_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821051_2821738_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821771_2822317_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822361_2823627_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823623_2824526_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825707_2826652_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826746_2828264_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828305_2829934_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830041_2830923_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834035_2834410_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834434_2834773_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834816_2836451_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836489_2837836_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837943_2839365_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839434_2840019_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2840121_2841072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2841170_2842121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842255_2843362_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843372_2844470_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844614_2845820_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845826_2846348_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846344_2846827_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846832_2847084_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847064_2847550_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847685_2851147_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851164_2852049_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852058_2852490_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852736_2853240_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853317_2854718_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854792_2855668_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855664_2856672_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2857139_2857445_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857535_2858126_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858316_2859333_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859524_2861861_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861943_2862378_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862476_2863427_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863525_2864476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2864472_2865267_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2865298_2866003_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2866077_2866878_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2866874_2867282_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2867278_2867920_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2867912_2869913_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2871173_2872505_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2872501_2873452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2875158_2875425_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2876132_2876471_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881024_2881627_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881723_2883013_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883070_2883802_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883798_2884602_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884598_2885687_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885683_2886613_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886761_2887907_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887928_2888879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_158322896.1|2888896_2889055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889209_2893031_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893187_2893856_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893860_2895534_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895552_2896872_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896876_2899192_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899247_2901416_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901412_2906593_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906691_2907006_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907233_2907479_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907573_2908092_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908191_2909397_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909512_2910910_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911026_2911605_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911677_2913069_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913236_2914187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914467_2915088_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915084_2915498_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915494_2916538_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916593_2916782_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916791_2917556_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917646_2918303_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918394_2919153_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919178_2920780_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920980_2921985_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922085_2922349_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922466_2923243_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923833_2924784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927167_2928280_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928336_2929287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	2959673	3003364	4108659	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2959673_2960624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960641_2960791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960744_2961641_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963918_2966144_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966308_2967397_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967353_2968007_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968054_2968852_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969383_2970334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970414_2971563_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971619_2972570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972668_2972974_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973002_2973437_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973438_2974683_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974679_2975390_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975404_2976316_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976678_2977083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977079_2977538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977544_2978453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978449_2979316_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979302_2980130_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2980140_2981268_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982345_2983584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983625_2984888_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984894_2985647_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985698_2985884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2986159_2986624_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986655_2987315_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987459_2989568_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989564_2990515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990618_2991239_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991342_2992083_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993217_2994342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994387_2994756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994997_2995948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996983_2997526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997723_2997894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997911_2998862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998858_2999767_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999893_3000730_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001242_3002352_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002413_3003364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	3403171	3448243	4108659	tRNA,transposase	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3403171_3404122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404888_3405983_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405975_3407310_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407263_3407947_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3407972_3409136_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3409132_3410134_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3410133_3411006_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411002_3411752_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411748_3412540_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412536_3413676_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413951_3414737_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414770_3415553_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415556_3415946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417085_3417949_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417984_3419073_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419069_3420020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420373_3423352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424278_3425157_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427105_3428056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428052_3428520_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428562_3429333_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429353_3430154_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430164_3431574_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431668_3432454_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432693_3433710_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433817_3434210_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434347_3435028_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435032_3436004_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436099_3437050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3438554_3439256_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439255_3440680_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3441749_3443090_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443205_3444969_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445080_3445959_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446071_3446887_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446890_3447142_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447226_3448243_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	3465987	3518392	4108659	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3465987_3467004_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467099_3467810_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467806_3468796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468891_3470523_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470525_3471263_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471418_3472291_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472640_3473780_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473776_3474436_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474507_3475140_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475169_3475688_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475698_3476808_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476854_3477709_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477710_3478613_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479835_3480786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482540_3483530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483705_3484494_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484490_3485522_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485540_3486104_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3486159_3487680_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487943_3488648_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488655_3489384_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489498_3489873_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489915_3491205_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491201_3492371_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492367_3493207_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493266_3494202_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494214_3495165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495263_3496226_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496257_3496617_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496741_3497644_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497645_3499418_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499452_3500229_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501552_3502503_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3503354_3503675_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3503747_3504629_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3504745_3504988_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3505125_3505596_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3505608_3506148_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3506182_3507724_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3507822_3508728_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3508770_3510171_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3510180_3510603_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3510785_3511670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3511745_3512822_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3513128_3515231_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3515273_3517343_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3517441_3518392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	3535510	3589311	4108659	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3535510_3536461_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536801_3537752_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537850_3538801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539097_3539595_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539637_3541413_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541420_3542287_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542293_3543028_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544197_3544992_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545281_3545872_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545905_3547234_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547308_3548454_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548565_3549564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549526_3549961_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551477_3552362_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552358_3553564_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553560_3554421_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554533_3556324_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556364_3557009_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557030_3557339_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557504_3558791_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560224_3561175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3563126_3564341_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564446_3565436_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565432_3566041_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566053_3566683_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566679_3567300_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567331_3568123_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568974_3569430_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569448_3570375_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570428_3571715_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572645_3573518_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573514_3574465_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574563_3575514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3575618_3575849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3575975_3576365_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3576381_3578763_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3578755_3580132_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3580147_3581143_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3581161_3582154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3582394_3582955_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3582959_3583286_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3583322_3584135_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3584145_3585228_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3585314_3586589_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3587311_3588262_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3588360_3589311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013900	Bordetella pertussis strain J174 chromosome, complete genome	4108659	4007726	4072638	4108659	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4007726_4008212_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008300_4008438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008430_4009411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009677_4010487_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010526_4011207_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011200_4011659_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011670_4012033_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4012115_4012799_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012854_4013163_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4013181_4013496_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013492_4015967_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015974_4017366_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017362_4017548_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017526_4018228_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018224_4019046_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019026_4020151_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4020143_4021163_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021368_4022259_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022503_4023295_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023377_4023752_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023729_4025139_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4025131_4026514_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026848_4028453_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028530_4029502_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029512_4030439_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030829_4031780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031949_4033176_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033375_4034242_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034234_4035197_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035297_4036248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036346_4037297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037395_4038346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038342_4039836_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039832_4042940_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042936_4046005_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046001_4047252_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047432_4048185_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048226_4048871_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048879_4049860_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049959_4050703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050785_4051133_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051230_4052073_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052117_4053005_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053031_4053220_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053317_4054775_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054761_4056288_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056306_4056774_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056773_4057796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057916_4058657_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058711_4059812_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059813_4061004_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4061123_4062140_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062458_4063130_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4063126_4064035_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064246_4064894_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068754_4069822_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069832_4070642_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4070731_4071505_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4071505_4071670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4071687_4072638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
