The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	0	59497	4110604	transposase,tRNA	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	70134	123122	4110604	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	165943	226454	4110604	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220104_222948_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	234386	298126	4110604	transposase,tRNA	Bacillus_phage(20.0%)	53	NA	NA
WP_010929969.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|279239_280190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|282634_283369_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|283778_283958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|284148_285462_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|285477_286989_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|286985_288191_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|288386_289364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|289456_289951_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|290080_291139_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|291135_292755_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_157734656.1|292714_292984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929784.1|292942_294046_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|294042_294498_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|294503_295427_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|295516_296176_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|296172_297087_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|297175_298126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	379177	431316	4110604	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	50	NA	NA
WP_005013747.1|379177_380128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|380250_380979_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|381075_382254_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|382250_383084_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|383120_383861_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|383980_385156_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|385152_386106_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|386119_386521_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|386513_387119_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|387206_387371_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|387487_388336_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|388332_388986_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|389002_390286_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|390525_392151_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|392244_392646_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|392670_393105_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|393106_394756_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|394796_395966_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|395968_396832_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|400195_400900_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|400893_401688_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|401684_402650_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|402653_403574_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|403670_404834_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|405056_405947_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|405950_406454_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|406496_407495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|407491_408442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|408530_408818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|409009_409960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|410019_410580_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|412082_412964_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|413077_414280_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|414408_416268_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|416345_417155_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|417225_418227_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|418258_419119_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|419318_420323_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|420319_421906_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|421914_422841_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|422863_423490_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|423588_424539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|424535_425672_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|425725_426502_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|426526_426985_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|427124_427766_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|427830_429213_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|429238_430087_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|430245_430857_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|430866_431316_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
>prophage 6
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	592519	653711	4110604	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|592519_593470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|593945_594836_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|594832_595654_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|595854_596346_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|596364_597438_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|597484_598588_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|598663_599284_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|599304_599814_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|599868_600120_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|600183_601317_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|601324_601711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|601707_604227_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|604655_604994_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|604990_605497_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|605558_606359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|606469_607411_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|607504_609040_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|610719_612570_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|612573_613407_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|613406_614348_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|614599_615571_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|615712_618001_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|618307_619216_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|619270_620236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|620310_621972_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|622043_622754_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|622720_622885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|622902_623853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|624551_624935_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|624992_625595_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|625612_626014_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|626129_627041_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|627037_627619_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|628413_629148_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|629188_630238_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|630385_630964_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|631350_632328_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|632421_636816_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|637016_637865_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|638023_638836_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|638891_639842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|639940_640741_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|640802_641186_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|641197_642550_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|642837_643167_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|643169_643919_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|644101_645022_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|645068_645281_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|645303_645726_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|645742_646843_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|646939_648457_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|648532_649372_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|649393_650266_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|650356_651451_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|651744_652695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|652769_653711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	659035	705226	4110604	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|659035_660061_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|660101_660341_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|660410_662000_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|661999_662548_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|662628_663201_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|663219_664131_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|664204_665173_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|665295_666369_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|666373_668194_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|668270_669221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|669309_669645_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|669778_670429_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|670450_671869_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|671938_672694_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|672662_673421_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|673431_674313_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|674329_675037_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|675039_675798_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|676007_677750_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|677742_678267_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|678306_679101_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|679268_680342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|680440_681391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|681642_681849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|681920_682532_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|683086_683338_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|683330_684020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|684037_684259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|684276_685227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|685866_686352_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|686338_687616_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|687618_689037_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|689065_690121_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|690126_690369_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|690491_691094_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691522_692473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|693147_693399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|693461_693944_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|693957_694146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694145_694541_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694537_694936_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694932_695355_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|695362_695863_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696117_696636_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696645_696975_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|696992_697283_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697308_699921_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699930_700290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700357_700891_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700887_701277_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701269_705226_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	711392	765322	4110604	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|711392_713123_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713175_713604_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713606_714287_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714286_714745_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714781_715756_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715772_717089_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717120_717618_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717704_718394_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718393_719443_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719439_720234_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720402_720753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720728_721286_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|722415_723366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725503_726733_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726735_728178_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728282_729428_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729459_730257_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730281_731841_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731837_734210_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734319_735423_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735422_736115_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736258_736960_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736944_737322_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738053_739004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739163_740036_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740376_740595_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740634_742014_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742055_743453_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743492_745145_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745148_746033_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746032_746974_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747052_748672_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748838_749654_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749721_750291_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750291_751242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751896_752994_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753027_754293_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|754450_755401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755644_756235_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756250_758695_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758814_759786_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759917_760442_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760401_761352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761573_763769_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|763841_764249_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|764371_765322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	887911	955887	4110604	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887911_888928_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889124_890108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891706_893095_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893125_894115_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894225_895458_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895739_896540_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896562_898794_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899581_900028_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900049_900796_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900939_901917_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902550_903162_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903155_904373_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904513_905464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905460_906180_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906300_908460_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908550_908820_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908908_909115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909113_909641_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909659_910439_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910606_911623_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911695_912187_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912197_913913_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915076_916027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916023_917856_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918254_918914_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919441_920122_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920403_921120_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921134_922436_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924580_927469_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927692_929045_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929073_929595_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929591_931046_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931080_931329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931434_932310_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932335_933391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933403_934195_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934227_935598_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936774_937725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937777_937999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938158_938371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938490_939609_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939705_939921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940114_940366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940478_941429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941425_941809_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941863_943678_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943827_944655_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944700_945681_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945677_945890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945886_947068_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947231_947966_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947967_950580_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950715_952629_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953244_953655_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953752_954838_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954936_955887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	999416	1071933	4110604	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_010929591.1|999416_1000367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000471_1001521_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1001658_1002675_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004183_1004756_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004815_1005547_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005598_1006516_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007323_1010503_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010499_1011882_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011951_1012203_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012348_1012963_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013149_1015210_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015339_1016191_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016187_1016814_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016810_1018565_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018857_1021563_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021575_1023237_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023249_1025040_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025261_1026437_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_023852617.1|1026479_1027430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027528_1028269_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028463_1030500_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030517_1031528_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031645_1032839_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032868_1033642_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033638_1034829_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034854_1035793_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035789_1038138_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038292_1038934_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040263_1040416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040447_1040996_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041014_1041500_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041677_1042616_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042618_1042936_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042981_1043926_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045606_1046257_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046310_1046646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046642_1047503_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047519_1047801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047874_1048138_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048381_1049332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049630_1050368_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050803_1051127_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051161_1051722_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051842_1052718_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052730_1053678_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053779_1054073_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054099_1056157_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056171_1056672_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056745_1058452_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059315_1060368_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060420_1060810_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060818_1061451_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061550_1062567_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063397_1064405_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064401_1066045_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066041_1066929_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067069_1067543_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067532_1068555_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068551_1069979_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070916_1071933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	1075686	1138810	4110604	transposase,tRNA,holin	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1075686_1076823_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076819_1077893_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078050_1079487_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079577_1080219_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080554_1081571_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083511_1084462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085766_1087188_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087451_1088168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088252_1088570_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088610_1089024_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089025_1089385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089427_1090972_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091055_1091886_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091920_1093075_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093117_1093990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094106_1096395_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097601_1098066_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098092_1099043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099060_1099198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099410_1100187_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_077108134.1|1100231_1101089_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101110_1102127_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102261_1103302_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103496_1105578_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105813_1107307_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107537_1108332_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108552_1109911_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109907_1110750_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110768_1112655_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112596_1112848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112892_1113525_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113543_1114146_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114297_1115248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115828_1116536_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116894_1117881_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118020_1119034_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119030_1119981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1119998_1120139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120093_1120552_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120588_1121902_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121919_1122291_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122287_1123751_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123891_1124620_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124601_1127451_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930184.1|1128780_1129605_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129604_1130483_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1132436_1133552_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1133580_1134375_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1134371_1136237_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1136315_1136948_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1136944_1137247_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1137289_1138810_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	1320052	1388539	4110604	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1320052_1321003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321771_1322410_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1323299_1323746_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1323827_1324529_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324529_1325297_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1325293_1326532_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326531_1327458_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327560_1328676_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328691_1329642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329995_1330577_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330573_1331407_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331617_1332931_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1333107_1333989_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1334008_1334860_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334912_1336001_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1336111_1337239_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1337473_1338085_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1338183_1339134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1339355_1339733_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339880_1340378_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1340374_1340902_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1341035_1341851_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1341863_1343045_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1343092_1343986_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1344112_1344583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344708_1345536_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345564_1346341_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1346337_1346613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346627_1347092_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1347103_1347805_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1347914_1348415_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348497_1349676_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1351303_1351639_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351826_1353275_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1353332_1353677_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353783_1354323_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1354415_1355366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1355383_1355623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356104_1356536_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356717_1357122_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358358_1358682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358684_1359572_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359604_1360030_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360101_1360455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360694_1361201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361239_1362571_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362630_1363446_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363442_1364297_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367359_1369903_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371269_1373024_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373020_1375141_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375145_1377341_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377337_1380679_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383481_1384432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1384497_1384677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384793_1385549_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1385535_1386681_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1387588_1388539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	1449030	1504518	4110604	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449030_1449981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451182_1451629_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451621_1453097_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453093_1453849_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453841_1454852_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454841_1456518_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456830_1457163_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457176_1457572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457581_1457908_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457904_1458231_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458157_1459180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459176_1459527_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459574_1460003_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460010_1461384_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461524_1461902_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462164_1463472_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463532_1464363_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464359_1464848_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464889_1466410_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466453_1466930_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467733_1470331_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470360_1471182_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471908_1472658_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472841_1473720_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473817_1474534_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474548_1475109_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475275_1476040_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476059_1476917_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476913_1478113_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478152_1479487_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479539_1481876_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1482001_1482565_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482573_1483665_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483736_1484192_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484192_1484987_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484983_1486165_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486151_1486757_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486753_1487527_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487538_1488366_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488527_1490891_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490958_1491678_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491801_1492227_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492261_1493212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493329_1494256_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494321_1495479_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495459_1495927_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1496074_1497025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497041_1497476_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497465_1497816_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498012_1499167_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499163_1500336_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500383_1501277_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501322_1501760_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501819_1502509_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502518_1503469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1503567_1504518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	1695446	1759024	4110604	transposase,protease	Klebsiella_phage(11.11%)	49	NA	NA
WP_005012808.1|1695446_1696397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1702875_1705623_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1705643_1706267_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1706278_1706749_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1706760_1707147_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1707208_1707802_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1707792_1708704_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_023853662.1|1708719_1710030_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1710127_1710859_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1711013_1712534_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930859.1|1712594_1713950_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1713984_1715310_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1715491_1716424_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1716434_1717928_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1717924_1718848_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1718850_1720113_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1720132_1721146_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1721218_1721509_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1721538_1722813_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_162268683.1|1722794_1722938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1722955_1723906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1723902_1725540_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1725544_1726384_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023997180.1|1726380_1727388_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1727504_1729079_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1729498_1731043_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1731147_1732215_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1732233_1733820_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1733816_1735007_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1736579_1737068_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1737127_1737985_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1738047_1738998_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1739060_1740050_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1740124_1741006_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1742063_1742915_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1742931_1743501_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1743531_1744395_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1744554_1745631_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1745695_1747393_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1747409_1748240_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1748268_1749291_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1749820_1750771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1750869_1751820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1751816_1753139_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1753239_1753557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1753690_1755004_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1755034_1756672_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1757295_1757772_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1758073_1759024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	1798137	1846152	4110604	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1798137_1799088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1799186_1801787_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1801893_1802898_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1803006_1804347_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1804387_1805416_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1805611_1806157_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1806153_1806714_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1806812_1807763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1807800_1808388_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1808405_1808789_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1810148_1811441_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1811575_1812616_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1812713_1813730_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1813997_1814633_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1814770_1815529_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1815513_1816293_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1816310_1817195_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1817191_1817971_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1817997_1818675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1818963_1819716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1819834_1821235_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1821258_1821657_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1821832_1822033_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1822171_1822900_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1823033_1824449_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1824452_1825316_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1825328_1826078_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1826320_1828276_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1828257_1828926_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1829700_1830651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1830749_1831700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1831848_1832187_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1832244_1832406_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1832437_1832638_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1832903_1835477_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1835547_1838097_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1840647_1841136_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1841227_1842379_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1842432_1843254_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1843292_1844522_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1844650_1845091_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1845201_1846152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	1907713	1966983	4110604	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1907713_1908664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1908788_1909598_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1909798_1910749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1912022_1913240_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1914296_1915199_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1915275_1916148_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1916278_1916647_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1916704_1917751_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1917946_1919203_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1919207_1920545_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1920694_1921651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1921753_1922686_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1922801_1923122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1923114_1923474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1923521_1925096_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1925148_1926093_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1926110_1926941_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1926933_1928568_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1928564_1929920_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1930826_1932404_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1932407_1933682_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1933779_1934154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1935869_1937003_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1937040_1937646_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1937642_1938461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1938532_1941157_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1941143_1941398_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1941464_1942046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1942349_1942610_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1942775_1943399_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1943398_1944172_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1944168_1945377_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1945402_1945876_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1945949_1946900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1946998_1947949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1948047_1949397_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1950162_1950918_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1951010_1953893_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1954215_1954641_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1954668_1955817_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1955813_1956320_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1956335_1957622_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1957671_1958967_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1958968_1959607_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1959612_1960770_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1960796_1962152_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1962155_1963226_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1963364_1963601_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1963688_1964795_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1964760_1966065_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1966083_1966983_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	1977223	2021546	4110604	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1977223_1978174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1978272_1979223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1979422_1980508_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1980523_1981285_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1981281_1982205_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1982303_1982828_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1982836_1983580_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1983675_1983915_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1983928_1984081_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1984166_1985657_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1985748_1986687_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1986683_1986860_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1986862_1987525_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1989146_1989290_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1989286_1990261_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1990155_1990410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1990427_1991378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1991374_1992649_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1992752_1993946_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1993942_1994596_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1994592_1996029_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1996016_1996376_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1997190_1997331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1997348_1998299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1999344_2001210_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2001467_2002988_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2003075_2003726_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2004674_2005970_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2005991_2006876_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2006974_2007850_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2007839_2008196_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2008326_2009301_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2009430_2009610_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2009707_2010232_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2010242_2011079_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2011191_2011563_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2011559_2012111_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2012126_2013818_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2013866_2014547_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2014794_2015259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2015428_2016358_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2016370_2017018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2017091_2018909_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2018992_2019943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2020595_2021546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2034752	2072242	4110604	transposase	Erysipelothrix_phage(100.0%)	35	NA	NA
WP_010930153.1|2034752_2035769_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2035911_2037264_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2037438_2037735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2037833_2038784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2038882_2039833_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|2040318_2040495_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2041179_2042151_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2042154_2043009_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2043027_2043849_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2043880_2044675_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2044723_2045329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2045286_2046120_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2046405_2047911_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2047952_2048735_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2048804_2049251_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2049247_2050474_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2050466_2050871_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2051030_2051333_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|2051329_2052280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2052501_2053452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2053550_2054516_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2054653_2055553_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2058147_2059635_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2059645_2060842_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2060914_2062234_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2062230_2063106_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2063136_2064285_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2064302_2064617_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2064638_2065361_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2065360_2066179_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2066183_2066711_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2066716_2067973_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2068331_2069471_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2069548_2070421_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2071291_2072242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2301117	2362465	4110604	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2301117_2302068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2302184_2302904_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2303076_2304063_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2304063_2304546_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2304549_2305833_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2305829_2306768_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2306764_2308474_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2308483_2309731_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2311341_2312631_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2313768_2314542_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2315203_2315947_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2316021_2316762_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2316957_2317794_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2317844_2318615_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2318664_2319717_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2319713_2320340_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2320336_2321371_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2321549_2322566_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2322664_2323615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2326355_2327645_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2327763_2328201_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2328244_2329453_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2329599_2330064_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2330087_2331038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2332022_2332796_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2332792_2333791_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2333875_2334652_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2334807_2336412_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2336792_2337917_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2338043_2338667_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2338663_2340565_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2340613_2341408_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2341420_2342422_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2342418_2342868_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2342917_2343766_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2343863_2344406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2344449_2345400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2345555_2345882_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2345878_2346160_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2346159_2346639_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2346635_2348264_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2348260_2348605_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2348604_2351538_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2352696_2353647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2353745_2354042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2354148_2355066_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2355070_2355784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2355797_2356769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2358518_2358869_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2358872_2360060_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2360498_2361221_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2361514_2362465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2383256	2454410	4110604	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2383256_2384207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2384759_2386385_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2386434_2387469_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2387471_2388818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2388814_2390329_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2390319_2391330_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2391803_2392745_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2392753_2393722_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2395261_2396230_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2396407_2397397_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2397443_2398202_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2398391_2399129_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010929584.1|2399227_2400178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2400362_2401145_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2401138_2401840_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2402079_2402682_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2404008_2404959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2404955_2406512_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2406504_2407278_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2407336_2408287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2408368_2409544_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2409557_2411615_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2411611_2412637_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2412648_2413938_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2413960_2415058_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2415054_2415945_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2415941_2418026_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2418057_2419227_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2419268_2420009_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2420008_2420779_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2421634_2422420_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2422446_2424531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2424698_2426654_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2426977_2427478_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2427576_2429103_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2429240_2430128_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2430142_2431096_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2431147_2433238_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2433253_2433640_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2436333_2437137_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2438430_2439333_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2439397_2440174_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2440495_2441545_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2441668_2443339_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2443343_2444138_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2444236_2445187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2445206_2446112_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2446189_2446888_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2447047_2447992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2448001_2449489_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2449488_2450556_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2450619_2452032_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2452217_2453438_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2453459_2454410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2539658	2590830	4110604	transposase,tRNA	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2539658_2540609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2540707_2541478_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2541474_2542146_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2542142_2542784_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2542796_2543717_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2543877_2545038_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2545079_2546030_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2546628_2546853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2547017_2548712_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2548833_2549103_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2549218_2549617_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2549627_2550584_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2550720_2551266_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2551286_2553236_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2553623_2554400_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2554405_2554798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2555219_2556170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2556166_2557264_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2557295_2558246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2560027_2561269_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561280_2562054_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562080_2563031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563129_2563912_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2564000_2565227_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565952_2567338_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567356_2567962_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567958_2569815_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569811_2570612_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570626_2571820_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571887_2572862_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572984_2574208_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574318_2576523_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576817_2577477_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577484_2577691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578029_2578785_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2579055_2579571_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579843_2580161_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580348_2580585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580875_2582231_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582277_2583618_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583719_2584352_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584351_2586721_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586753_2587713_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587699_2588386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588382_2588715_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588830_2589781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589879_2590830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2689125	2729794	4110604	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689125_2690076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690186_2690369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690468_2691065_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691248_2692340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692839_2693250_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2693308_2693638_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693655_2696073_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696085_2697108_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697182_2697542_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697557_2697755_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698090_2699041_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699235_2699685_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699681_2700632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700742_2702191_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702305_2702551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702690_2703641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703885_2704599_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704721_2704949_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705243_2705882_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705990_2707025_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707021_2707972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708387_2708912_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708915_2709185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709383_2710445_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710528_2712163_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712164_2712968_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712996_2713956_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713959_2715474_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715510_2716515_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716946_2717417_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717452_2718064_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718094_2718718_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718798_2720331_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2720365_2721583_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721650_2722682_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722678_2723848_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723841_2724522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724683_2725526_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725688_2726660_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726831_2727710_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727732_2728803_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728843_2729794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2785259	2858129	4110604	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785259_2785676_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785786_2786419_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786447_2786891_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786912_2788004_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2788058_2788859_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788994_2789615_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789754_2790228_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791367_2792318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792314_2799976_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800216_2804263_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804575_2805157_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805153_2806452_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806531_2807560_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807820_2808771_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808767_2809718_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810034_2810640_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810693_2812007_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812081_2812552_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812551_2813340_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813350_2815003_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815090_2816041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817202_2817709_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817705_2818470_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818485_2818770_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818834_2819824_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819995_2820925_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820896_2821583_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821616_2822162_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822206_2823472_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823468_2824371_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825552_2826497_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826591_2828109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828150_2829779_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829886_2830768_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833880_2834255_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834279_2834618_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834661_2836296_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836334_2837681_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837788_2839210_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839279_2839864_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839966_2840917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841051_2842158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842168_2843266_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843410_2844616_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844622_2845144_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845140_2845623_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845628_2845880_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845860_2846346_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846481_2849943_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849960_2850845_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850854_2851286_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851532_2852036_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852113_2853514_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853588_2854464_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854460_2855468_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855935_2856241_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856331_2856922_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857112_2858129_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2861272	2928082	4110604	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2861272_2862223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862321_2863272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863268_2864063_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864094_2864799_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864873_2865674_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865670_2866078_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866074_2866716_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866708_2868709_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869969_2871301_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871297_2872248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873954_2874221_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874928_2875267_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879819_2880422_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880518_2881808_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881865_2882597_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882593_2883397_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883393_2884482_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884478_2885408_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885556_2886702_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886723_2887674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887691_2887850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2888004_2891826_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891982_2892651_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892655_2894329_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894347_2895667_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895671_2897987_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898042_2900211_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900207_2905388_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905486_2905801_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906028_2906274_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906368_2906887_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906986_2908192_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908307_2909705_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909821_2910400_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910472_2911864_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912031_2912982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913262_2913883_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913879_2914293_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914289_2915333_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915388_2915577_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915586_2916351_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916441_2917098_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917189_2917948_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917973_2919575_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919775_2920780_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920880_2921144_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921261_2922038_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922628_2923579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925962_2927075_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927131_2928082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	2958468	2997657	4110604	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2958468_2959419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959436_2959586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959539_2960436_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962713_2964939_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965103_2966192_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966148_2966802_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966849_2967647_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968178_2969129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969209_2970358_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970414_2971365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971463_2971769_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971797_2972232_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972233_2973478_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973474_2974185_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974199_2975111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975473_2975878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975874_2976333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976339_2977248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977244_2978111_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978097_2978925_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978935_2980063_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981140_2982379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982420_2983683_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983689_2984442_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984493_2984679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984954_2985419_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985450_2986110_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986254_2988363_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988359_2989310_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989413_2990034_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990137_2990878_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992012_2993137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993182_2993551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993792_2994743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995778_2996321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996518_2996689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996706_2997657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	3383154	3503399	4110604	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3383154_3384105_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384509_3385154_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385178_3385763_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385863_3386481_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386483_3388199_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388195_3388504_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388520_3389138_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389182_3389485_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389585_3390440_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390627_3390852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391021_3391294_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391711_3392119_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392488_3393283_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393383_3394619_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394687_3395704_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395715_3397092_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397088_3398285_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398281_3399820_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399816_3401076_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403016_3403967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404733_3405828_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405820_3407155_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407108_3407792_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407817_3408981_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3408977_3409979_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409978_3410851_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410847_3411597_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411593_3412385_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412381_3413521_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413796_3414582_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414615_3415398_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415401_3415791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416930_3417794_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417829_3418918_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418914_3419865_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420218_3423197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424123_3425002_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425966_3426917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3427999_3428950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428946_3429414_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429456_3430227_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430247_3431048_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431058_3432468_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432562_3433348_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433587_3434604_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434711_3435104_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435241_3435922_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435926_3436898_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436993_3437944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439448_3440150_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3440149_3441574_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442643_3443984_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3444099_3445863_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445974_3446853_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446965_3447781_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447784_3448036_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448120_3449137_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449467_3449689_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452049_3452967_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453464_3454673_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454752_3456324_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456441_3457377_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457565_3458510_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459077_3464795_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464800_3465928_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465983_3466610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466881_3467898_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467993_3468704_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468700_3469690_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469785_3471417_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471419_3472157_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472312_3473185_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473534_3474674_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474670_3475330_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475401_3476034_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476063_3476582_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476592_3477702_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477748_3478603_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478604_3479507_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480729_3481680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483436_3484426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484601_3485390_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485386_3486418_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486436_3487000_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487055_3488576_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488839_3489544_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489551_3490280_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490394_3490769_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490811_3492101_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492097_3493267_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493263_3494103_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494162_3495098_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495110_3496061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496159_3497122_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497153_3497513_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497637_3498540_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498541_3500314_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500348_3501125_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502448_3503399_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	3518337	3576410	4110604	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518337_3519288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519416_3520550_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520593_3521499_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521501_3523202_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523198_3524119_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524126_3525104_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525162_3526197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528171_3528408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528534_3529398_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529486_3530308_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530387_3531125_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531121_3532114_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532266_3532890_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532934_3534083_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536406_3537357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537697_3538648_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538746_3539697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539993_3540491_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540533_3542309_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542316_3543183_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543189_3543924_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545093_3545888_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546177_3546768_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546801_3548130_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548204_3549350_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549461_3550460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550422_3550857_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552373_3553258_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553254_3554460_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554456_3555317_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555429_3557220_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557260_3557905_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557926_3558235_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558400_3559687_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561120_3562071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564022_3565237_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565342_3566332_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566328_3566937_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566949_3567579_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567575_3568196_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568227_3569019_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569870_3570326_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570344_3571271_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571324_3572611_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573541_3574414_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574410_3575361_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575459_3576410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013903	Bordetella pertussis strain J206 chromosome, complete genome	4110604	4009672	4074584	4110604	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009672_4010158_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010246_4010384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010376_4011357_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011623_4012433_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012472_4013153_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013146_4013605_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013616_4013979_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4014061_4014745_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014800_4015109_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015127_4015442_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015438_4017913_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017920_4019312_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019308_4019494_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019472_4020174_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020170_4020992_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020972_4022097_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4022089_4023109_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023314_4024205_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024449_4025241_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025323_4025698_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025675_4027085_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4027077_4028460_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028794_4030399_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030476_4031448_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031458_4032385_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032775_4033726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033895_4035122_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035321_4036188_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036180_4037143_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037243_4038194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038292_4039243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039341_4040292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040288_4041782_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041778_4044886_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044882_4047951_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047947_4049198_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049378_4050131_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050172_4050817_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050825_4051806_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051905_4052649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052731_4053079_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053176_4054019_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054063_4054951_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054977_4055166_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055263_4056721_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056707_4058234_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058252_4058720_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058719_4059742_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059862_4060603_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060657_4061758_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061759_4062950_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063069_4064086_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064404_4065076_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065072_4065981_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066192_4066840_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070700_4071768_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071778_4072588_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072677_4073451_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073451_4073616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073633_4074584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
