The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	27282	70036	4105309	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	77634	136107	4105309	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132699_132984_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	164892	225403	4105309	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	233335	286923	4105309	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	390855	448364	4105309	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417526_417796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	589369	650560	4105309	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589369_590320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590795_591686_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591682_592504_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_077108607.1|596966_598166_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598173_598560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598556_601076_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601504_601843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601839_602346_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602407_603208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603318_604260_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604353_605889_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607568_609419_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609422_610256_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610255_611197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611448_612420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612561_614850_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615156_616065_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616119_617085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617159_618821_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618892_619603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619751_620702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621400_621784_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621841_622444_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622978_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626037_627087_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627234_627813_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635740_636691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636789_637590_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637651_638035_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638046_639399_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640018_640768_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642152_642575_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642591_643692_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643788_645306_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646242_647115_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647205_648300_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648593_649544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	655884	702075	4105309	tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655884_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656950_657190_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661053_662022_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665119_666070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666158_666494_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666627_667278_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667299_668718_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668787_669543_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669511_670270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670280_671162_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671178_671886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671888_672647_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672856_674599_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674591_675116_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675155_675950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676117_677191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677289_678240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678491_678698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678769_679381_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679935_680187_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680179_680869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681125_682076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682715_683201_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683187_684465_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684467_685886_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685914_686970_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686975_687218_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687340_687943_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688371_689322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689996_690248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690310_690793_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690806_690995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690994_691390_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691386_691785_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691781_692204_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692211_692712_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692966_693485_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693494_693824_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693841_694132_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694157_696770_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696779_697139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697206_697740_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697736_698126_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698118_702075_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	708241	762171	4105309	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708241_709972_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710024_710453_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710455_711136_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711135_711594_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711630_712605_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712621_713938_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713969_714467_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714553_715243_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715242_716292_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716288_717083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717251_717602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717577_718135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719264_720215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722352_723582_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723584_725027_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725131_726277_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726308_727106_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727130_728690_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728686_731059_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731168_732272_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732271_732964_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733107_733809_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733793_734171_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734902_735853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736012_736885_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737225_737444_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737483_738863_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738904_740302_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740341_741994_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741997_742882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742881_743823_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743901_745521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745687_746503_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746570_747140_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747140_748091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748745_749843_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749876_751142_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751299_752250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752493_753084_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753099_755544_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755663_756635_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756766_757291_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757250_758201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758422_760618_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760690_761098_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761220_762171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	884759	952735	4105309	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884759_885776_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885972_886956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888554_889943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889973_890963_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891073_892306_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892587_893388_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893410_895642_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896429_896876_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896897_897644_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897787_898765_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899398_900010_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900003_901221_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901361_902312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902308_903028_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903148_905308_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905398_905668_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905756_905963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905961_906489_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906507_907287_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907454_908471_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908543_909035_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909045_910761_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911924_912875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912871_914704_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915102_915762_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916289_916970_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917251_917968_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917982_919284_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921428_924317_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924540_925893_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925921_926443_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926439_927894_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927928_928177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928282_929158_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929183_930239_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930251_931043_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931075_932446_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933622_934573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934625_934847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935006_935219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935338_936457_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936553_936769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936962_937214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937326_938277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938273_938657_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938711_940526_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940675_941503_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941548_942529_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942525_942738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942734_943916_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944079_944814_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944815_947428_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947563_949477_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950092_950503_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950600_951686_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951784_952735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	996264	1068780	4105309	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996264_997215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997319_998369_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998506_999523_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001031_1001604_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001663_1002395_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002446_1003364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004171_1007351_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007347_1008730_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008799_1009051_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009196_1009811_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009996_1012057_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012186_1013038_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013034_1013661_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013657_1015412_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015704_1018410_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018422_1020084_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020096_1021887_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022108_1023284_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023326_1024277_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024375_1025116_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025310_1027347_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027364_1028375_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028492_1029686_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029715_1030489_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030485_1031676_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031701_1032640_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032636_1034985_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035139_1035781_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037110_1037263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037294_1037843_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037861_1038347_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038524_1039463_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039465_1039783_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039828_1040773_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042453_1043104_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043157_1043493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043489_1044350_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044366_1044648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044721_1044985_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045228_1046179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046477_1047215_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047650_1047974_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048008_1048569_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048689_1049565_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049577_1050525_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050626_1050920_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050946_1053004_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053018_1053519_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053592_1055299_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056162_1057215_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057267_1057657_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057665_1058298_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058397_1059414_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060244_1061252_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061248_1062892_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062888_1063776_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063916_1064390_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064379_1065402_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065398_1066826_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067763_1068780_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1072533	1134608	4105309	tRNA,holin,transposase	Catovirus(20.0%)	50	NA	NA
WP_010930155.1|1072533_1073670_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073666_1074740_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074897_1076334_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076424_1077066_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077401_1078418_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080460_1081411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082613_1084035_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084298_1085015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085099_1085417_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085457_1085871_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085872_1086232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086274_1087819_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087902_1088733_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088767_1089922_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089964_1090837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090953_1093242_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094448_1094913_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094939_1095890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096257_1097034_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097078_1097936_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097957_1098974_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099108_1100149_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100343_1102425_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102660_1104154_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104384_1105179_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105399_1106758_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106754_1107597_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107615_1109502_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109443_1109695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109739_1110372_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110390_1110993_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111144_1112095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112675_1113383_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113741_1114728_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114867_1115881_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115877_1116828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116940_1117399_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117435_1118749_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118766_1119138_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119134_1120598_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120738_1121467_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121448_1124298_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930184.1|1125627_1126452_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126451_1127330_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128234_1129350_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129378_1130173_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130169_1132035_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132113_1132746_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132742_1133045_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133087_1134608_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1152178	1218697	4105309	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152178_1153975_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153974_1154943_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155012_1155858_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155925_1156480_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156526_1157477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157575_1158208_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158372_1160655_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160809_1163506_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163631_1164120_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166530_1169401_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169446_1170661_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170890_1172318_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172415_1173507_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173519_1174278_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174365_1175268_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175264_1176215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176344_1177328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177382_1178105_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179583_1180939_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181019_1183395_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183559_1185635_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185696_1186491_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186598_1187561_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187548_1188304_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188411_1190049_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190116_1190854_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190956_1191532_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191704_1192241_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192273_1192588_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192603_1193449_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193487_1194867_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194944_1195826_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195924_1196875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196871_1197282_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197389_1198244_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198236_1199199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199244_1200369_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200474_1201353_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201477_1202257_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202410_1203832_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204266_1205964_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206190_1207132_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207458_1208205_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208212_1209139_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209260_1210178_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210217_1211171_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211195_1211774_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213447_1214056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214133_1214487_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214570_1215560_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215762_1216713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216799_1217750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217746_1218697_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1269625	1326836	4105309	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1269625_1270576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274322_1274934_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275156_1276617_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276713_1278306_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278659_1278917_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278918_1280259_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280354_1281044_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281056_1282487_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284211_1285033_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285043_1286615_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286643_1287621_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287647_1288451_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288447_1289242_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289249_1290485_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290498_1290912_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291661_1292612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293233_1294961_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295072_1296431_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296723_1297674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297714_1298785_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298807_1299686_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299857_1300829_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300991_1301834_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301995_1302676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302669_1303839_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303835_1304867_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304934_1306152_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306186_1307719_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307799_1308423_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308453_1309065_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309100_1309571_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310002_1311007_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311043_1312558_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312561_1313521_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313549_1314353_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314354_1315989_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316072_1317134_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317332_1317602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317605_1318130_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318545_1319496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319492_1320527_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320635_1321274_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321568_1321796_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321918_1322632_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322876_1323827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323966_1324212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324326_1325775_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325885_1326836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1417067	1469220	4105309	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1417067_1418018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418184_1418538_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418550_1418913_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418954_1419380_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419582_1420839_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421037_1422018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422167_1423409_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423507_1424458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424466_1425162_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427983_1428583_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428593_1430759_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430782_1432567_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432566_1432656_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433350_1433623_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433622_1435689_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435685_1436636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436734_1437685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437800_1438133_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438129_1438816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438802_1439762_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439794_1442164_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442163_1442796_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442897_1444238_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444284_1445640_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445930_1446167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446354_1446672_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446944_1447460_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447730_1448486_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448824_1449031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449038_1449698_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449992_1452197_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452307_1453531_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453653_1454628_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454695_1455889_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455903_1456704_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456700_1458557_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458553_1459159_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459177_1460563_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461288_1462515_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462603_1463386_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463484_1464435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464461_1465235_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465246_1466488_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468269_1469220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1513145	1581231	4105309	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1513145_1513634_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513751_1514330_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514435_1514804_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514902_1515853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515859_1516972_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517658_1518861_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519064_1521725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521737_1525142_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525809_1528035_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528081_1528408_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528458_1529067_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529165_1530116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530185_1530950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1530946_1531483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531649_1532501_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532560_1533187_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533183_1534134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534232_1535345_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535334_1536336_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536441_1537953_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537949_1539254_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539365_1539926_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540193_1540748_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541203_1541419_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541673_1544271_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544267_1545455_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1546113_1546728_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1546816_1547938_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547955_1548861_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549753_1550704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550885_1551638_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551706_1552366_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552362_1553091_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553103_1555383_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555407_1555611_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555652_1556285_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556420_1557338_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557334_1558048_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558285_1559056_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559060_1559660_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559904_1561395_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561453_1561738_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1562303_1563230_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563366_1564107_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564273_1565650_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565831_1566737_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568388_1570191_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1570308_1570959_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571057_1572008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572029_1573250_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573435_1574848_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574911_1575979_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575978_1577466_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577475_1578420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578579_1579278_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579355_1580261_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580280_1581231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1617180	1672771	4105309	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617180_1618131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618189_1618963_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618955_1620512_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620508_1621459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622785_1623388_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623627_1624329_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624322_1625105_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625289_1626240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626338_1627076_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627265_1628024_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628070_1629060_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629237_1630206_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631745_1632714_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632722_1633664_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634137_1635148_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635138_1636653_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636649_1637996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1637998_1639033_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639082_1640708_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641260_1642211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642315_1643263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643316_1645131_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645123_1645798_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645927_1649002_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649015_1649315_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649629_1650253_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1650496_1651366_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651343_1652288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652373_1653300_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653412_1654192_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654182_1655379_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655409_1656360_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656581_1657271_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657335_1658091_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658142_1659135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659144_1660098_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660213_1661176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662577_1663006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663002_1663953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1664246_1664969_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665407_1666595_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1666598_1666949_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668698_1669670_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669683_1670397_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670401_1671319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671425_1671722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671820_1672771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1830537	1889807	4105309	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830537_1831488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831612_1832422_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1832622_1833573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834846_1836064_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837120_1838023_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838099_1838972_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839102_1839471_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839528_1840575_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840770_1842027_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842031_1843369_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843518_1844475_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844577_1845510_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845625_1845946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845938_1846298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846345_1847920_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847972_1848917_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848934_1849765_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849757_1851392_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851388_1852744_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853650_1855228_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855231_1856506_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856603_1856978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858693_1859827_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859864_1860470_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860466_1861285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861356_1863981_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863967_1864222_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864288_1864870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865173_1865434_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865599_1866223_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866222_1866996_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1866992_1868201_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868226_1868700_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868773_1869724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869822_1870773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870871_1872221_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872986_1873742_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873834_1876717_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877039_1877465_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877492_1878641_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878637_1879144_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1879159_1880446_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1880495_1881791_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881792_1882431_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1882436_1883594_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883620_1884976_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884979_1886050_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886188_1886425_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886512_1887619_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887584_1888889_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888907_1889807_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1900047	1944370	4105309	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1900047_1900998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901096_1902047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902246_1903332_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903347_1904109_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1904105_1905029_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1905127_1905652_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905660_1906404_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906499_1906739_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906752_1906905_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1906990_1908481_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908572_1909511_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909507_1909684_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909686_1910349_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911970_1912114_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912110_1913085_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1913251_1914202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914198_1915473_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915576_1916770_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916766_1917420_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917416_1918853_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918840_1919200_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920014_1920155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920172_1921123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922168_1924034_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924291_1925812_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925899_1926550_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927498_1928794_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928815_1929700_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929798_1930674_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930663_1931020_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931150_1932125_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932254_1932434_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932531_1933056_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933066_1933903_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934015_1934387_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934383_1934935_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934950_1936642_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936690_1937371_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937618_1938083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938252_1939182_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939194_1939842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939915_1941733_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941816_1942767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943419_1944370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	1974143	2038512	4105309	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974143_1975094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975315_1976266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976364_1977330_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977467_1978367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980961_1982449_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982459_1983656_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983728_1985048_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985044_1985920_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985950_1987099_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987116_1987431_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987452_1988175_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988174_1988993_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1988997_1989525_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989530_1990787_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991145_1992285_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992362_1993235_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994105_1995056_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995015_1995651_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996010_1997333_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997651_1998473_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999897_2000470_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000509_2002339_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002301_2003360_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003397_2003859_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003943_2004690_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006180_2009411_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009477_2010809_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011061_2011436_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011538_2012717_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012727_2013318_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013428_2014235_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014260_2015055_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016055_2017030_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017188_2017701_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017857_2018829_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020573_2021380_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021376_2022678_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022628_2023393_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023506_2024277_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024361_2025549_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025621_2025996_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026096_2027359_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027355_2028213_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028385_2029387_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029838_2030789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032352_2033504_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033872_2034109_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034172_2034340_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034453_2036349_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036512_2037463_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037561_2038512_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	2170039	2219692	4105309	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170039_2170990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171088_2173083_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173142_2174108_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174097_2176959_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176961_2177468_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177572_2178781_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178782_2179721_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179882_2180356_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180352_2181303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181413_2181854_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181982_2183212_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183250_2184072_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184125_2185277_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185368_2185857_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188407_2190957_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191027_2193601_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193866_2194067_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194098_2194260_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194317_2194656_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194804_2195755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196529_2197198_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197179_2199135_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199377_2200127_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200139_2201003_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201006_2202422_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202555_2203284_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203422_2203623_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203798_2204197_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204220_2205621_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205739_2206492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206780_2207458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207484_2208264_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208260_2209145_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209162_2209942_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209926_2210685_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2210822_2211458_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211725_2212742_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212839_2213880_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214014_2215307_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216666_2217050_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217067_2217655_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217692_2218643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218741_2219692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	2474946	2533190	4105309	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2474946_2475897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476376_2477033_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2477047_2478715_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2478717_2479347_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479558_2480653_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480797_2481610_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2481613_2483197_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2483367_2484498_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484684_2485761_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485842_2486493_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486507_2487911_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488194_2489013_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2489009_2489714_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490613_2491729_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491762_2492137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492159_2493317_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493329_2493563_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494197_2497167_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497181_2497391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497542_2498172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2498168_2500226_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500282_2500963_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500959_2501520_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501526_2502624_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502776_2503370_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503366_2504659_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504672_2505215_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505224_2506061_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506094_2507156_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507197_2508250_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508265_2508568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508709_2509660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2509838_2511533_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511529_2512615_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512662_2513562_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513572_2514217_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515238_2518481_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518491_2519646_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519872_2520835_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2520933_2521884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521982_2522933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522942_2523632_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523691_2524129_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524174_2525068_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525115_2526288_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526284_2527439_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2527635_2527986_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527975_2528410_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528426_2529377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529524_2529992_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529972_2531130_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531195_2532122_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532239_2533190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	2575468	2641968	4105309	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575468_2576419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576788_2577361_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577363_2578374_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578366_2578867_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578877_2579219_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579287_2580022_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580038_2580308_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580330_2581119_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581165_2582182_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582398_2583841_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584019_2585639_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585759_2587580_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587658_2589191_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589224_2590871_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590940_2591963_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591980_2593114_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593116_2593806_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593805_2594591_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594634_2595399_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595437_2596859_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596924_2597629_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597676_2598096_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598108_2598516_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598699_2599410_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599536_2599827_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599844_2600327_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604832_2605987_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606292_2607309_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607555_2608344_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608410_2609091_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609087_2609858_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609956_2610907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610962_2611880_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611890_2613069_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613088_2614084_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615672_2616281_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616268_2617309_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617326_2618289_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618285_2619479_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619475_2620273_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620298_2621285_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621303_2623343_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623544_2624225_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624238_2625150_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625146_2625725_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625863_2626769_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626776_2630196_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630183_2632784_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633739_2634372_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634765_2635524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635520_2636723_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636910_2637861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638768_2639914_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639900_2640656_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640772_2640952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641017_2641968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	2670083	2707495	4105309	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670083_2671034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671132_2672083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672175_2672715_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672821_2673166_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673223_2674672_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674859_2675195_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676822_2678001_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678083_2678584_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678693_2679395_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679406_2679871_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679885_2680161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680157_2680934_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680962_2681790_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681915_2682386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682512_2683406_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683453_2684635_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684647_2685463_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685596_2686124_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686120_2686618_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686765_2687143_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687364_2688315_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688413_2689025_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689259_2690387_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690497_2691586_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691638_2692490_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692509_2693391_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693567_2694881_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695091_2695925_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695921_2696503_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696856_2697807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697822_2698938_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699040_2699967_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699966_2701205_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701201_2701969_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701969_2702671_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702752_2703199_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704088_2704727_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705495_2706446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706544_2707495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	2806622	2861139	4105309	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806622_2807573_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807901_2808507_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808560_2809874_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809948_2810419_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810418_2811207_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811217_2812870_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812957_2813908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815069_2815576_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815572_2816337_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816352_2816637_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816701_2817691_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817862_2818792_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818763_2819450_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819483_2820029_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820073_2821339_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821335_2822238_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823419_2824364_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824458_2825976_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826017_2827646_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827753_2828635_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831747_2832122_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832146_2832485_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832528_2834163_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834201_2835548_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835655_2837077_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837146_2837731_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837833_2838784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838918_2840025_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840035_2841133_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841277_2842483_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842489_2843011_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843007_2843490_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843495_2843747_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843727_2844213_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844348_2847810_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847827_2848712_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848721_2849153_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849399_2849903_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849980_2851381_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851455_2852331_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852327_2853335_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853802_2854108_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854198_2854789_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854979_2855996_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856187_2858524_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858606_2859041_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859139_2860090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860188_2861139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	2869164	2925949	4105309	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2869164_2870115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871821_2872088_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872795_2873134_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877686_2878289_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878385_2879675_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879732_2880464_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880460_2881264_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881260_2882349_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882345_2883275_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883423_2884569_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884590_2885541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885871_2889693_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889849_2890518_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890522_2892196_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892214_2893534_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893538_2895854_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895909_2898078_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898074_2903255_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903353_2903668_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903895_2904141_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904235_2904754_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904853_2906059_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906174_2907572_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907688_2908267_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908339_2909731_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909898_2910849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911129_2911750_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911746_2912160_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912156_2913200_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913255_2913444_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913453_2914218_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914308_2914965_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915056_2915815_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915840_2917442_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917642_2918647_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918747_2919011_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919128_2919905_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920495_2921446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923829_2924942_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2924998_2925949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	2956334	3000025	4105309	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2956334_2957285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957405_2958302_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960579_2962805_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962969_2964058_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964014_2964668_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964715_2965513_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966044_2966995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967075_2968224_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968280_2969231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969329_2969635_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969663_2970098_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970099_2971344_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971340_2972051_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972065_2972977_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973339_2973744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973740_2974199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974205_2975114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975110_2975977_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975963_2976791_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976801_2977929_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979006_2980245_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980286_2981549_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981555_2982308_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982359_2982545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982820_2983285_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983316_2983976_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984120_2986229_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986225_2987176_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987279_2987900_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988003_2988744_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989878_2991003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991048_2991417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991658_2992609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993644_2994187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994572_2995523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995519_2996428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996554_2997391_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997903_2999013_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999074_3000025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	3399829	3444901	4105309	tRNA,transposase	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3399829_3400780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401546_3402641_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402633_3403968_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403921_3404605_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404630_3405794_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3405790_3406792_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406791_3407664_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407660_3408410_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408406_3409198_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409194_3410334_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410609_3411395_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411428_3412211_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412214_3412604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413743_3414607_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3414642_3415731_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415727_3416678_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417031_3420010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420936_3421815_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423763_3424714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424710_3425178_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425220_3425991_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3426011_3426812_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426822_3428232_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428326_3429112_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429351_3430368_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430475_3430868_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431005_3431686_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431690_3432662_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432757_3433708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3435212_3435914_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3435913_3437338_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3438407_3439748_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3439863_3441627_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441738_3442617_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442729_3443545_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443548_3443800_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443884_3444901_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	3462645	3515050	4105309	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3462645_3463662_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463757_3464468_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464464_3465454_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465549_3467181_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467183_3467921_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468076_3468949_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3469298_3470438_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470434_3471094_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471165_3471798_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471827_3472346_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472356_3473466_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473512_3474367_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474368_3475271_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476493_3477444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479198_3480188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480363_3481152_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481148_3482180_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482198_3482762_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482817_3484338_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484601_3485306_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3485313_3486042_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486156_3486531_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486573_3487863_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487859_3489029_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489025_3489865_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489924_3490860_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490872_3491823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491921_3492884_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492915_3493275_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493399_3494302_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494303_3496076_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496110_3496887_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498210_3499161_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3500012_3500333_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3500405_3501287_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3501403_3501646_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3501783_3502254_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3502266_3502806_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3502840_3504382_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3504480_3505386_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3505428_3506829_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3506838_3507261_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3507443_3508328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3508403_3509480_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3509786_3511889_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3511931_3514001_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3514099_3515050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	3532167	3585967	4105309	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3532167_3533118_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533458_3534409_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534507_3535458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535754_3536252_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536294_3538070_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538077_3538944_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538950_3539685_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540854_3541649_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541938_3542529_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542562_3543891_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543965_3545111_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545222_3546221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546183_3546618_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548134_3549019_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549015_3550221_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550217_3551078_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551190_3552981_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3553021_3553666_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3553687_3553996_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554161_3555448_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556881_3557832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559783_3560998_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561103_3562093_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562089_3562698_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562710_3563340_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563336_3563957_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3563988_3564780_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565631_3566087_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566105_3567032_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567085_3568372_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569302_3570175_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570171_3571122_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571220_3572171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3572275_3572506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3572632_3573022_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3573038_3575420_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3575412_3576789_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3576804_3577800_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3577818_3578811_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3579051_3579612_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3579616_3579943_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3579979_3580792_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3580802_3581885_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3581971_3583246_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3583968_3584919_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3585016_3585967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013951	Bordetella pertussis strain J096 chromosome, complete genome	4105309	3704291	3842671	4105309	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	118	3749984:3750001	3794624:3794641
WP_010929577.1|3704291_3705242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3705341_3706292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3706288_3706924_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3707053_3707953_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3708048_3708540_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3708586_3709552_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3710685_3711927_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3712040_3713057_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3713091_3713568_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3713710_3714619_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3714732_3715845_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3715945_3716431_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3716567_3717818_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3717919_3718432_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3718530_3719481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3719546_3720485_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3720507_3721134_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3721130_3721787_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3721783_3722386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3722392_3722980_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3723160_3723730_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3723800_3725120_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3725226_3725418_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3725669_3726959_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3727113_3728109_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3728193_3728868_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3728864_3729815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3729976_3731218_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3731214_3732159_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3732277_3733228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3733187_3734117_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3734170_3734506_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3734550_3735315_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3735338_3736079_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3736086_3737640_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3737674_3738652_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3738924_3739506_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3739557_3746460_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3746906_3747038_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3747303_3747510_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3748514_3749174_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3749201_3750347_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3749984:3750001	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3750487_3750823_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3750897_3751758_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3752021_3752723_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3752892_3753288_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3753397_3754348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3754358_3755000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3755166_3755409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3755507_3756458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3756493_3756961_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3757194_3757572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3757568_3757751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3757754_3758741_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3758737_3759385_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3759442_3759970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3760006_3761191_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3761201_3761543_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3761655_3761856_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3761852_3762842_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3764328_3766299_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3766540_3766939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3766947_3767871_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3768328_3769279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3769509_3771201_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3771249_3771522_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3771518_3771890_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3771985_3772120_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3772525_3773935_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3773937_3775047_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3775141_3777595_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3777713_3778505_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3778624_3780052_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3780090_3781062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3781480_3782644_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3782731_3783577_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3785133_3786084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3786638_3787013_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3787087_3788146_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3788169_3789120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3792001_3793171_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3793271_3794879_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3794624:3794641	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3794925_3796947_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3796975_3797221_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3797234_3798425_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3798620_3799586_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3799608_3800748_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3800959_3801922_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3802045_3804070_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3804266_3806510_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3806788_3807247_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3808174_3810796_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3810859_3813487_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3813638_3814703_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3814702_3815473_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3815481_3816315_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3816327_3817107_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3817180_3818614_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3818641_3819400_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3819455_3821306_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3821399_3821876_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3821892_3822813_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3822919_3823420_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3823793_3824486_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010931556.1|3825740_3829514_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3829850_3831740_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3831751_3832645_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3832748_3833546_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3833542_3834394_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3834455_3835136_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3835172_3835499_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3835499_3836459_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3836479_3836968_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3837249_3838266_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003807735.1|3838457_3839561_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931562.1|3839647_3840412_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_010931563.1|3840533_3841724_+	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010929591.1|3841720_3842671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
