The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019625	Listeria monocytogenes strain 10-092876-0769 LM12 chromosome, complete genome	2929632	126850	133377	2929632	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003728215.1|126850_127303_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|127308_127644_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003724946.1|127860_128289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003724947.1|128300_128717_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.3e-20
WP_003728212.1|128996_129386_+	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003721744.1|129398_129911_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|129958_130261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003740367.1|130302_130707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003724950.1|130693_132562_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	2.0e-20
WP_003724951.1|132558_133377_+|tail	phage tail family protein	tail	A0A2H4JAE4	uncultured_Caudovirales_phage	34.9	1.7e-40
>prophage 2
NZ_CP019625	Listeria monocytogenes strain 10-092876-0769 LM12 chromosome, complete genome	2929632	1116421	1123347	2929632	integrase	Bacillus_virus(33.33%)	8	1105832:1105845	1123926:1123939
1105832:1105845	attL	AGAAGCGGGAATAA	NA	NA	NA	NA
WP_003724632.1|1116421_1117912_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.5	2.8e-113
WP_003724633.1|1117923_1118748_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_003724634.1|1118760_1119069_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003724635.1|1119128_1119533_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012681222.1|1119661_1121218_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
WP_003724637.1|1121416_1121896_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JDE4	uncultured_Caudovirales_phage	34.3	7.3e-07
WP_003724638.1|1122073_1122271_+	LysR family transcriptional regulator	NA	Q8SBM7	Clostridium_phage	46.3	1.5e-06
WP_003740555.1|1122273_1123347_+|integrase	site-specific integrase	integrase	A0A0A8WF08	Clostridium_phage	46.5	5.5e-87
1123926:1123939	attR	AGAAGCGGGAATAA	NA	NA	NA	NA
>prophage 3
NZ_CP019625	Listeria monocytogenes strain 10-092876-0769 LM12 chromosome, complete genome	2929632	1273274	1329342	2929632	protease,tRNA	Bacillus_virus(16.67%)	55	NA	NA
WP_003734523.1|1273274_1274414_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1274493_1274889_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1275039_1275255_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003727523.1|1275378_1275912_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003731300.1|1275927_1276593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003727521.1|1276854_1277793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1277907_1279191_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1279375_1280635_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003726393.1|1280753_1281320_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003726394.1|1281354_1281924_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003727520.1|1282025_1282568_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726396.1|1282577_1283441_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727519.1|1283437_1284223_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003726399.1|1284356_1285217_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727517.1|1285489_1287568_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003726401.1|1287630_1288935_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_031645173.1|1289217_1290120_+	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003724001.1|1290140_1290680_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003727514.1|1290693_1292103_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
WP_003726695.1|1292123_1292903_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003726696.1|1293006_1293426_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003724130.1|1293448_1293760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003726697.1|1293762_1294635_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003726698.1|1294676_1295273_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003726699.1|1295430_1295838_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003727510.1|1296018_1297986_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_003734522.1|1297982_1300442_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	1.1e-101
WP_003726814.1|1300525_1300993_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_020830742.1|1301620_1303441_+	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003734520.1|1303473_1305360_-	peptidoglycan O-acetyltransferase OatA	NA	B5WZU0	Pseudomonas_phage	32.2	2.9e-43
WP_003726657.1|1305572_1306271_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_003723738.1|1306503_1308180_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726658.1|1308306_1309224_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003719566.1|1309345_1309579_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_012681271.1|1309689_1310913_+	GTPase HflX	NA	NA	NA	NA	NA
WP_003727505.1|1310905_1312132_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_003719570.1|1312333_1312702_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723435.1|1312772_1314107_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003726564.1|1314250_1315546_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.6	2.5e-147
WP_003726565.1|1315579_1316104_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003723438.1|1316134_1316749_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003726566.1|1316905_1317235_+	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003726567.1|1317328_1317556_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003726667.1|1319131_1319371_+	YneF family protein	NA	NA	NA	NA	NA
WP_003726668.1|1319419_1320151_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726669.1|1320172_1320679_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_003726670.1|1320688_1321993_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	51.9	4.7e-133
WP_012681273.1|1321982_1323188_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	7.0e-91
WP_003726672.1|1323165_1323540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723449.1|1323832_1324561_+	UMP kinase	NA	NA	NA	NA	NA
WP_003723450.1|1324560_1325118_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_031642179.1|1325348_1326107_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	3.3e-22
WP_003727496.1|1326120_1326909_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003726414.1|1326923_1328066_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003726415.1|1328079_1329342_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 4
NZ_CP019625	Listeria monocytogenes strain 10-092876-0769 LM12 chromosome, complete genome	2929632	1816170	1824456	2929632		Synechococcus_phage(33.33%)	8	NA	NA
WP_003726209.1|1816170_1816737_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
WP_003726210.1|1816733_1817783_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003722245.1|1817801_1819229_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_003726211.1|1819213_1821433_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.7	2.5e-158
WP_003726212.1|1821425_1822109_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003726213.1|1822112_1822358_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003726214.1|1822369_1823083_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.0e-40
WP_003726215.1|1823163_1824456_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 5
NZ_CP019625	Listeria monocytogenes strain 10-092876-0769 LM12 chromosome, complete genome	2929632	2352113	2392092	2929632	capsid,portal,terminase,holin,tail,coat	Listeria_phage(86.54%)	60	NA	NA
WP_031645303.1|2352113_2352347_-	hypothetical protein	NA	A8ATX0	Listeria_phage	97.4	4.7e-36
WP_031645688.1|2352582_2353194_-	hypothetical protein	NA	A0A0A8WFI2	Clostridium_phage	39.3	3.1e-26
WP_164481696.1|2353209_2353383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077398116.1|2353643_2354594_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A0B5CTW5	Listeria_phage	96.8	6.8e-182
WP_020830702.1|2354593_2354875_-|holin	phage holin	holin	A0A059T664	Listeria_phage	98.9	5.1e-45
WP_015970824.1|2354895_2355300_-	hypothetical protein	NA	Q8W5Z0	Listeria_phage	100.0	9.6e-53
WP_077398118.1|2356048_2357074_-	hypothetical protein	NA	A0A059T661	Listeria_phage	92.4	6.7e-175
WP_077398119.1|2357074_2358097_-|tail	phage tail protein	tail	A0A0B5D0G3	Listeria_phage	98.2	3.5e-192
WP_021496267.1|2358111_2358939_-|tail	phage tail family protein	tail	A0A059T6D8	Listeria_phage	97.5	2.1e-155
WP_077398120.1|2358935_2364302_-	tape measure protein	NA	A8ASK6	Listeria_phage	85.7	0.0e+00
WP_061668854.1|2364317_2364917_-	bacteriophage Gp15 family protein	NA	A0A0B5CTW0	Listeria_phage	68.0	1.1e-71
WP_003743404.1|2364921_2365344_-|tail	phage tail assembly chaperone	tail	A8ASK4	Listeria_phage	100.0	3.1e-70
WP_077398121.1|2365396_2365729_-	Ig-like domain-containing protein	NA	Q9T1B0	Listeria_phage	87.3	6.3e-42
WP_003735047.1|2365658_2366096_-	hypothetical protein	NA	A0A059T6D6	Listeria_phage	100.0	2.5e-78
WP_060567821.1|2366098_2366506_-|capsid	minor capsid protein	capsid	A8ASK1	Listeria_phage	98.5	4.5e-66
WP_031645711.1|2366505_2366844_-	hypothetical protein	NA	A0A059T7W4	Listeria_phage	97.3	7.0e-57
WP_069002547.1|2366843_2367206_-|capsid	minor capsid protein	capsid	A0A0B5D151	Listeria_phage	94.2	4.3e-60
WP_069002538.1|2367205_2367601_-	hypothetical protein	NA	A8ASJ8	Listeria_phage	84.7	2.0e-55
WP_069002535.1|2367619_2368621_-|coat	coat protein	coat	A0A059T6D4	Listeria_phage	99.7	2.8e-186
WP_069002532.1|2368620_2369211_-	phage scaffolding protein	NA	A0A059T7N8	Listeria_phage	99.0	3.7e-85
WP_012582403.1|2369290_2370430_-|capsid	phage minor capsid protein	capsid	A0A0B5D147	Listeria_phage	96.6	3.8e-203
WP_069002529.1|2370430_2372200_-|portal	phage portal protein	portal	A0A059T657	Listeria_phage	95.5	4.9e-266
WP_069002528.1|2372212_2373523_-|terminase	PBSX family phage terminase large subunit	terminase	A0A286QNX6	Streptococcus_phage	65.6	2.5e-166
WP_069002527.1|2373515_2374271_-|terminase	terminase small subunit	terminase	V5URT8	Oenococcus_phage	46.1	1.1e-44
WP_069002525.1|2374328_2375009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069002523.1|2375134_2375452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068996524.1|2375583_2376018_-	hypothetical protein	NA	A8AU03	Listeria_phage	96.5	4.8e-74
WP_069002521.1|2376144_2376528_-	DUF2481 family protein	NA	A0A0B5CYS3	Listeria_phage	92.1	7.0e-61
WP_069002520.1|2376531_2376936_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	88.1	8.1e-60
WP_003743380.1|2376880_2377072_-	hypothetical protein	NA	A8ASP6	Listeria_phage	95.2	8.9e-25
WP_069002517.1|2377090_2377573_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	90.0	2.4e-74
WP_031646071.1|2377572_2377974_-	hypothetical protein	NA	A0A059T6C9	Listeria_phage	79.1	1.2e-52
WP_020830815.1|2377970_2378249_-	DUF1642 domain-containing protein	NA	R4IBV9	Listeria_phage	53.3	9.6e-20
WP_020830814.1|2378245_2378533_-	hypothetical protein	NA	R4IBL5	Listeria_phage	60.5	7.4e-23
WP_068995190.1|2378544_2378772_-	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	97.3	6.6e-35
WP_069002515.1|2378764_2379094_-	hypothetical protein	NA	A8ATZ5	Listeria_phage	89.7	2.9e-07
WP_069002506.1|2379484_2379673_-	alkylphosphonate utilization operon protein PhnA	NA	D7RWG4	Brochothrix_phage	44.6	1.7e-07
WP_164481695.1|2379672_2379843_-	hypothetical protein	NA	A0A059T7N2	Listeria_phage	100.0	9.3e-26
WP_069002503.1|2379843_2380254_-	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	57.1	2.2e-36
WP_069002500.1|2380250_2380856_-	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	67.3	4.5e-70
WP_069002498.1|2380852_2381245_-	hypothetical protein	NA	A0A0B5CYQ9	Listeria_phage	95.4	3.9e-67
WP_069002495.1|2381261_2381705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077398122.1|2381966_2382941_-	phage replisome organizer N-terminal domain-containing protein	NA	A8ASN4	Listeria_phage	75.4	4.0e-129
WP_077398123.1|2382957_2383656_-	ERF family protein	NA	A0A059T676	Listeria_phage	99.1	1.4e-107
WP_010989961.1|2383661_2384138_-	siphovirus Gp157 family protein	NA	A0A059T5F1	Listeria_phage	80.4	3.4e-57
WP_070210914.1|2384134_2384329_-	hypothetical protein	NA	A8ASN1	Listeria_phage	95.3	1.0e-28
WP_077398124.1|2384633_2384822_-	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	98.4	1.0e-28
WP_061724709.1|2384930_2385146_-	hypothetical protein	NA	Q9T176	Listeria_phage	88.7	9.1e-26
WP_070213819.1|2385142_2385676_-	hypothetical protein	NA	A0A0B5D173	Listeria_phage	89.6	1.6e-79
WP_061385874.1|2385797_2386571_-	Rha family transcriptional regulator	NA	R9QMT9	Lactococcus_phage	40.7	8.0e-40
WP_061385873.1|2386634_2386994_+	DUF2513 domain-containing protein	NA	A0A2H4J4K9	uncultured_Caudovirales_phage	25.4	2.3e-05
WP_003733687.1|2386952_2387147_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	95.3	1.4e-25
WP_003722568.1|2387143_2387386_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061668836.1|2387541_2388018_+	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	64.1	1.4e-42
WP_020975175.1|2388174_2388342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039379299.1|2388396_2389098_+	hypothetical protein	NA	A0A0B5D125	Listeria_phage	89.7	3.9e-86
WP_077398125.1|2389118_2389799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031645680.1|2389864_2391223_+	recombinase family protein	NA	Q8LTD8	Listeria_phage	98.9	7.8e-256
WP_031645247.1|2391213_2391690_+	competence protein ComK	NA	NA	NA	NA	NA
WP_003739618.1|2391744_2392092_-	helix-turn-helix transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
>prophage 6
NZ_CP019625	Listeria monocytogenes strain 10-092876-0769 LM12 chromosome, complete genome	2929632	2533631	2541476	2929632		Streptococcus_phage(50.0%)	7	NA	NA
WP_003725407.1|2533631_2534603_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003725408.1|2534610_2535579_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	3.9e-68
WP_003722606.1|2535580_2536456_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003725409.1|2536563_2538294_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.1	9.5e-174
WP_003741152.1|2538335_2539397_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_003725411.1|2539413_2540397_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003722610.1|2540516_2541476_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
