assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	1	433302-433402	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP014402.1_424874_425084_-,NA|128aa|up_6|NZ_CP014402.1_425908_426292_-,NA|34aa|up_0|NZ_CP014402.1_432526_432628_+,NA|221aa|down_1|NZ_CP014402.1_434492_435155_-,NA|179aa|down_7|NZ_CP014402.1_441246_441783_-	NA|84aa|up_9|NZ_CP014402.1_424584_424836_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP014402.1_424874_425084_-	NA	NA|194aa|up_7|NZ_CP014402.1_425261_425843_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP014402.1_425908_426292_-	NA	NA|209aa|up_5|NZ_CP014402.1_426546_427173_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP014402.1_427617_429141_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP014402.1_429156_429726_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP014402.1_430217_430973_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP014402.1_431053_432442_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP014402.1_432526_432628_+	NA	NA|319aa|down_0|NZ_CP014402.1_433418_434375_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP014402.1_434492_435155_-	NA	NA|136aa|down_2|NZ_CP014402.1_435297_435705_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP014402.1_436217_436796_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP014402.1_436795_438064_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP014402.1_438101_439568_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP014402.1_439592_441134_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP014402.1_441246_441783_-	NA	NA|235aa|down_8|NZ_CP014402.1_442175_442880_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP014402.1_443278_443551_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	2	672461-672553	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP014402.1_668945_669053_+,NA|169aa|down_4|NZ_CP014402.1_676300_676807_+,NA|239aa|down_5|NZ_CP014402.1_676968_677685_+	NA|313aa|up_9|NZ_CP014402.1_663147_664086_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP014402.1_664296_664833_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP014402.1_665001_665478_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP014402.1_665517_666813_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP014402.1_666840_667362_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP014402.1_667860_668871_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP014402.1_668945_669053_+	NA	NA|139aa|up_2|NZ_CP014402.1_669145_669562_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP014402.1_669558_671220_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP014402.1_671607_672243_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP014402.1_672621_673509_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP014402.1_673656_674607_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP014402.1_674661_675381_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP014402.1_675364_676165_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP014402.1_676300_676807_+	NA	NA|239aa|down_5|NZ_CP014402.1_676968_677685_+	NA	NA|263aa|down_6|NZ_CP014402.1_677853_678642_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP014402.1_678892_679267_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP014402.1_680982_681519_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP014402.1_681499_682003_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	3	848271-848356	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	848301-848326|848301-848326|848301-848326|848301-848326|848301-848326	NZ_CP014402.1_811263-811238|NZ_CP014402.1_2875476-2875501|NZ_CP014402.1_2875532-2875557|NZ_CP014402.1_811319-811294|NZ_CP014402.1_997940-997915	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP014402.1_835523_836363_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP014402.1_836536_837187_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP014402.1_837183_837420_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP014402.1_837688_839674_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP014402.1_839681_842528_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP014402.1_843189_844122_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP014402.1_844127_844967_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP014402.1_844974_845460_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP014402.1_845467_846907_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP014402.1_846973_847909_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP014402.1_848788_849700_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP014402.1_849696_850692_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP014402.1_850801_851746_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP014402.1_852319_852907_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP014402.1_853149_854052_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP014402.1_854753_855383_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP014402.1_856084_857098_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP014402.1_857150_858161_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP014402.1_858299_859490_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP014402.1_859611_860373_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	4	855584-855671	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCACCCCAACTTGCATTGCCTGTAGAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|153aa|down_6|NZ_CP014402.1_863666_864125_+	NA|280aa|up_9|NZ_CP014402.1_844127_844967_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP014402.1_844974_845460_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP014402.1_845467_846907_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP014402.1_846973_847909_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP014402.1_848788_849700_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP014402.1_849696_850692_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP014402.1_850801_851746_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP014402.1_852319_852907_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP014402.1_853149_854052_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP014402.1_854753_855383_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP014402.1_856084_857098_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP014402.1_857150_858161_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP014402.1_858299_859490_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP014402.1_859611_860373_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP014402.1_860375_861893_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP014402.1_862022_863327_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP014402.1_863666_864125_+	NA	NA|78aa|down_7|NZ_CP014402.1_864191_864425_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP014402.1_864540_865281_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP014402.1_865314_867687_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	5	891542-891623	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	891566-891599|891566-891599	NZ_CP014402.1_1424145-1424112|NZ_CP014402.1_1513304-1513337	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP014402.1_884645_885227_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP014402.1_885299_885917_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP014402.1_886071_886566_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP014402.1_886964_887387_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP014402.1_887534_888251_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP014402.1_888333_888873_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP014402.1_889022_889343_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP014402.1_889486_889843_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP014402.1_890000_890381_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP014402.1_890559_891438_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP014402.1_892179_892566_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP014402.1_892558_892855_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP014402.1_893104_894130_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP014402.1_894122_894818_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP014402.1_894835_895657_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP014402.1_895799_897020_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP014402.1_897107_897836_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP014402.1_897859_898588_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP014402.1_898604_899063_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP014402.1_899074_899407_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	6	997941-998223	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	997971-997996|997971-997996|997971-997996|997971-997996|998085-998110|998085-998110	NZ_CP014402.1_997915-997940|NZ_CP014402.1_811238-811263|NZ_CP014402.1_2875501-2875476|NZ_CP014402.1_2875557-2875532|NZ_CP014402.1_848382-848357|NZ_CP014402.1_394635-394660	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP014402.1_986829_988326_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP014402.1_988318_988660_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP014402.1_988659_989088_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP014402.1_989080_991486_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP014402.1_991616_992000_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP014402.1_992063_992657_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP014402.1_993072_993450_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP014402.1_993811_994939_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP014402.1_995246_996437_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP014402.1_996545_997790_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP014402.1_998292_999222_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP014402.1_999463_1000843_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP014402.1_1000832_1002038_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP014402.1_1002388_1003720_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP014402.1_1004044_1004620_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP014402.1_1004624_1005149_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP014402.1_1005164_1005740_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP014402.1_1005899_1009376_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP014402.1_1009376_1013030_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP014402.1_1013195_1014098_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	7	1131612-1131699	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP014402.1_1131708_1131843_-,NA|432aa|down_1|NZ_CP014402.1_1131994_1133290_+	NA|224aa|up_9|NZ_CP014402.1_1119402_1120074_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP014402.1_1120066_1122256_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP014402.1_1122234_1123719_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP014402.1_1123711_1124740_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP014402.1_1124742_1125309_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP014402.1_1125323_1126802_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP014402.1_1126823_1128071_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP014402.1_1128335_1129142_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP014402.1_1129134_1130535_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP014402.1_1130549_1131125_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP014402.1_1131708_1131843_-	NA	NA|432aa|down_1|NZ_CP014402.1_1131994_1133290_+	NA	NA|391aa|down_2|NZ_CP014402.1_1133714_1134887_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP014402.1_1134940_1135483_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP014402.1_1135636_1135903_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP014402.1_1135905_1137624_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP014402.1_1137860_1138094_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP014402.1_1138291_1139653_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP014402.1_1139649_1140669_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP014402.1_1140801_1141464_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	8	2075174-2075252	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2075197-2075229|2075197-2075229|2075197-2075229|2075197-2075229|2075197-2075229|2075197-2075229	NZ_CP014402.1_848337-848369|NZ_CP014402.1_1215975-1215943|NZ_CP014402.1_1424099-1424067|NZ_CP014402.1_1741857-1741889|NZ_CP014402.1_2710114-2710146|NZ_CP014402.1_1513350-1513382	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP014402.1_2069368_2069644_+,NA|129aa|up_1|NZ_CP014402.1_2073629_2074016_-,NA|138aa|down_1|NZ_CP014402.1_2076935_2077349_-,NA|37aa|down_2|NZ_CP014402.1_2077377_2077488_-,NA|31aa|down_6|NZ_CP014402.1_2080493_2080586_-	NA|419aa|up_9|NZ_CP014402.1_2067291_2068548_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP014402.1_2068550_2068751_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP014402.1_2068897_2069362_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP014402.1_2069368_2069644_+	NA	NA|406aa|up_5|NZ_CP014402.1_2069921_2071139_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP014402.1_2071254_2071884_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP014402.1_2071873_2072917_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP014402.1_2072913_2073615_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP014402.1_2073629_2074016_-	NA	NA|253aa|up_0|NZ_CP014402.1_2074232_2074991_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP014402.1_2075518_2076505_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP014402.1_2076935_2077349_-	NA	NA|37aa|down_2|NZ_CP014402.1_2077377_2077488_-	NA	NA|244aa|down_3|NZ_CP014402.1_2077573_2078305_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP014402.1_2078306_2079620_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP014402.1_2079911_2080412_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP014402.1_2080493_2080586_-	NA	DEDDh|185aa|down_7|NZ_CP014402.1_2080800_2081355_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP014402.1_2081422_2082493_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP014402.1_2082739_2083270_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	9	2310237-2310387	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP014402.1_2305108_2305339_-,NA|364aa|up_0|NZ_CP014402.1_2309127_2310219_+,NA|35aa|down_0|NZ_CP014402.1_2310718_2310823_-,NA|31aa|down_2|NZ_CP014402.1_2312934_2313027_+	NA|237aa|up_9|NZ_CP014402.1_2300718_2301429_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP014402.1_2301549_2301993_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP014402.1_2302192_2302606_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP014402.1_2303063_2304437_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP014402.1_2305108_2305339_-	NA	NA|313aa|up_4|NZ_CP014402.1_2305369_2306308_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP014402.1_2306742_2307408_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP014402.1_2307559_2307880_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP014402.1_2307881_2308862_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP014402.1_2309127_2310219_+	NA	NA|35aa|down_0|NZ_CP014402.1_2310718_2310823_-	NA	NA|379aa|down_1|NZ_CP014402.1_2311509_2312646_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP014402.1_2312934_2313027_+	NA	NA|286aa|down_3|NZ_CP014402.1_2313731_2314589_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP014402.1_2314656_2315439_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP014402.1_2315670_2317476_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP014402.1_2318156_2319695_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP014402.1_2319729_2321862_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP014402.1_2321873_2322308_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP014402.1_2322307_2323414_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002000605.1_ASM200060v1	NZ_CP014402	Staphylococcus aureus strain USA300-SUR11 chromosome, complete genome	10	2434154-2434347	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2434177-2434209|2434177-2434209|2434177-2434209|2434177-2434209|2434177-2434209|2434233-2434268|2434233-2434268|2434233-2434268|2434233-2434268|2434292-2434324|2434292-2434324|2434292-2434324|2434292-2434324	NZ_CP014402.1_848337-848369|NZ_CP014402.1_1215975-1215943|NZ_CP014402.1_1424099-1424067|NZ_CP014402.1_1513350-1513382|NZ_CP014402.1_2710114-2710146|NZ_CP014402.1_1215922-1215887|NZ_CP014402.1_1920343-1920308|NZ_CP014402.1_1741796-1741831|NZ_CP014402.1_2085941-2085976|NZ_CP014402.1_848337-848369|NZ_CP014402.1_1215975-1215943|NZ_CP014402.1_1424099-1424067|NZ_CP014402.1_2710114-2710146	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP014402.1_2424681_2424846_+,NA|106aa|up_8|NZ_CP014402.1_2425090_2425408_+,NA|84aa|up_5|NZ_CP014402.1_2430532_2430784_+,NA|57aa|up_0|NZ_CP014402.1_2433923_2434094_+,NA	NA|55aa|up_9|NZ_CP014402.1_2424681_2424846_+	NA	NA|106aa|up_8|NZ_CP014402.1_2425090_2425408_+	NA	NA|1056aa|up_7|NZ_CP014402.1_2425594_2428762_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP014402.1_2428878_2430144_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP014402.1_2430532_2430784_+	NA	NA|255aa|up_4|NZ_CP014402.1_2430775_2431540_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP014402.1_2431701_2432142_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP014402.1_2432134_2433346_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP014402.1_2433447_2433798_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP014402.1_2433923_2434094_+	NA	NA|341aa|down_0|NZ_CP014402.1_2434488_2435511_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP014402.1_2435530_2436130_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP014402.1_2436136_2436370_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP014402.1_2436375_2436822_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP014402.1_2436835_2437321_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP014402.1_2437317_2438577_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP014402.1_2438639_2439134_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP014402.1_2439135_2439642_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP014402.1_2439672_2440677_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP014402.1_2440846_2441452_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
