The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	779890	787710	2919720		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|779890_780946_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|780945_781632_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|781606_782080_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|782421_782862_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|783141_783726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|783824_784538_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|784541_784961_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|784962_785631_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|785981_786575_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|786558_787710_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	799682	814301	2919720		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|799682_800741_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|801091_801634_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|802257_803175_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|803265_803367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|803444_804950_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|805290_805791_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|805810_806677_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|807477_807876_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|807838_809944_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|810061_811033_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|811434_811590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|811628_812600_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|812586_813543_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|813539_814301_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	893011	959997	2919720	integrase,holin,plate,head,tail,terminase,portal,capsid	Staphylococcus_phage(63.41%)	91	900814:900833	956776:956795
WP_000571218.1|893011_894037_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|894029_894725_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|894742_895564_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266158.1|895706_896927_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|897014_897743_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|897766_898495_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|898511_898970_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|898981_899314_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|899506_899770_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|899762_900035_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|900046_900220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|900186_900390_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|900391_900775_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|900775_901024_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
900814:900833	attL	GATATTGAAAGAAAAGTTTG	NA	NA	NA	NA
WP_000985235.1|901115_903488_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|904158_904503_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|904727_904934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|904920_905979_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|906162_906654_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000801979.1|907082_908051_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|908285_908840_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000752917.1|909873_910068_+	CsbD family protein	NA	NA	NA	NA	NA
WP_001183858.1|910300_911152_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|911479_912241_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_077467053.1|912338_913646_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_001006454.1|913751_915002_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_001010508.1|914991_915456_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|915606_917004_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_050961182.1|917071_918121_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	7.7e-203
WP_050961183.1|918182_918698_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	99.4	1.5e-37
WP_000896616.1|918701_919202_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_050961185.1|919249_919924_-	LexA family transcriptional regulator	NA	A0A1W6JPS3	Staphylococcus_phage	91.1	6.6e-115
WP_001014907.1|920115_920355_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	88.5	1.2e-31
WP_050961186.1|920370_920574_+	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	98.5	6.1e-32
WP_050961187.1|920761_921553_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDX0	Staphylococcus_phage	99.2	7.2e-145
WP_000187184.1|921553_921778_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_025920885.1|921817_922267_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	99.3	6.7e-79
WP_000977378.1|922280_922502_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000066013.1|922494_922662_+	DUF1270 domain-containing protein	NA	S4V7J2	Staphylococcus_phage	96.4	4.0e-21
WP_033843163.1|922662_922983_+	hypothetical protein	NA	S4V968	Staphylococcus_phage	99.1	2.4e-54
WP_000291075.1|923076_923337_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000802315.1|923344_923581_+	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	100.0	2.7e-39
WP_000002513.1|923573_924053_+	siphovirus Gp157 family protein	NA	D2JGK0	Staphylococcus_phage	100.0	5.3e-82
WP_001288247.1|924052_924826_+	AAA family ATPase	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
WP_050961188.1|924856_925411_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	99.5	2.2e-100
WP_050961189.1|925423_926089_+	hypothetical protein	NA	Q4ZDY3	Staphylococcus_virus	98.2	7.7e-124
WP_050961190.1|926088_926871_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	99.2	4.1e-140
WP_050961191.1|926842_927658_+	phage replisome organizer N-terminal domain-containing protein	NA	Q4ZAS2	Staphylococcus_virus	96.7	8.9e-114
WP_050961192.1|927667_928447_+	ATP-binding protein	NA	Q6R838	Staphylococcus_virus	98.8	5.1e-143
WP_000237153.1|928440_928602_+	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_031898212.1|928845_929253_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	97.8	5.5e-72
WP_031898213.1|929252_929438_+	DUF3113 family protein	NA	A0A0H3U473	Staphylococcus_phage	96.7	6.0e-26
WP_050961193.1|929438_930056_+	hypothetical protein	NA	A0A059T7P3	Staphylococcus_phage	99.0	2.8e-83
WP_050961194.1|930056_930305_+	hypothetical protein	NA	S4V683	Staphylococcus_phage	98.8	1.6e-42
WP_000693615.1|930318_930705_+	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
WP_050961195.1|930892_931318_+	hypothetical protein	NA	A0A2I6PE09	Staphylococcus_phage	100.0	4.8e-79
WP_050961196.1|931331_931841_+	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	88.8	2.5e-82
WP_001065056.1|932160_932409_+	DUF1024 family protein	NA	Q4ZCN8	Staphylococcus_virus	100.0	2.4e-38
WP_000185662.1|932401_932932_+	dUTP diphosphatase	NA	B2ZYX2	Staphylococcus_phage	100.0	1.9e-96
WP_031764620.1|932968_933175_+	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	97.1	9.3e-20
WP_031924097.1|933171_933345_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	98.2	1.9e-21
WP_000990005.1|933345_933492_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000058632.1|933506_933926_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_001003271.1|934112_934553_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169945.1|934539_935817_+|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
WP_000921887.1|935827_937363_+|portal	phage portal protein	portal	A1KX25	Staphylococcus_virus	100.0	5.8e-292
WP_001813737.1|937369_938365_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	99.4	3.8e-183
WP_031898218.1|938437_938587_+	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	64.3	3.7e-10
WP_031925652.1|938695_939316_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	92.2	1.2e-67
WP_000438500.1|939329_940304_+|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	99.7	1.8e-182
WP_001114085.1|940325_940613_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208959.1|940621_940954_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_031880723.1|940950_941253_+	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	99.0	7.4e-50
WP_001017815.1|941252_941600_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188640.1|941611_941995_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	1.0e-67
WP_031898198.1|942013_942595_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	97.9	3.5e-104
WP_031898197.1|942656_943022_+|tail	tail assembly protein	tail	A0A0F6N4J9	Staphylococcus_phage	99.2	6.2e-59
WP_001599101.1|943051_943396_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	7.2e-57
WP_050961197.1|943412_946880_+	hypothetical protein	NA	A0EWM3	Staphylococcus_virus	99.3	1.7e-246
WP_031898192.1|946892_947840_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	8.0e-183
WP_000156414.1|947848_949750_+|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	97.9	0.0e+00
WP_050961198.1|949764_951675_+	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.2	0.0e+00
WP_050961199.1|951674_953498_+|plate	phage baseplate upper protein	plate	B1H3M3	Staphylococcus_phage	99.7	0.0e+00
WP_031844790.1|953497_953875_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	99.2	7.6e-60
WP_000782200.1|953878_954052_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|954091_954391_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_050961200.1|954527_956426_+	glucosaminidase domain-containing protein	NA	A1KX46	Staphylococcus_virus	98.9	0.0e+00
WP_031890881.1|956438_957677_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	96.6	3.3e-205
956776:956795	attR	CAAACTTTTCTTTCAATATC	NA	NA	NA	NA
WP_031890882.1|957682_958078_+	hypothetical protein	NA	A0A0E3XBL9	Staphylococcus_phage	99.2	6.1e-68
WP_000354119.1|958133_958571_+|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	100.0	1.1e-73
WP_050961201.1|958551_959997_+	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	98.3	7.2e-292
>prophage 4
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	1116743	1125216	2919720		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1116743_1117226_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1117212_1118337_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1118340_1119045_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1119044_1119308_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1119309_1119981_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1119973_1122163_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1122141_1123626_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1123618_1124647_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1124649_1125216_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	1566985	1652521	2919720	integrase,holin,tRNA,protease,head,tail,capsid,terminase,portal,plate	Staphylococcus_phage(84.21%)	106	1603348:1603368	1652526:1652546
WP_000858789.1|1566985_1568278_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1568599_1571293_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1571316_1572288_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1572274_1573477_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1573481_1574624_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1574864_1575182_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1575518_1576199_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1576270_1576858_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1576847_1577423_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1577436_1578681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1578687_1579986_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1579995_1581060_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1581085_1582252_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1582637_1582838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1583046_1583496_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1583587_1584547_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1584548_1585274_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1585276_1585849_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1586279_1586552_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1586722_1587721_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|1587737_1589048_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1589269_1590445_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1590701_1590893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1591009_1591126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1591156_1591816_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1591892_1592861_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1592975_1593962_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1594122_1594239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1594363_1595824_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1595976_1597356_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1597345_1598299_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1598406_1598655_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1598760_1599306_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1599584_1599704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1599902_1600817_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1600831_1601038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1601030_1601969_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1602025_1602943_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1603033_1603219_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1603348:1603368	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1603467_1604451_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1604446_1605385_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1605774_1607229_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_077467060.1|1607239_1607542_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	99.0	2.9e-46
WP_000466784.1|1607677_1607977_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000868795.1|1608296_1608794_+	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
WP_000163792.1|1608865_1610818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001159903.1|1610824_1611061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000916020.1|1611307_1611472_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1611464_1611854_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1611853_1613320_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1613319_1615230_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1615245_1615536_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1615535_1617119_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1617127_1617952_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1617951_1624152_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1624165_1624324_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1624365_1624716_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1624773_1625229_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1625320_1625962_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1625996_1626392_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1626392_1626794_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1626790_1627123_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1627134_1627413_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1627481_1628645_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1628656_1629430_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1629413_1630652_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1630656_1632348_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1632337_1632643_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1632769_1633084_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1633240_1633678_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1633690_1635058_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1635038_1635329_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1635462_1635561_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1635669_1638117_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1638404_1638605_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1638672_1638825_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1638821_1639208_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1639200_1639437_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1639429_1639633_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1639629_1639836_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1639872_1640409_-	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1640401_1640650_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1640664_1640907_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1640921_1641122_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1641124_1641382_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1641381_1641783_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1641782_1641968_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1641980_1643933_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1644000_1644558_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1644583_1645750_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1645746_1646109_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1646122_1646383_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1646387_1646690_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1646682_1647000_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1647265_1647529_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1647553_1647769_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1647815_1648055_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001001356.1|1648051_1648228_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|1648311_1648503_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1648663_1648993_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|1649005_1649467_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|1649484_1649919_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1649947_1650343_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1650432_1650579_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1650575_1651190_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1651315_1652521_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
1652526:1652546	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
>prophage 6
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	1713339	1721651	2919720	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1713339_1714125_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1714250_1715141_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1715150_1716497_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1716610_1717711_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1717713_1718391_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1718521_1719628_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1719851_1721651_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	1790788	1799831	2919720	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1790788_1791307_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1791328_1793602_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1793804_1796084_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1796358_1796619_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1796637_1797777_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1797799_1798825_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1798826_1799831_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	1925292	2004624	2919720	transposase,tRNA,protease	Staphylococcus_phage(94.83%)	74	NA	NA
WP_001050549.1|1925292_1931853_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1932178_1932490_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1932511_1934929_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1935216_1936398_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1936507_1937461_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1937457_1938021_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1938140_1938542_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1940120_1940948_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1940950_1941070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1941181_1942183_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1942304_1942769_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1942781_1943963_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1943973_1944606_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1944612_1945656_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1946136_1947639_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1948161_1948476_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1948475_1949768_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1949785_1950181_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1950475_1951330_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1951605_1951830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1952028_1952499_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1952611_1953055_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1953041_1953485_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1953780_1954416_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096459.1|1954855_1955569_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1955828_1956131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1956386_1956752_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1956748_1957102_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1959184_1960018_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1960229_1961138_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1961262_1962456_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1962826_1964419_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000639100.1|1964554_1964956_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_002868962.1|1965414_1966161_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1966165_1966639_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1966704_1966962_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1966958_1967960_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1967964_1969443_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1969601_1970057_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1970359_1971010_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1971090_1972086_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000627551.1|1972828_1973173_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1973270_1973822_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1974039_1974681_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1974794_1974980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1974981_1975158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1975168_1975552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1976155_1976299_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1976501_1976597_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1976719_1976821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1977168_1977546_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1978066_1982179_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1983028_1984228_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1984220_1985777_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1985940_1986075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1986139_1986859_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1987009_1987726_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1987827_1987935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1987883_1988603_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1988723_1989443_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1989500_1990223_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1990347_1991055_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1992018_1992585_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1993058_1993757_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1993753_1994515_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1994511_1995204_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1995226_1996600_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1996609_1997128_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1997143_1998388_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1998380_2001374_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|2001438_2001582_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|2002318_2002462_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_077467065.1|2002703_2003687_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	8.9e-185
WP_000473596.1|2003688_2004624_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 9
NZ_CP014409	Staphylococcus aureus strain USA300-SUR13 chromosome, complete genome	2919720	2089760	2186195	2919720	integrase,holin,tRNA,protease,head,tail,terminase,portal,capsid	Staphylococcus_phage(91.03%)	117	2151186:2151203	2176117:2176134
WP_000027928.1|2089760_2091218_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2091219_2091522_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957015.1|2091888_2093427_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2093515_2094715_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2094727_2096731_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2096734_2098927_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272069.1|2098923_2099616_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2099787_2100090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2100198_2101494_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2102354_2103521_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2103551_2103878_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2104169_2104343_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2104323_2104926_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2105196_2106018_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2106010_2107480_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2107663_2108740_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2108759_2109554_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2109625_2109733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|2109743_2111306_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2111510_2112608_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2112979_2113540_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2113592_2114522_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2114716_2114890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2114941_2116321_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2116440_2117469_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2117738_2118140_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2118712_2118886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2119336_2120377_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2120433_2121276_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2121272_2121830_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2121889_2122414_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2122534_2123098_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2123163_2123904_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2123903_2124776_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2124772_2125453_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2125453_2126350_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2126346_2126727_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2126990_2127167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2127409_2127508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2127707_2128994_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_050961220.1|2129618_2131373_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2132330_2132510_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2132820_2133081_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2133133_2133484_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2134168_2134618_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2135697_2136189_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2136379_2137135_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2137146_2137401_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2137452_2137560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2137612_2137789_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2137938_2138235_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2138292_2138580_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2138626_2138779_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_077467069.1|2138768_2142554_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_000567394.1|2142569_2144054_-|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001549166.1|2144050_2148580_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001549167.1|2148636_2148774_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096354.1|2148824_2149175_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2149224_2149464_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2149490_2150135_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2150138_2150543_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2150539_2150944_-	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2150940_2151303_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2151186:2151203	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2151286_2151571_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2151560_2151845_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2151864_2153010_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2153033_2153771_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2153754_2154942_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2154957_2156619_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2156615_2156960_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2157089_2157389_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2157620_2158037_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2158064_2158265_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2158264_2158414_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2158410_2158797_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2158793_2159000_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2158996_2159242_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2159278_2159812_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2159804_2160047_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2160036_2160273_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2160265_2160637_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2160645_2160888_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2160891_2161260_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2161272_2161677_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2161685_2161904_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2161910_2162804_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_050961221.1|2162833_2163304_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	99.4	2.8e-80
WP_071665632.1|2163304_2163922_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2164002_2164923_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2164924_2166868_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2166876_2167140_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2167148_2167409_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2167448_2167709_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2167803_2167965_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2167961_2168282_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2168340_2168571_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001001356.1|2168567_2168744_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001148642.1|2168759_2169512_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2169562_2169892_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2169880_2170096_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2170111_2170375_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2170371_2170545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2170507_2171221_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2171236_2172169_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2172174_2172516_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2172719_2172902_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2172979_2173693_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2173883_2174921_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|2176039_2177056_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2176117:2176134	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2177077_2178133_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|2178567_2179791_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|2180162_2181008_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2181069_2181981_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2182141_2183449_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2184301_2184745_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2184909_2185287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2185604_2186195_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
>prophage 1
NZ_CP014411	Staphylococcus aureus strain USA300-SUR13 plasmid pUSA04-1-SUR13, complete sequence	27068	0	11744	27068	transposase	Streptococcus_phage(50.0%)	12	NA	NA
WP_000627289.1|1237_1768_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|1860_2655_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001105991.1|3670_4345_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001037130.1|4606_4792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000690637.1|5014_5593_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_000182645.1|5856_6237_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096381.1|6226_7984_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733287.1|8090_8936_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.0	5.7e-31
WP_000418035.1|9461_9881_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000481279.1|10004_10976_+	oxidoreductase	NA	NA	NA	NA	NA
WP_001791613.1|11147_11240_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119690.1|11396_11744_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
>prophage 2
NZ_CP014411	Staphylococcus aureus strain USA300-SUR13 plasmid pUSA04-1-SUR13, complete sequence	27068	18043	25882	27068	transposase	Staphylococcus_phage(40.0%)	7	NA	NA
WP_000797248.1|18043_18229_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_001049146.1|18233_18572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000583528.1|18817_19426_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_000196697.1|19911_20811_-	Mph(C) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_000438874.1|20909_22376_-	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.7	6.6e-67
WP_001105960.1|22849_23524_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000793446.1|24952_25882_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
