The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	775499	783319	2915433		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|775499_776555_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|776554_777241_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|777215_777689_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|778030_778471_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|778750_779335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|779433_780147_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|780150_780570_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|780571_781240_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|781590_782184_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|782167_783319_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	795291	810022	2915433		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|795291_796350_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|796700_797243_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|797866_798784_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|798874_798976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|799053_800559_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|800899_801400_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|801419_802286_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|803086_803485_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|803447_805553_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|805670_806642_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|807155_807311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|807349_808321_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|808307_809264_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|809260_810022_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	888731	955717	2915433	portal,head,capsid,plate,holin,tail,terminase,integrase	Staphylococcus_phage(63.86%)	92	896534:896553	952496:952515
WP_000571218.1|888731_889757_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|889749_890445_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|890462_891284_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266158.1|891426_892647_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|892734_893463_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|893486_894215_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|894231_894690_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|894701_895034_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|895226_895490_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|895482_895755_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|895766_895940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|895906_896110_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|896111_896495_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|896495_896744_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
896534:896553	attL	GATATTGAAAGAAAAGTTTG	NA	NA	NA	NA
WP_000985235.1|896835_899208_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|899878_900223_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|900447_900654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|900640_901699_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|901882_902374_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000801979.1|902802_903771_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|904005_904560_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000752917.1|905593_905788_+	CsbD family protein	NA	NA	NA	NA	NA
WP_001183858.1|906020_906872_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|907199_907961_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_077445410.1|908058_909366_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_001006454.1|909471_910722_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_001010508.1|910711_911176_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|911326_912724_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_050961182.1|912791_913841_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	7.7e-203
WP_050961183.1|913902_914418_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	99.4	1.5e-37
WP_000896616.1|914421_914922_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_050961185.1|914969_915644_-	LexA family transcriptional regulator	NA	A0A1W6JPS3	Staphylococcus_phage	91.1	6.6e-115
WP_001014907.1|915835_916075_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	88.5	1.2e-31
WP_050961186.1|916090_916294_+	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	98.5	6.1e-32
WP_050961187.1|916481_917273_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDX0	Staphylococcus_phage	99.2	7.2e-145
WP_000187184.1|917273_917498_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_025920885.1|917537_917987_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	99.3	6.7e-79
WP_000977378.1|918000_918222_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000066013.1|918214_918382_+	DUF1270 domain-containing protein	NA	S4V7J2	Staphylococcus_phage	96.4	4.0e-21
WP_033843163.1|918382_918703_+	hypothetical protein	NA	S4V968	Staphylococcus_phage	99.1	2.4e-54
WP_000291075.1|918796_919057_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000802315.1|919064_919301_+	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	100.0	2.7e-39
WP_000002513.1|919293_919773_+	siphovirus Gp157 family protein	NA	D2JGK0	Staphylococcus_phage	100.0	5.3e-82
WP_001288247.1|919772_920546_+	AAA family ATPase	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
WP_050961188.1|920576_921131_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	99.5	2.2e-100
WP_050961189.1|921143_921809_+	hypothetical protein	NA	Q4ZDY3	Staphylococcus_virus	98.2	7.7e-124
WP_050961190.1|921808_922591_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	99.2	4.1e-140
WP_050961191.1|922562_923378_+	phage replisome organizer N-terminal domain-containing protein	NA	Q4ZAS2	Staphylococcus_virus	96.7	8.9e-114
WP_050961192.1|923387_924167_+	ATP-binding protein	NA	Q6R838	Staphylococcus_virus	98.8	5.1e-143
WP_000237153.1|924160_924322_+	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_001123688.1|924334_924556_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031898212.1|924565_924973_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	97.8	5.5e-72
WP_031898213.1|924972_925158_+	DUF3113 family protein	NA	A0A0H3U473	Staphylococcus_phage	96.7	6.0e-26
WP_050961193.1|925158_925776_+	hypothetical protein	NA	A0A059T7P3	Staphylococcus_phage	99.0	2.8e-83
WP_050961194.1|925776_926025_+	hypothetical protein	NA	S4V683	Staphylococcus_phage	98.8	1.6e-42
WP_000693615.1|926038_926425_+	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
WP_050961195.1|926612_927038_+	hypothetical protein	NA	A0A2I6PE09	Staphylococcus_phage	100.0	4.8e-79
WP_050961196.1|927051_927561_+	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	88.8	2.5e-82
WP_001065056.1|927880_928129_+	DUF1024 family protein	NA	Q4ZCN8	Staphylococcus_virus	100.0	2.4e-38
WP_000185662.1|928121_928652_+	dUTP diphosphatase	NA	B2ZYX2	Staphylococcus_phage	100.0	1.9e-96
WP_031764620.1|928688_928895_+	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	97.1	9.3e-20
WP_031924097.1|928891_929065_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	98.2	1.9e-21
WP_000990005.1|929065_929212_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000058632.1|929226_929646_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_001003271.1|929832_930273_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169945.1|930259_931537_+|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
WP_000921887.1|931547_933083_+|portal	phage portal protein	portal	A1KX25	Staphylococcus_virus	100.0	5.8e-292
WP_001813737.1|933089_934085_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	99.4	3.8e-183
WP_031898218.1|934157_934307_+	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	64.3	3.7e-10
WP_031925652.1|934415_935036_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	92.2	1.2e-67
WP_000438500.1|935049_936024_+|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	99.7	1.8e-182
WP_001114085.1|936045_936333_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208959.1|936341_936674_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_031880723.1|936670_936973_+	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	99.0	7.4e-50
WP_001017815.1|936972_937320_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188640.1|937331_937715_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	1.0e-67
WP_031898198.1|937733_938315_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	97.9	3.5e-104
WP_031898197.1|938376_938742_+|tail	tail assembly protein	tail	A0A0F6N4J9	Staphylococcus_phage	99.2	6.2e-59
WP_001599101.1|938771_939116_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	7.2e-57
WP_077445412.1|939132_942600_+	hypothetical protein	NA	A0EWM3	Staphylococcus_virus	99.3	1.7e-246
WP_031898192.1|942612_943560_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	8.0e-183
WP_000156414.1|943568_945470_+|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	97.9	0.0e+00
WP_050961198.1|945484_947395_+	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.2	0.0e+00
WP_050961199.1|947394_949218_+|plate	phage baseplate upper protein	plate	B1H3M3	Staphylococcus_phage	99.7	0.0e+00
WP_031844790.1|949217_949595_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	99.2	7.6e-60
WP_000782200.1|949598_949772_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|949811_950111_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_050961200.1|950247_952146_+	glucosaminidase domain-containing protein	NA	A1KX46	Staphylococcus_virus	98.9	0.0e+00
WP_031890881.1|952158_953397_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	96.6	3.3e-205
952496:952515	attR	CAAACTTTTCTTTCAATATC	NA	NA	NA	NA
WP_031890882.1|953402_953798_+	hypothetical protein	NA	A0A0E3XBL9	Staphylococcus_phage	99.2	6.1e-68
WP_000354119.1|953853_954291_+|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	100.0	1.1e-73
WP_050961201.1|954271_955717_+	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	98.3	7.2e-292
>prophage 4
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	1112462	1120935	2915433		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1112462_1112945_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1112931_1114056_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1114059_1114764_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1114763_1115027_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1115028_1115700_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1115692_1117882_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1117860_1119345_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1119337_1120366_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1120368_1120935_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	1562703	1648239	2915433	portal,protease,head,capsid,tRNA,plate,holin,tail,terminase,integrase	Staphylococcus_phage(84.21%)	106	1599066:1599086	1648244:1648264
WP_000858789.1|1562703_1563996_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1564317_1567011_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1567034_1568006_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1567992_1569195_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1569199_1570342_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1570582_1570900_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1571236_1571917_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1571988_1572576_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1572565_1573141_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1573154_1574399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1574405_1575704_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1575713_1576778_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1576803_1577970_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1578355_1578556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1578764_1579214_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1579305_1580265_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1580266_1580992_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1580994_1581567_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1581997_1582270_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1582440_1583439_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|1583455_1584766_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1584987_1586163_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1586419_1586611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1586727_1586844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1586874_1587534_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1587610_1588579_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1588693_1589680_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1589840_1589957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1590081_1591542_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1591694_1593074_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1593063_1594017_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1594124_1594373_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1594478_1595024_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1595302_1595422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1595620_1596535_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1596549_1596756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1596748_1597687_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1597743_1598661_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1598751_1598937_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1599066:1599086	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1599185_1600169_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1600164_1601103_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1601492_1602947_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1602957_1603260_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1603395_1603695_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000868795.1|1604014_1604512_+	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
WP_000163792.1|1604583_1606536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001159903.1|1606542_1606779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000916020.1|1607025_1607190_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1607182_1607572_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1607571_1609038_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1609037_1610948_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1610963_1611254_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1611253_1612837_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1612845_1613670_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1613669_1619870_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1619883_1620042_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1620083_1620434_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1620491_1620947_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1621038_1621680_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1621714_1622110_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1622110_1622512_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1622508_1622841_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1622852_1623131_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1623199_1624363_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1624374_1625148_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1625131_1626370_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1626374_1628066_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1628055_1628361_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1628487_1628802_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1628958_1629396_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1629408_1630776_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1630756_1631047_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1631180_1631279_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1631387_1633835_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1634122_1634323_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1634390_1634543_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1634539_1634926_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1634918_1635155_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1635147_1635351_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1635347_1635554_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1635590_1636127_-	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1636119_1636368_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1636382_1636625_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1636639_1636840_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1636842_1637100_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1637099_1637501_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1637500_1637686_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1637698_1639651_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1639718_1640276_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1640301_1641468_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1641464_1641827_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1641840_1642101_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1642105_1642408_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1642400_1642718_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1642983_1643247_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1643271_1643487_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1643533_1643773_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001001356.1|1643769_1643946_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|1644029_1644221_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1644381_1644711_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|1644723_1645185_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|1645202_1645637_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1645665_1646061_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1646150_1646297_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1646293_1646908_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1647033_1648239_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
1648244:1648264	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
>prophage 6
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	1709057	1717369	2915433	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1709057_1709843_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1709968_1710859_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1710868_1712215_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1712328_1713429_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1713431_1714109_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1714239_1715346_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1715569_1717369_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	1786506	1795549	2915433	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1786506_1787025_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1787046_1789320_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1789522_1791802_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1792076_1792337_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1792355_1793495_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1793517_1794543_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1794544_1795549_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	1921010	2000342	2915433	tRNA,transposase,protease	Staphylococcus_phage(94.83%)	74	NA	NA
WP_001050549.1|1921010_1927571_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1927896_1928208_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1928229_1930647_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1930934_1932116_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1932225_1933179_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1933175_1933739_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1933858_1934260_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1935838_1936666_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1936668_1936788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1936899_1937901_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1938022_1938487_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1938499_1939681_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1939691_1940324_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1940330_1941374_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1941854_1943357_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1943879_1944194_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1944193_1945486_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1945503_1945899_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1946193_1947048_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_077445421.1|1947323_1947548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1947746_1948217_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1948329_1948773_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1948759_1949203_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1949498_1950134_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096459.1|1950573_1951287_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1951546_1951849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1952104_1952470_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1952466_1952820_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1954902_1955736_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1955947_1956856_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1956980_1958174_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1958544_1960137_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000639100.1|1960272_1960674_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_002868962.1|1961132_1961879_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1961883_1962357_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1962422_1962680_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1962676_1963678_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1963682_1965161_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1965319_1965775_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1966077_1966728_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1966808_1967804_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000627551.1|1968546_1968891_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1968988_1969540_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1969757_1970399_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1970512_1970698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1970699_1970876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1970886_1971270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1971873_1972017_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1972219_1972315_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1972437_1972539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1972886_1973264_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1973784_1977897_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1978746_1979946_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1979938_1981495_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1981658_1981793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1981857_1982577_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1982727_1983444_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1983545_1983653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1983601_1984321_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1984441_1985161_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1985218_1985941_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1986065_1986773_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1987736_1988303_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1988776_1989475_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1989471_1990233_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1990229_1990922_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1990944_1992318_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1992327_1992846_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1992861_1994106_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1994098_1997092_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1997156_1997300_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1998036_1998180_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1998421_1999405_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1999406_2000342_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 9
NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2915433	2085479	2181915	2915433	portal,protease,head,capsid,tRNA,holin,tail,terminase,integrase	Staphylococcus_phage(91.03%)	117	2146906:2146923	2171837:2171854
WP_000027928.1|2085479_2086937_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2086938_2087241_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957015.1|2087607_2089146_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2089234_2090434_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2090446_2092450_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2092453_2094646_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272069.1|2094642_2095335_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2095506_2095809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2095917_2097213_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2098073_2099240_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2099270_2099597_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2099888_2100062_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2100042_2100645_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2100915_2101737_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2101729_2103199_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2103382_2104459_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2104478_2105273_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2105344_2105452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|2105462_2107025_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2107229_2108327_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2108698_2109259_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2109311_2110241_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2110435_2110609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2110660_2112040_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2112159_2113188_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2113457_2113859_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2114431_2114605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2115055_2116096_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2116152_2116995_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2116991_2117549_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2117608_2118133_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2118254_2118818_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2118883_2119624_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2119623_2120496_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2120492_2121173_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2121173_2122070_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2122066_2122447_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2122710_2122887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2123129_2123228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2123427_2124714_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_050961220.1|2125338_2127093_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2128050_2128230_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2128540_2128801_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2128853_2129204_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2129888_2130338_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2131417_2131909_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2132099_2132855_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2132866_2133121_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2133172_2133280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2133332_2133509_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2133658_2133955_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2134012_2134300_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2134346_2134499_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2134488_2138274_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2138289_2139774_-|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001549166.1|2139770_2144300_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001549167.1|2144356_2144494_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096354.1|2144544_2144895_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2144944_2145184_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2145210_2145855_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2145858_2146263_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2146259_2146664_-	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2146660_2147023_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2146906:2146923	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2147006_2147291_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2147280_2147565_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2147584_2148730_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2148753_2149491_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2149474_2150662_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2150677_2152339_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2152335_2152680_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2152809_2153109_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2153340_2153757_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2153784_2153985_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2153984_2154134_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2154130_2154517_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2154513_2154720_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2154716_2154962_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2154998_2155532_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2155524_2155767_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2155756_2155993_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2155985_2156357_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2156365_2156608_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2156611_2156980_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2156992_2157397_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2157405_2157624_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2157630_2158524_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_050961221.1|2158553_2159024_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	99.4	2.8e-80
WP_071665632.1|2159024_2159642_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2159722_2160643_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2160644_2162588_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2162596_2162860_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2162868_2163129_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2163168_2163429_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2163523_2163685_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2163681_2164002_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2164060_2164291_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001001356.1|2164287_2164464_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001148642.1|2164479_2165232_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2165282_2165612_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2165600_2165816_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2165831_2166095_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2166091_2166265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2166227_2166941_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2166956_2167889_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2167894_2168236_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2168439_2168622_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2168699_2169413_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2169603_2170641_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|2171759_2172776_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2171837:2171854	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2172797_2173853_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|2174287_2175511_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|2175882_2176728_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2176789_2177701_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2177861_2179169_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2180021_2180465_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2180629_2181007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2181324_2181915_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
>prophage 1
NZ_CP014440	Staphylococcus aureus strain USA300-SUR22 plasmid pUSA04-1-SUR22, complete sequence	27079	0	11744	27079	transposase	Streptococcus_phage(50.0%)	12	NA	NA
WP_000627289.1|1237_1768_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|1860_2655_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001105991.1|3670_4345_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001037130.1|4606_4792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000690637.1|5014_5593_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_000182645.1|5856_6237_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096381.1|6226_7984_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733287.1|8090_8936_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.0	5.7e-31
WP_000418035.1|9461_9881_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000481279.1|10004_10976_+	oxidoreductase	NA	NA	NA	NA	NA
WP_001791613.1|11147_11240_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119690.1|11396_11744_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
>prophage 2
NZ_CP014440	Staphylococcus aureus strain USA300-SUR22 plasmid pUSA04-1-SUR22, complete sequence	27079	18043	25893	27079	transposase	Staphylococcus_phage(40.0%)	7	NA	NA
WP_000797248.1|18043_18229_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_001049146.1|18233_18572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000583528.1|18828_19437_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_000196697.1|19922_20822_-	Mph(C) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_000438874.1|20920_22387_-	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.7	6.6e-67
WP_001105960.1|22860_23535_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000793446.1|24963_25893_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
