assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	1	428872-428972	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP014438.1_420444_420654_-,NA|128aa|up_6|NZ_CP014438.1_421478_421862_-,NA|34aa|up_0|NZ_CP014438.1_428096_428198_+,NA|221aa|down_1|NZ_CP014438.1_430062_430725_-,NA|179aa|down_7|NZ_CP014438.1_436816_437353_-	NA|84aa|up_9|NZ_CP014438.1_420154_420406_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP014438.1_420444_420654_-	NA	NA|194aa|up_7|NZ_CP014438.1_420831_421413_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP014438.1_421478_421862_-	NA	NA|209aa|up_5|NZ_CP014438.1_422116_422743_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP014438.1_423187_424711_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP014438.1_424726_425296_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP014438.1_425787_426543_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP014438.1_426623_428012_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP014438.1_428096_428198_+	NA	NA|319aa|down_0|NZ_CP014438.1_428988_429945_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP014438.1_430062_430725_-	NA	NA|136aa|down_2|NZ_CP014438.1_430867_431275_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP014438.1_431787_432366_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP014438.1_432365_433634_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP014438.1_433671_435138_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP014438.1_435162_436704_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP014438.1_436816_437353_-	NA	NA|235aa|down_8|NZ_CP014438.1_437745_438450_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP014438.1_438848_439121_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	2	668031-668123	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP014438.1_664515_664623_+,NA|169aa|down_4|NZ_CP014438.1_671870_672377_+,NA|239aa|down_5|NZ_CP014438.1_672538_673255_+	NA|313aa|up_9|NZ_CP014438.1_658717_659656_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP014438.1_659866_660403_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP014438.1_660571_661048_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP014438.1_661087_662383_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP014438.1_662410_662932_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP014438.1_663430_664441_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP014438.1_664515_664623_+	NA	NA|139aa|up_2|NZ_CP014438.1_664715_665132_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP014438.1_665128_666790_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP014438.1_667177_667813_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP014438.1_668191_669079_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP014438.1_669226_670177_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP014438.1_670231_670951_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP014438.1_670934_671735_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP014438.1_671870_672377_+	NA	NA|239aa|down_5|NZ_CP014438.1_672538_673255_+	NA	NA|263aa|down_6|NZ_CP014438.1_673423_674212_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP014438.1_674462_674837_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP014438.1_676552_677089_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP014438.1_677069_677573_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	3	843841-843926	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	843871-843896|843871-843896|843871-843896|843871-843896|843871-843896	NZ_CP014438.1_806833-806808|NZ_CP014438.1_2872899-2872924|NZ_CP014438.1_2872955-2872980|NZ_CP014438.1_806889-806864|NZ_CP014438.1_993565-993540	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP014438.1_831093_831933_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP014438.1_832106_832757_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP014438.1_832753_832990_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP014438.1_833258_835244_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP014438.1_835251_838098_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP014438.1_838759_839692_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP014438.1_839697_840537_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP014438.1_840544_841030_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP014438.1_841037_842477_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP014438.1_842543_843479_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP014438.1_844358_845270_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP014438.1_845266_846262_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP014438.1_846371_847316_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP014438.1_847889_848477_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP014438.1_848719_849622_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP014438.1_850323_850953_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP014438.1_851712_852726_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP014438.1_852778_853789_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP014438.1_853927_855118_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP014438.1_855239_856001_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	4	887169-887250	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	887193-887226|887193-887226	NZ_CP014438.1_1419772-1419739|NZ_CP014438.1_1508931-1508964	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP014438.1_880272_880854_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP014438.1_880926_881544_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP014438.1_881698_882193_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP014438.1_882591_883014_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP014438.1_883161_883878_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP014438.1_883960_884500_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP014438.1_884649_884970_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP014438.1_885113_885470_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP014438.1_885627_886008_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP014438.1_886186_887065_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP014438.1_887806_888193_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP014438.1_888185_888482_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP014438.1_888731_889757_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP014438.1_889749_890445_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP014438.1_890462_891284_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP014438.1_891426_892647_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP014438.1_892734_893463_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP014438.1_893486_894215_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP014438.1_894231_894690_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP014438.1_894701_895034_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	5	993566-993848	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	993596-993621|993596-993621|993596-993621|993596-993621|993710-993735|993710-993735	NZ_CP014438.1_993540-993565|NZ_CP014438.1_806808-806833|NZ_CP014438.1_2872924-2872899|NZ_CP014438.1_2872980-2872955|NZ_CP014438.1_843952-843927|NZ_CP014438.1_390205-390230	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP014438.1_982454_983951_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP014438.1_983943_984285_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP014438.1_984284_984713_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP014438.1_984705_987111_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP014438.1_987241_987625_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP014438.1_987688_988282_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP014438.1_988697_989075_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP014438.1_989436_990564_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP014438.1_990871_992062_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP014438.1_992170_993415_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP014438.1_993917_994847_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP014438.1_995088_996468_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP014438.1_996457_997663_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP014438.1_998013_999345_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP014438.1_999669_1000245_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP014438.1_1000249_1000774_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP014438.1_1000789_1001365_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP014438.1_1001524_1005001_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP014438.1_1005001_1008655_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP014438.1_1008820_1009723_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	6	1127238-1127325	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP014438.1_1127334_1127469_-,NA|432aa|down_1|NZ_CP014438.1_1127620_1128916_+	NA|224aa|up_9|NZ_CP014438.1_1115028_1115700_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP014438.1_1115692_1117882_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP014438.1_1117860_1119345_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP014438.1_1119337_1120366_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP014438.1_1120368_1120935_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP014438.1_1120949_1122428_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP014438.1_1122449_1123697_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP014438.1_1123961_1124768_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP014438.1_1124760_1126161_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP014438.1_1126175_1126751_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP014438.1_1127334_1127469_-	NA	NA|432aa|down_1|NZ_CP014438.1_1127620_1128916_+	NA	NA|391aa|down_2|NZ_CP014438.1_1129340_1130513_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP014438.1_1130566_1131109_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP014438.1_1131262_1131529_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP014438.1_1131531_1133250_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP014438.1_1133486_1133720_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP014438.1_1133917_1135279_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP014438.1_1135275_1136295_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP014438.1_1136427_1137090_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	7	2072557-2072635	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2072580-2072612|2072580-2072612|2072580-2072612|2072580-2072612|2072580-2072612|2072580-2072612	NZ_CP014438.1_843907-843939|NZ_CP014438.1_1211601-1211569|NZ_CP014438.1_1419726-1419694|NZ_CP014438.1_1737495-1737527|NZ_CP014438.1_2707549-2707581|NZ_CP014438.1_1508977-1509009	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP014438.1_2066751_2067027_+,NA|129aa|up_1|NZ_CP014438.1_2071012_2071399_-,NA|138aa|down_1|NZ_CP014438.1_2074377_2074791_-,NA|37aa|down_2|NZ_CP014438.1_2074819_2074930_-,NA|31aa|down_6|NZ_CP014438.1_2077935_2078028_-	NA|419aa|up_9|NZ_CP014438.1_2064674_2065931_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP014438.1_2065933_2066134_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP014438.1_2066280_2066745_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP014438.1_2066751_2067027_+	NA	NA|406aa|up_5|NZ_CP014438.1_2067304_2068522_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP014438.1_2068637_2069267_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP014438.1_2069256_2070300_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP014438.1_2070296_2070998_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP014438.1_2071012_2071399_-	NA	NA|253aa|up_0|NZ_CP014438.1_2071615_2072374_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP014438.1_2072901_2073888_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP014438.1_2074377_2074791_-	NA	NA|37aa|down_2|NZ_CP014438.1_2074819_2074930_-	NA	NA|244aa|down_3|NZ_CP014438.1_2075015_2075747_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP014438.1_2075748_2077062_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP014438.1_2077353_2077854_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP014438.1_2077935_2078028_-	NA	DEDDh|185aa|down_7|NZ_CP014438.1_2078242_2078797_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP014438.1_2078864_2079935_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP014438.1_2080181_2080712_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	8	2307680-2307830	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP014438.1_2302551_2302782_-,NA|364aa|up_0|NZ_CP014438.1_2306570_2307662_+,NA|35aa|down_0|NZ_CP014438.1_2308161_2308266_-,NA|31aa|down_2|NZ_CP014438.1_2310377_2310470_+	NA|237aa|up_9|NZ_CP014438.1_2298161_2298872_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP014438.1_2298992_2299436_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP014438.1_2299635_2300049_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP014438.1_2300506_2301880_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP014438.1_2302551_2302782_-	NA	NA|313aa|up_4|NZ_CP014438.1_2302812_2303751_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP014438.1_2304185_2304851_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP014438.1_2305002_2305323_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP014438.1_2305324_2306305_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP014438.1_2306570_2307662_+	NA	NA|35aa|down_0|NZ_CP014438.1_2308161_2308266_-	NA	NA|379aa|down_1|NZ_CP014438.1_2308952_2310089_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP014438.1_2310377_2310470_+	NA	NA|286aa|down_3|NZ_CP014438.1_2311174_2312032_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP014438.1_2312099_2312882_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP014438.1_2313113_2314919_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP014438.1_2315599_2317138_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP014438.1_2317172_2319305_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP014438.1_2319316_2319751_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP014438.1_2319750_2320857_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002000825.1_ASM200082v1	NZ_CP014438	Staphylococcus aureus strain USA300-SUR22 chromosome, complete genome	9	2431598-2431791	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2431621-2431653|2431621-2431653|2431621-2431653|2431621-2431653|2431621-2431653|2431677-2431712|2431677-2431712|2431677-2431712|2431677-2431712|2431736-2431768|2431736-2431768|2431736-2431768|2431736-2431768	NZ_CP014438.1_843907-843939|NZ_CP014438.1_1211601-1211569|NZ_CP014438.1_1419726-1419694|NZ_CP014438.1_1508977-1509009|NZ_CP014438.1_2707549-2707581|NZ_CP014438.1_1211548-1211513|NZ_CP014438.1_1915982-1915947|NZ_CP014438.1_1737434-1737469|NZ_CP014438.1_2083383-2083418|NZ_CP014438.1_843907-843939|NZ_CP014438.1_1211601-1211569|NZ_CP014438.1_1419726-1419694|NZ_CP014438.1_2707549-2707581	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP014438.1_2422125_2422290_+,NA|106aa|up_8|NZ_CP014438.1_2422534_2422852_+,NA|84aa|up_5|NZ_CP014438.1_2427976_2428228_+,NA|57aa|up_0|NZ_CP014438.1_2431367_2431538_+,NA	NA|55aa|up_9|NZ_CP014438.1_2422125_2422290_+	NA	NA|106aa|up_8|NZ_CP014438.1_2422534_2422852_+	NA	NA|1056aa|up_7|NZ_CP014438.1_2423038_2426206_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP014438.1_2426322_2427588_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP014438.1_2427976_2428228_+	NA	NA|255aa|up_4|NZ_CP014438.1_2428219_2428984_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP014438.1_2429145_2429586_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP014438.1_2429578_2430790_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP014438.1_2430891_2431242_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP014438.1_2431367_2431538_+	NA	NA|341aa|down_0|NZ_CP014438.1_2431932_2432955_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP014438.1_2432974_2433574_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP014438.1_2433580_2433814_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP014438.1_2433819_2434266_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP014438.1_2434279_2434765_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP014438.1_2434761_2436021_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP014438.1_2436083_2436578_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP014438.1_2436579_2437086_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP014438.1_2437116_2438121_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP014438.1_2438290_2438896_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
