assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002003265.1_ASM200326v1	NZ_CP019687	Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome	1	245525-245753	1,1	PILER-CR,CRISPRCasFinder	no	cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3	WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	 Type I-A?,Type I-B	CCGTTTGATAGTAACACGAGGTGTATTGAAACAG,GTTTGATAGTAACACGAGGTGTATTGAAAC	34,30	0	0	NA	NA	NA:NA	2,3	3	TypeI-A?,TypeI-B	WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	NA|84aa|up_2|NZ_CP019687.1_241616_241868_+,NA|41aa|up_0|NZ_CP019687.1_245034_245157_-,NA|235aa|down_0|NZ_CP019687.1_246099_246804_+,cas8b1|636aa|down_1|NZ_CP019687.1_246824_248732_+,NA|86aa|down_8|NZ_CP019687.1_257334_257592_-	NA|188aa|up_9|NZ_CP019687.1_232609_233173_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|106aa|up_8|NZ_CP019687.1_233387_233705_-	pfam13551, HTH_29, Winged helix-turn helix	NA|396aa|up_7|NZ_CP019687.1_235152_236340_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|389aa|up_6|NZ_CP019687.1_236411_237578_-	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|432aa|up_5|NZ_CP019687.1_237762_239058_-	COG3664, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|349aa|up_4|NZ_CP019687.1_239196_240242_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|338aa|up_3|NZ_CP019687.1_240245_241259_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|84aa|up_2|NZ_CP019687.1_241616_241868_+	NA	NA|89aa|up_1|NZ_CP019687.1_241930_242197_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|41aa|up_0|NZ_CP019687.1_245034_245157_-	NA	NA|235aa|down_0|NZ_CP019687.1_246099_246804_+	NA	cas8b1|636aa|down_1|NZ_CP019687.1_246824_248732_+	NA	cas7b|321aa|down_2|NZ_CP019687.1_248724_249687_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|267aa|down_3|NZ_CP019687.1_249723_250524_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|893aa|down_4|NZ_CP019687.1_250637_253316_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|165aa|down_5|NZ_CP019687.1_253312_253807_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|337aa|down_6|NZ_CP019687.1_253826_254837_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|94aa|down_7|NZ_CP019687.1_254844_255126_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|86aa|down_8|NZ_CP019687.1_257334_257592_-	NA	NA|837aa|down_9|NZ_CP019687.1_257735_260246_-	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase
GCF_002003265.1_ASM200326v1	NZ_CP019687	Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome	2	255304-255596	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3	WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	 Type I-A?,Type I-B	GTTTGACAGTAACACATGGTGTATTGAAACT,GTTTGACAGTAACACATGGTGTATTGAAACT,GTTTGACAGTAACACATGGTGTATTGAAACT	31,31,31	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeI-A?,TypeI-B	WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	NA|41aa|up_8|NZ_CP019687.1_245034_245157_-,NA|235aa|up_7|NZ_CP019687.1_246099_246804_+,cas8b1|636aa|up_6|NZ_CP019687.1_246824_248732_+,NA|86aa|down_0|NZ_CP019687.1_257334_257592_-,NA|111aa|down_5|NZ_CP019687.1_261698_262031_+	NA|89aa|up_9|NZ_CP019687.1_241930_242197_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|41aa|up_8|NZ_CP019687.1_245034_245157_-	NA	NA|235aa|up_7|NZ_CP019687.1_246099_246804_+	NA	cas8b1|636aa|up_6|NZ_CP019687.1_246824_248732_+	NA	cas7b|321aa|up_5|NZ_CP019687.1_248724_249687_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|267aa|up_4|NZ_CP019687.1_249723_250524_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|893aa|up_3|NZ_CP019687.1_250637_253316_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|165aa|up_2|NZ_CP019687.1_253312_253807_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|337aa|up_1|NZ_CP019687.1_253826_254837_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|94aa|up_0|NZ_CP019687.1_254844_255126_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|86aa|down_0|NZ_CP019687.1_257334_257592_-	NA	NA|837aa|down_1|NZ_CP019687.1_257735_260246_-	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	csa3|97aa|down_2|NZ_CP019687.1_260242_260533_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|98aa|down_3|NZ_CP019687.1_260784_261078_-	PRK09907, PRK09907, endoribonuclease MazF	NA|90aa|down_4|NZ_CP019687.1_261110_261380_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|111aa|down_5|NZ_CP019687.1_261698_262031_+	NA	NA|150aa|down_6|NZ_CP019687.1_263918_264368_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|429aa|down_7|NZ_CP019687.1_264601_265888_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|196aa|down_8|NZ_CP019687.1_265859_266447_-	pfam02441, Flavoprotein, Flavoprotein	NA|457aa|down_9|NZ_CP019687.1_266424_267795_-	TIGR04334, rSAM_Clo7bot, radical SAM/SPASM domain Clo7bot peptide maturase
GCF_002003265.1_ASM200326v1	NZ_CP019687	Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome	3	1191583-1191948	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no		WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	Orphan	ATTTCAATCCACGCATCCGCGTAGGATGCGAC,ATTTCAATCCACGCATCCGCGTAGGATGCGACA,ATTTCAATCCACGCATCCGCGTAGGATGCGACA	32,33,33	2	2	1191814-1191849|1191815-1191849	NZ_CP019687.1_575220-575185|NZ_CP019687.1_575219-575185	I-C:I-C:I-C	5,5,4	5	Orphan	WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	NA|51aa|up_7|NZ_CP019687.1_1186186_1186339_-,NA|65aa|down_1|NZ_CP019687.1_1195226_1195421_-,NA|200aa|down_2|NZ_CP019687.1_1195449_1196049_-,NA|62aa|down_3|NZ_CP019687.1_1196036_1196222_-	NA|983aa|up_9|NZ_CP019687.1_1182049_1184998_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|76aa|up_8|NZ_CP019687.1_1185542_1185770_+	pfam13131, DUF3951, Protein of unknown function (DUF3951)	NA|51aa|up_7|NZ_CP019687.1_1186186_1186339_-	NA	NA|151aa|up_6|NZ_CP019687.1_1186596_1187049_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|119aa|up_5|NZ_CP019687.1_1188415_1188772_+	cd10451, GIY-YIG_LuxR_like, GIY-YIG domain of LuxR and ArsR family transcriptional regulators, and uncharacterized hypothetical proteins found in bacteria	NA|248aa|up_4|NZ_CP019687.1_1189067_1189811_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|100aa|up_3|NZ_CP019687.1_1189901_1190201_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|107aa|up_2|NZ_CP019687.1_1190258_1190579_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|93aa|up_1|NZ_CP019687.1_1190665_1190944_+	pfam13276, HTH_21, HTH-like domain	NA|132aa|up_0|NZ_CP019687.1_1191064_1191460_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|211aa|down_0|NZ_CP019687.1_1192452_1193085_-	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family	NA|65aa|down_1|NZ_CP019687.1_1195226_1195421_-	NA	NA|200aa|down_2|NZ_CP019687.1_1195449_1196049_-	NA	NA|62aa|down_3|NZ_CP019687.1_1196036_1196222_-	NA	NA|131aa|down_4|NZ_CP019687.1_1196433_1196826_-	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family	NA|99aa|down_5|NZ_CP019687.1_1196961_1197258_-	TIGR02904, hypothetical_conserved_protein, spore coat protein YsxE	NA|48aa|down_6|NZ_CP019687.1_1197390_1197534_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|125aa|down_7|NZ_CP019687.1_1197782_1198157_-	PRK02866, PRK02866, cyanate hydratase; Validated	NA|141aa|down_8|NZ_CP019687.1_1198276_1198699_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_9|NZ_CP019687.1_1198743_1199490_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCF_002003265.1_ASM200326v1	NZ_CP019687	Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome	4	1194196-1194634	3,4,4	CRT,CRISPRCasFinder,PILER-CR	no		WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	Orphan	ATTTCAATCCACGNCATCCGCGTAGGATGCGAC,ATTTCAATCCACGCATCCGCGTAGGATGCGAC,ATTTCAATCCACGCATCCGCGTAGGATGCGAC	33,32,32	0	0	NA	NA	NA:I-C:I-C	6,5,4	6	Orphan	WYL,DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	NA|51aa|up_8|NZ_CP019687.1_1186186_1186339_-,NA|65aa|down_0|NZ_CP019687.1_1195226_1195421_-,NA|200aa|down_1|NZ_CP019687.1_1195449_1196049_-,NA|62aa|down_2|NZ_CP019687.1_1196036_1196222_-	NA|76aa|up_9|NZ_CP019687.1_1185542_1185770_+	pfam13131, DUF3951, Protein of unknown function (DUF3951)	NA|51aa|up_8|NZ_CP019687.1_1186186_1186339_-	NA	NA|151aa|up_7|NZ_CP019687.1_1186596_1187049_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|119aa|up_6|NZ_CP019687.1_1188415_1188772_+	cd10451, GIY-YIG_LuxR_like, GIY-YIG domain of LuxR and ArsR family transcriptional regulators, and uncharacterized hypothetical proteins found in bacteria	NA|248aa|up_5|NZ_CP019687.1_1189067_1189811_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|100aa|up_4|NZ_CP019687.1_1189901_1190201_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|107aa|up_3|NZ_CP019687.1_1190258_1190579_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|93aa|up_2|NZ_CP019687.1_1190665_1190944_+	pfam13276, HTH_21, HTH-like domain	NA|132aa|up_1|NZ_CP019687.1_1191064_1191460_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|211aa|up_0|NZ_CP019687.1_1192452_1193085_-	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family	NA|65aa|down_0|NZ_CP019687.1_1195226_1195421_-	NA	NA|200aa|down_1|NZ_CP019687.1_1195449_1196049_-	NA	NA|62aa|down_2|NZ_CP019687.1_1196036_1196222_-	NA	NA|131aa|down_3|NZ_CP019687.1_1196433_1196826_-	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family	NA|99aa|down_4|NZ_CP019687.1_1196961_1197258_-	TIGR02904, hypothetical_conserved_protein, spore coat protein YsxE	NA|48aa|down_5|NZ_CP019687.1_1197390_1197534_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|125aa|down_6|NZ_CP019687.1_1197782_1198157_-	PRK02866, PRK02866, cyanate hydratase; Validated	NA|141aa|down_7|NZ_CP019687.1_1198276_1198699_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_8|NZ_CP019687.1_1198743_1199490_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|289aa|down_9|NZ_CP019687.1_1200191_1201058_-	cd13713, PBP2_Cystine_like_1, Substrate binding domain of putative ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold
