assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	1	148425-148574	1	CRISPRCasFinder	no	cas3	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Unclear	AAATATCGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCG	55	0	0	NA	NA	NA	1	1	Unclear	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA,NA	NA|174aa|up_9|NZ_CP016086.1_140493_141015_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|184aa|up_8|NZ_CP016086.1_141452_142004_+	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T	NA|513aa|up_7|NZ_CP016086.1_142113_143652_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|484aa|up_6|NZ_CP016086.1_143668_145120_+	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|92aa|up_5|NZ_CP016086.1_145338_145614_+	cd13831, HU, histone-like DNA-binding protein HU	NA|87aa|up_4|NZ_CP016086.1_145685_145946_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|98aa|up_3|NZ_CP016086.1_146192_146486_+	TIGR02892, conserved_hypothetical_protein, sporulation protein YabP	NA|131aa|up_2|NZ_CP016086.1_146495_146888_+	TIGR02893, Spore_protein_YabQ, spore cortex biosynthesis protein YabQ	NA|98aa|up_1|NZ_CP016086.1_146967_147261_+	pfam04977, DivIC, Septum formation initiator	NA|135aa|up_0|NZ_CP016086.1_147417_147822_+	PRK05807, PRK05807, RNA-binding protein S1	NA|799aa|down_0|NZ_CP016086.1_149457_151854_+	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E	NA|470aa|down_1|NZ_CP016086.1_152062_153472_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|180aa|down_2|NZ_CP016086.1_153473_154013_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|603aa|down_3|NZ_CP016086.1_154084_155893_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|557aa|down_4|NZ_CP016086.1_156370_158041_+	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|272aa|down_5|NZ_CP016086.1_158170_158986_+	PRK13318, PRK13318, type III pantothenate kinase	NA|322aa|down_6|NZ_CP016086.1_158960_159926_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|161aa|down_7|NZ_CP016086.1_160376_160859_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|502aa|down_8|NZ_CP016086.1_160872_162378_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|464aa|down_9|NZ_CP016086.1_163758_165150_+	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	2	1658346-1658428	2	CRISPRCasFinder	no	DEDDh	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Unclear	ATGGATATATGAAAACAGGTTGG	23	0	0	NA	NA	NA	1	1	Orphan	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA|109aa|up_8|NZ_CP016086.1_1646970_1647297_-,NA|378aa|up_0|NZ_CP016086.1_1656673_1657807_+,NA|104aa|down_0|NZ_CP016086.1_1659047_1659359_+	NA|525aa|up_9|NZ_CP016086.1_1645064_1646639_+	cd13609, PBP2_Opu_like_1, Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold	NA|109aa|up_8|NZ_CP016086.1_1646970_1647297_-	NA	NA|181aa|up_7|NZ_CP016086.1_1647333_1647876_-	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|180aa|up_6|NZ_CP016086.1_1648145_1648685_+	cd02139, nitroreductase, nitroreductase family protein	NA|218aa|up_5|NZ_CP016086.1_1648853_1649507_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|358aa|up_4|NZ_CP016086.1_1649724_1650798_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|783aa|up_3|NZ_CP016086.1_1651226_1653575_+	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA|266aa|up_2|NZ_CP016086.1_1654110_1654908_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|391aa|up_1|NZ_CP016086.1_1655165_1656338_-	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8	NA|378aa|up_0|NZ_CP016086.1_1656673_1657807_+	NA	NA|104aa|down_0|NZ_CP016086.1_1659047_1659359_+	NA	NA|354aa|down_1|NZ_CP016086.1_1659497_1660559_+	cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like	NA|413aa|down_2|NZ_CP016086.1_1660723_1661962_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|625aa|down_3|NZ_CP016086.1_1662164_1664039_-	TIGR01702, Carbon_monoxide_dehydrogenase, carbon-monoxide dehydrogenase, catalytic subunit	NA|138aa|down_4|NZ_CP016086.1_1664155_1664569_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	DEDDh|252aa|down_5|NZ_CP016086.1_1665030_1665786_-	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	NA|177aa|down_6|NZ_CP016086.1_1666065_1666596_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|468aa|down_7|NZ_CP016086.1_1667596_1669000_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|462aa|down_8|NZ_CP016086.1_1669400_1670786_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|279aa|down_9|NZ_CP016086.1_1671369_1672206_+	PRK01060, PRK01060, endonuclease IV; Provisional
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	3	2251840-2252981	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	RT,cas6,cas8b1,cas7b,cas5,cas3	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Type I-B	GTTGAAGATTAACATTATATGTTTTGAAAT,GTTGAAGATTAACATTATATGTTTTGAAAT,GTTGAAGATTAACATTATATGTTTTGAAAT	30,30,30	1	1	2252524-2252559	NZ_CP016086.1_3307883-3307918	NA:NA:NA	17,17,17	17	TypeI-B	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA|603aa|up_9|NZ_CP016086.1_2239270_2241079_+,NA|183aa|down_2|NZ_CP016086.1_2256892_2257441_+	NA|603aa|up_9|NZ_CP016086.1_2239270_2241079_+	NA	RT|502aa|up_8|NZ_CP016086.1_2241075_2242581_+	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|342aa|up_7|NZ_CP016086.1_2243168_2244194_+	pfam12395, DUF3658, Protein of unknown function	NA|176aa|up_6|NZ_CP016086.1_2244412_2244940_+	TIGR02954, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma-70 factor, TIGR02954 family	NA|331aa|up_5|NZ_CP016086.1_2244962_2245955_+	pfam13786, DUF4179, Domain of unknown function (DUF4179)	NA|262aa|up_4|NZ_CP016086.1_2246237_2247023_+	pfam00457, Glyco_hydro_11, Glycosyl hydrolases family 11	cas6|232aa|up_3|NZ_CP016086.1_2247391_2248087_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|593aa|up_2|NZ_CP016086.1_2248101_2249880_+	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas7b|328aa|up_1|NZ_CP016086.1_2249872_2250856_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|261aa|up_0|NZ_CP016086.1_2250858_2251641_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|859aa|down_0|NZ_CP016086.1_2253033_2255610_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|279aa|down_1|NZ_CP016086.1_2255770_2256607_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|183aa|down_2|NZ_CP016086.1_2256892_2257441_+	NA	NA|195aa|down_3|NZ_CP016086.1_2257533_2258118_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|187aa|down_4|NZ_CP016086.1_2259493_2260054_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|146aa|down_5|NZ_CP016086.1_2260389_2260827_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|454aa|down_6|NZ_CP016086.1_2260911_2262273_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|269aa|down_7|NZ_CP016086.1_2262848_2263655_+	smart00138, MeTrc, Methyltransferase, chemotaxis proteins	NA|684aa|down_8|NZ_CP016086.1_2263674_2265726_+	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|349aa|down_9|NZ_CP016086.1_2265760_2266807_+	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	4	2817480-2819664	2,2,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6,c2c9_V-U4	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Type I-B	NNNNNNATTTAAATACATCTCATGTTAATGTTAATC,ATTTAAATACATCTCATGTTAATGTTAATC,ATTTAAATACATCTCATGTTAATGTTAATC	36,30,30	0	0	NA	NA	II-B:II-B:II-B	33,32,32	33	TypeI-B	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA,NA	NA|313aa|up_9|NZ_CP016086.1_2804384_2805323_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|268aa|up_8|NZ_CP016086.1_2805392_2806196_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|333aa|up_7|NZ_CP016086.1_2806212_2807211_+	pfam11728, ArAE_1_C, Putative aromatic acid exporter C-terminal domain	NA|530aa|up_6|NZ_CP016086.1_2807731_2809321_+	PRK09431, asnB, asparagine synthetase B; Provisional	NA|636aa|up_5|NZ_CP016086.1_2809518_2811426_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_4|NZ_CP016086.1_2811993_2812602_-	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|574aa|up_3|NZ_CP016086.1_2813211_2814933_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|172aa|up_2|NZ_CP016086.1_2815162_2815678_-	pfam08020, DUF1706, Protein of unknown function (DUF1706)	NA|174aa|up_1|NZ_CP016086.1_2815705_2816227_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|243aa|up_0|NZ_CP016086.1_2816357_2817086_-	pfam07007, LprI, Lysozyme inhibitor LprI	cas2|97aa|down_0|NZ_CP016086.1_2819839_2820130_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|333aa|down_1|NZ_CP016086.1_2820129_2821128_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|165aa|down_2|NZ_CP016086.1_2821137_2821632_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|864aa|down_3|NZ_CP016086.1_2821814_2824406_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|267aa|down_4|NZ_CP016086.1_2824484_2825285_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|326aa|down_5|NZ_CP016086.1_2825288_2826266_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|593aa|down_6|NZ_CP016086.1_2826265_2828044_-	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas6|231aa|down_7|NZ_CP016086.1_2828059_2828752_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|525aa|down_8|NZ_CP016086.1_2829881_2831456_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|134aa|down_9|NZ_CP016086.1_2832031_2832433_-	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	5	4329272-4329372	5	CRISPRCasFinder	no		csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Orphan	TAGCACATTATAATCTTCTCACATT	25	0	0	NA	NA	NA	1	1	Orphan	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA|143aa|up_1|NZ_CP016086.1_4325274_4325703_+,NA|176aa|down_3|NZ_CP016086.1_4333111_4333639_-	NA|74aa|up_9|NZ_CP016086.1_4317167_4317389_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|70aa|up_8|NZ_CP016086.1_4317402_4317612_-	pfam04023, FeoA, FeoA domain	NA|355aa|up_7|NZ_CP016086.1_4318318_4319383_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|338aa|up_6|NZ_CP016086.1_4319914_4320928_-	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|81aa|up_5|NZ_CP016086.1_4321485_4321728_-	TIGR04540, CLB_0814_fam, conserved hypothetical protein	NA|144aa|up_4|NZ_CP016086.1_4321923_4322355_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|349aa|up_3|NZ_CP016086.1_4322635_4323682_-	PRK14133, PRK14133, DNA polymerase IV; Provisional	NA|318aa|up_2|NZ_CP016086.1_4323918_4324872_-	pfam13170, DUF4003, Protein of unknown function (DUF4003)	NA|143aa|up_1|NZ_CP016086.1_4325274_4325703_+	NA	NA|851aa|up_0|NZ_CP016086.1_4326468_4329021_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|549aa|down_0|NZ_CP016086.1_4329470_4331117_-	PRK14869, PRK14869, putative manganese-dependent inorganic diphosphatase	NA|260aa|down_1|NZ_CP016086.1_4331343_4332123_-	PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed	NA|259aa|down_2|NZ_CP016086.1_4332139_4332916_-	PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed	NA|176aa|down_3|NZ_CP016086.1_4333111_4333639_-	NA	NA|243aa|down_4|NZ_CP016086.1_4333690_4334419_-	TIGR02479, RNA_polymerase_sigma_factor_WhiG, RNA polymerase sigma factor, FliA/WhiG family	NA|214aa|down_5|NZ_CP016086.1_4334457_4335099_-	COG5581, COG5581, c-di-GMP-binding protein [Signal transduction mechanisms]	NA|291aa|down_6|NZ_CP016086.1_4335110_4335983_-	cd02038, FlhG-like, MinD-like ATPase FlhG	NA|431aa|down_7|NZ_CP016086.1_4335976_4337269_-	PRK05703, flhF, flagellar biosynthesis protein FlhF	NA|689aa|down_8|NZ_CP016086.1_4337269_4339336_-	PRK06012, flhA, flagellar type III secretion system protein FlhA	NA|614aa|down_9|NZ_CP016086.1_4339444_4341286_-	PRK12772, PRK12772, fused FliR family export protein/FlhB family type III secretion system protein
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	6	4535976-4536149	3	PILER-CR	no		csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Orphan	CCTATACTTGTTATACTGTTTGGGATTGTTATTGAC	36	0	0	NA	NA	NA	2	2	Orphan	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA,NA|260aa|down_6|NZ_CP016086.1_4545849_4546629_-	NA|265aa|up_9|NZ_CP016086.1_4520851_4521646_-	pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal transduction	NA|272aa|up_8|NZ_CP016086.1_4521697_4522513_-	cd01948, EAL, EAL domain	NA|200aa|up_7|NZ_CP016086.1_4522719_4523319_+	pfam00589, Phage_integrase, Phage integrase family	NA|119aa|up_6|NZ_CP016086.1_4523435_4523792_-	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|138aa|up_5|NZ_CP016086.1_4523917_4524331_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|380aa|up_4|NZ_CP016086.1_4524546_4525686_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|523aa|up_3|NZ_CP016086.1_4525772_4527341_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|259aa|up_2|NZ_CP016086.1_4527451_4528228_-	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase	NA|817aa|up_1|NZ_CP016086.1_4529149_4531600_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|45aa|up_0|NZ_CP016086.1_4531696_4531831_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|391aa|down_0|NZ_CP016086.1_4538428_4539601_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	NA|511aa|down_1|NZ_CP016086.1_4539630_4541163_-	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase	NA|249aa|down_2|NZ_CP016086.1_4541626_4542373_-	pfam01564, Spermine_synth, Spermine/spermidine synthase domain	NA|111aa|down_3|NZ_CP016086.1_4542584_4542917_+	TIGR01911, conserved_protein, HesB-like selenoprotein	NA|445aa|down_4|NZ_CP016086.1_4543361_4544696_-	COG3864, COG3864, Uncharacterized protein conserved in bacteria [Function unknown]	NA|361aa|down_5|NZ_CP016086.1_4544749_4545832_-	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|260aa|down_6|NZ_CP016086.1_4545849_4546629_-	NA	NA|264aa|down_7|NZ_CP016086.1_4546719_4547511_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|225aa|down_8|NZ_CP016086.1_4547677_4548352_+	pfam09986, DUF2225, Uncharacterized protein conserved in bacteria (DUF2225)	NA|314aa|down_9|NZ_CP016086.1_4548382_4549324_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	7	4537069-4537393	4	PILER-CR	no		csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Orphan	CGATTCCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCC	49	2	4	4537256-4537275|4537256-4537275|4537325-4537344|4537325-4537344	NZ_CP016086.1_4537049-4537068|NZ_CP016086.1_4537394-4537413|NZ_CP016086.1_4537049-4537068|NZ_CP016086.1_4537394-4537413	NA	4	4	Orphan	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA,NA|260aa|down_6|NZ_CP016086.1_4545849_4546629_-	NA|265aa|up_9|NZ_CP016086.1_4520851_4521646_-	pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal transduction	NA|272aa|up_8|NZ_CP016086.1_4521697_4522513_-	cd01948, EAL, EAL domain	NA|200aa|up_7|NZ_CP016086.1_4522719_4523319_+	pfam00589, Phage_integrase, Phage integrase family	NA|119aa|up_6|NZ_CP016086.1_4523435_4523792_-	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|138aa|up_5|NZ_CP016086.1_4523917_4524331_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|380aa|up_4|NZ_CP016086.1_4524546_4525686_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|523aa|up_3|NZ_CP016086.1_4525772_4527341_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|259aa|up_2|NZ_CP016086.1_4527451_4528228_-	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase	NA|817aa|up_1|NZ_CP016086.1_4529149_4531600_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|45aa|up_0|NZ_CP016086.1_4531696_4531831_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|391aa|down_0|NZ_CP016086.1_4538428_4539601_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	NA|511aa|down_1|NZ_CP016086.1_4539630_4541163_-	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase	NA|249aa|down_2|NZ_CP016086.1_4541626_4542373_-	pfam01564, Spermine_synth, Spermine/spermidine synthase domain	NA|111aa|down_3|NZ_CP016086.1_4542584_4542917_+	TIGR01911, conserved_protein, HesB-like selenoprotein	NA|445aa|down_4|NZ_CP016086.1_4543361_4544696_-	COG3864, COG3864, Uncharacterized protein conserved in bacteria [Function unknown]	NA|361aa|down_5|NZ_CP016086.1_4544749_4545832_-	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|260aa|down_6|NZ_CP016086.1_4545849_4546629_-	NA	NA|264aa|down_7|NZ_CP016086.1_4546719_4547511_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|225aa|down_8|NZ_CP016086.1_4547677_4548352_+	pfam09986, DUF2225, Uncharacterized protein conserved in bacteria (DUF2225)	NA|314aa|down_9|NZ_CP016086.1_4548382_4549324_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	8	4651687-4651779	6	CRISPRCasFinder	no		csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Orphan	TTTATTACATATATAGTTATATATGTA	27	0	0	NA	NA	NA	1	1	Orphan	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA|95aa|up_8|NZ_CP016086.1_4639788_4640073_+,NA|259aa|up_2|NZ_CP016086.1_4647896_4648673_+,NA|263aa|down_1|NZ_CP016086.1_4653673_4654462_-	NA|837aa|up_9|NZ_CP016086.1_4636989_4639500_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|95aa|up_8|NZ_CP016086.1_4639788_4640073_+	NA	NA|321aa|up_7|NZ_CP016086.1_4640328_4641291_+	pfam00688, TGFb_propeptide, TGF-beta propeptide	NA|532aa|up_6|NZ_CP016086.1_4641571_4643167_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|489aa|up_5|NZ_CP016086.1_4643931_4645398_-	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|90aa|up_4|NZ_CP016086.1_4645611_4645881_-	pfam11823, DUF3343, Protein of unknown function (DUF3343)	NA|558aa|up_3|NZ_CP016086.1_4645971_4647645_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|259aa|up_2|NZ_CP016086.1_4647896_4648673_+	NA	NA|199aa|up_1|NZ_CP016086.1_4648947_4649544_+	pfam14879, DUF4489, Domain of unknown function (DUF4489)	NA|580aa|up_0|NZ_CP016086.1_4649928_4651668_-	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]	NA|380aa|down_0|NZ_CP016086.1_4651985_4653125_-	TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein	NA|263aa|down_1|NZ_CP016086.1_4653673_4654462_-	NA	NA|751aa|down_2|NZ_CP016086.1_4654770_4657023_+	PRK01156, PRK01156, chromosome segregation protein; Provisional	NA|325aa|down_3|NZ_CP016086.1_4657460_4658435_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|383aa|down_4|NZ_CP016086.1_4658631_4659780_+	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|349aa|down_5|NZ_CP016086.1_4660211_4661258_-	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|965aa|down_6|NZ_CP016086.1_4661354_4664249_-	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|543aa|down_7|NZ_CP016086.1_4664818_4666447_-	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|706aa|down_8|NZ_CP016086.1_4666827_4668945_-	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|136aa|down_9|NZ_CP016086.1_4669171_4669579_-	pfam01934, DUF86, Protein of unknown function DUF86
GCF_002003285.1_ASM200328v1	NZ_CP016086	Clostridium saccharobutylicum strain NCP 200, complete genome	9	4733067-4733162	7	CRISPRCasFinder	no		csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	Orphan	TAGATCCTTCTTCAGGTGCTATGAAAACAGGAT	33	0	0	NA	NA	NA	1	1	Orphan	csx1,cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG	NA,NA|203aa|down_5|NZ_CP016086.1_4740108_4740717_-,NA|86aa|down_9|NZ_CP016086.1_4746774_4747032_-	NA|302aa|up_9|NZ_CP016086.1_4720917_4721823_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|405aa|up_8|NZ_CP016086.1_4721923_4723138_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|479aa|up_7|NZ_CP016086.1_4723337_4724774_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|415aa|up_6|NZ_CP016086.1_4724924_4726169_-	pfam13425, O-antigen_lig, O-antigen ligase like membrane protein	NA|367aa|up_5|NZ_CP016086.1_4726408_4727509_-	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|294aa|up_4|NZ_CP016086.1_4727599_4728481_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|413aa|up_3|NZ_CP016086.1_4728473_4729712_-	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|246aa|up_2|NZ_CP016086.1_4729756_4730494_-	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|349aa|up_1|NZ_CP016086.1_4730524_4731571_-	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]	NA|214aa|up_0|NZ_CP016086.1_4731641_4732283_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|256aa|down_0|NZ_CP016086.1_4734399_4735167_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP016086.1_4735184_4735928_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|227aa|down_2|NZ_CP016086.1_4735940_4736621_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|325aa|down_3|NZ_CP016086.1_4737234_4738209_-	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|364aa|down_4|NZ_CP016086.1_4738813_4739905_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|203aa|down_5|NZ_CP016086.1_4740108_4740717_-	NA	NA|396aa|down_6|NZ_CP016086.1_4741326_4742514_-	pfam07907, YibE_F, YibE/F-like protein	NA|553aa|down_7|NZ_CP016086.1_4742659_4744318_-	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|572aa|down_8|NZ_CP016086.1_4744721_4746437_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|86aa|down_9|NZ_CP016086.1_4746774_4747032_-	NA
