The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	27282	70036	4106364	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	77634	136108	4106364	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	164893	303019	4106364	transposase,tRNA,protease	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225621_226317_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226333_227746_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227858_229289_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229330_231244_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231562_232129_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232219_233221_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280423_281272_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287020_287647_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287669_288596_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288604_290191_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290187_291192_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291391_292252_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292283_293285_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293355_294165_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294242_296102_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296230_297433_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297546_298428_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299930_300491_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300550_301501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301692_301980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302068_303019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	390855	448364	4106364	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417526_417796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	589367	650558	4106364	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589367_590318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590793_591684_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591680_592502_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592701_593193_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593211_594285_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594331_595435_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595510_596131_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596151_596661_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596715_596967_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597030_598164_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598171_598558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598554_601074_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601502_601841_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601837_602344_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602405_603206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603316_604258_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604351_605887_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607566_609417_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609420_610254_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610253_611195_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611446_612418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612559_614848_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615154_616063_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616117_617083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617157_618819_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618890_619601_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619567_619732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619749_620700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621398_621782_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621839_622442_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622459_622861_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622976_623888_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623884_624466_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625260_625995_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626035_627085_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627232_627811_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628197_629175_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629268_633663_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633863_634712_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634870_635683_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635738_636689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636787_637588_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637649_638033_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638044_639397_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639684_640014_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640016_640766_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640948_641869_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641915_642128_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642150_642573_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642589_643690_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643786_645304_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645379_646219_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646240_647113_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647203_648298_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648591_649542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649616_650558_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	655882	702073	4106364	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655882_656908_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656948_657188_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657257_658847_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658846_659395_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659475_660048_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660066_660978_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661051_662020_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662142_663216_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663220_665041_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665117_666068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666156_666492_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666625_667276_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667297_668716_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668785_669541_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669509_670268_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670278_671160_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671176_671884_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671886_672645_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672854_674597_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674589_675114_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675153_675948_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676115_677189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677287_678238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678489_678696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678767_679379_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679933_680185_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680177_680867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680884_681106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681123_682074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682713_683199_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683185_684463_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684465_685884_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685912_686968_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686973_687216_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687338_687941_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688369_689320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689994_690246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690308_690791_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690804_690993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690992_691388_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691384_691783_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691779_692202_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692209_692710_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692964_693483_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693492_693822_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693839_694130_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694155_696768_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696777_697137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697204_697738_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697734_698124_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698116_702073_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	708239	762169	4106364	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708239_709970_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710022_710451_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710453_711134_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711133_711592_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711628_712603_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712619_713936_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713967_714465_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714551_715241_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715240_716290_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716286_717081_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717249_717600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717575_718133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719262_720213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722350_723580_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723582_725025_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725129_726275_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726306_727104_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727128_728688_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728684_731057_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731166_732270_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732269_732962_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733105_733807_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733791_734169_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734900_735851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736010_736883_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737223_737442_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737481_738861_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738902_740300_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740339_741992_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741995_742880_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742879_743821_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743899_745519_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745685_746501_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746568_747138_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747138_748089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748743_749841_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749874_751140_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751297_752248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752491_753082_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753097_755542_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755661_756633_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756764_757289_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757248_758199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758420_760616_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760688_761096_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761218_762169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	853047	913923	4106364	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853047_853998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854015_854570_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854571_855006_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855002_855437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855420_856224_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856240_857056_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857052_857868_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858014_858716_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858743_860702_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860784_861735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861955_862624_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862747_863854_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863866_866980_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866976_868470_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868484_869156_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869199_869694_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869834_870482_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870585_872634_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872630_874643_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874668_876003_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876111_877104_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877170_879255_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879279_880251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880379_881411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881414_882566_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882736_883660_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883737_884562_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884758_885775_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885971_886955_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888553_889942_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889972_890962_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891072_892305_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892586_893387_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893409_895641_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896428_896875_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896896_897643_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897786_898764_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899397_900009_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900002_901220_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901360_902311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902409_903360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903356_904076_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904196_906356_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906446_906716_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906804_907011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907009_907537_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907555_908335_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908502_909519_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909591_910083_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910093_911809_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912972_913923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	934670	998263	4106364	transposase	Bacillus_virus(15.38%)	58	NA	NA
WP_005012067.1|934670_935621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935673_935895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936054_936267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936386_937505_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937601_937817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938010_938262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938374_939325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939321_939705_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939759_941574_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941723_942551_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942596_943577_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943573_943786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943782_944964_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945127_945862_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945863_948476_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948611_950525_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951140_951551_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951648_952734_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952832_953783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953779_954754_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954878_955790_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956066_956459_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956588_957539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957568_957751_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958523_959705_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959920_960598_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960594_961320_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961445_962027_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962397_965079_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965081_966212_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966204_967290_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967376_968276_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968272_969601_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969615_970287_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970474_972190_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972191_972551_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972742_973057_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973099_974320_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974316_975258_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975254_976244_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976278_976863_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976961_977912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977992_978904_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978964_980110_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980129_981044_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981115_981865_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981864_982794_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983037_984864_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984946_985588_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985777_986812_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988648_989713_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990510_991419_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992906_994181_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994334_994715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994722_995595_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995900_996281_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996491_997217_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997312_998263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1024375	1082460	4106364	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024375_1025326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025424_1026165_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026359_1028396_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028413_1029424_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029541_1030735_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030764_1031538_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031534_1032725_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032750_1033689_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033685_1036034_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036188_1036830_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038159_1038312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038343_1038892_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038910_1039396_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039573_1040512_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040514_1040832_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040877_1041822_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043502_1044153_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044206_1044542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044538_1045399_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045415_1045697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045770_1046034_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046277_1047228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047526_1048264_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048699_1049023_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049057_1049618_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049738_1050614_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050626_1051574_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051675_1051969_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051995_1054053_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054067_1054568_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054641_1056348_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057211_1058264_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058316_1058706_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058714_1059347_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059446_1060463_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061293_1062301_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062297_1063941_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063937_1064825_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064965_1065439_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065428_1066451_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066447_1067875_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068812_1069829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070161_1071097_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071146_1073027_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073093_1073438_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073582_1074719_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074715_1075789_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075946_1077383_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077473_1078115_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078450_1079467_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081509_1082460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1086506	1236200	4106364	transposase,holin,tRNA	Planktothrix_phage(12.5%)	113	NA	NA
WP_003819794.1|1086506_1086920_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086921_1087281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087323_1088868_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088951_1089782_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089816_1090971_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091013_1091886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092002_1094291_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095497_1095962_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095988_1096939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096956_1097094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097306_1098083_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098127_1098985_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099006_1100023_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100157_1101198_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101392_1103474_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103709_1105203_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105433_1106228_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106448_1107807_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107803_1108646_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108664_1110551_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110492_1110744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110788_1111421_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111439_1112042_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112193_1113144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113724_1114432_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114790_1115777_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115916_1116930_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116926_1117877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117894_1118035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117989_1118448_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118484_1119798_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119815_1120187_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120183_1121647_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121787_1122516_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122497_1125347_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125559_1126510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126677_1127502_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127501_1128380_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129284_1130400_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130428_1131223_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131219_1133085_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133163_1133796_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133792_1134095_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134137_1135658_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135664_1136420_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136449_1137554_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137656_1139357_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139338_1140316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140325_1141606_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141598_1142294_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142327_1143155_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143436_1146667_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147402_1151329_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153228_1155025_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155024_1155993_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156062_1156908_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156975_1157530_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157576_1158527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158625_1159258_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159422_1161705_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161859_1164556_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164681_1165170_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167580_1170451_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170496_1171711_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171940_1173368_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173465_1174557_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174569_1175328_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175415_1176318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176314_1177265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177394_1178378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178432_1179155_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180633_1181989_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182069_1184445_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184609_1186685_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186746_1187541_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187648_1188611_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188598_1189354_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189461_1191099_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191166_1191904_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192006_1192582_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192754_1193291_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193323_1193638_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193653_1194499_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194537_1195917_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195994_1196876_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196974_1197925_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197921_1198332_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198439_1199294_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199286_1200249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200294_1201419_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201524_1202403_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202527_1203307_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203460_1204882_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205316_1207014_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207240_1208182_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208508_1209255_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209262_1210189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210310_1211228_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211267_1212221_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212245_1212824_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214497_1215106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215183_1215537_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215620_1216610_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216606_1216795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216812_1217763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217849_1218800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218796_1219747_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220007_1221036_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221115_1222414_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222410_1222992_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223304_1227351_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227591_1235253_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235249_1236200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1270675	1327886	4106364	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270675_1271626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275372_1275984_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276206_1277667_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277763_1279356_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279709_1279967_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279968_1281309_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281404_1282094_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282106_1283537_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285261_1286083_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286093_1287665_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287693_1288671_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288697_1289501_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289497_1290292_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290299_1291535_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291548_1291962_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292711_1293662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294283_1296011_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296122_1297481_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297537_1297756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297773_1298724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298764_1299835_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299857_1300736_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300907_1301879_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302041_1302884_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303045_1303726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303719_1304889_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304885_1305917_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305984_1307202_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307236_1308769_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308849_1309473_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309503_1310115_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310150_1310621_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311052_1312057_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312093_1313608_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313611_1314571_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314599_1315403_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315404_1317039_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317122_1318184_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318382_1318652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318655_1319180_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319595_1320546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320542_1321577_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321685_1322324_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322618_1322846_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322968_1323682_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323926_1324877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325016_1325262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325376_1326825_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326935_1327886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1418119	1470271	4106364	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418119_1419070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419087_1419240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419236_1419590_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419602_1419965_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420006_1420432_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420634_1421891_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422089_1423070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423219_1424461_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424559_1425510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425518_1426214_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429034_1429634_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429644_1431810_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431833_1433618_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433617_1433707_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434401_1434674_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434673_1436740_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436736_1437687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437785_1438736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438851_1439184_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439180_1439867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439853_1440813_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440845_1443215_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443214_1443847_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443948_1445289_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445335_1446691_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446981_1447218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447405_1447723_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447995_1448511_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448781_1449537_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449875_1450082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450089_1450749_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451043_1453248_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453358_1454582_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454704_1455679_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455746_1456940_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456954_1457755_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457751_1459608_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459604_1460210_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460228_1461614_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462339_1463566_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463654_1464437_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464535_1465486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465512_1466286_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466297_1467539_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469320_1470271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1514196	1582281	4106364	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514196_1514685_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514802_1515381_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515486_1515855_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515953_1516904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516910_1518023_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518709_1519912_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520115_1522776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522788_1526193_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526860_1529086_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529132_1529459_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529509_1530118_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530216_1531167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531236_1532001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531997_1532534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532700_1533552_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533611_1534238_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534234_1535185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535283_1536396_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536385_1537387_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537492_1539004_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539000_1540305_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540416_1540977_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541244_1541799_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542254_1542470_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542724_1545322_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545318_1546506_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547163_1547778_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547866_1548988_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549005_1549911_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550803_1551754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551935_1552688_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552756_1553416_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553412_1554141_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554153_1556433_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556457_1556661_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556702_1557335_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557470_1558388_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558384_1559098_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559335_1560106_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560110_1560710_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560954_1562445_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562503_1562788_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563353_1564280_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564416_1565157_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565323_1566700_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566881_1567787_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569438_1571241_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571358_1572009_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572107_1573058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573079_1574300_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574485_1575898_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575961_1577029_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577028_1578516_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578525_1579470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579629_1580328_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580405_1581311_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581330_1582281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1618230	1673821	4106364	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618230_1619181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619239_1620013_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620005_1621562_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621558_1622509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623835_1624438_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624677_1625379_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625372_1626155_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626339_1627290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627388_1628126_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628315_1629074_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629120_1630110_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630287_1631256_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632795_1633764_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633772_1634714_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635187_1636198_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636188_1637703_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637699_1639046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639048_1640083_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640132_1641758_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642310_1643261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643365_1644313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644366_1646181_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646173_1646848_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646977_1650052_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650065_1650365_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650679_1651303_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651546_1652416_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652393_1653338_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653423_1654350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654462_1655242_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655232_1656429_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656459_1657410_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657631_1658321_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658385_1659141_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659192_1660185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660194_1661148_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661263_1662226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663627_1664056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664052_1665003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665296_1666019_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666457_1667645_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667648_1667999_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669748_1670720_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670733_1671447_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671451_1672369_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672475_1672772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672870_1673821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1831588	1890858	4106364	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831588_1832539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832663_1833473_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833673_1834624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835897_1837115_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838171_1839074_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839150_1840023_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840153_1840522_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840579_1841626_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841821_1843078_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843082_1844420_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844569_1845526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845628_1846561_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846676_1846997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846989_1847349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847396_1848971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849023_1849968_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849985_1850816_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850808_1852443_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852439_1853795_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854701_1856279_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856282_1857557_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857654_1858029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859744_1860878_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860915_1861521_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861517_1862336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862407_1865032_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865018_1865273_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865339_1865921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866224_1866485_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866650_1867274_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867273_1868047_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868043_1869252_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869277_1869751_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869824_1870775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870873_1871824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871922_1873272_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874037_1874793_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874885_1877768_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878090_1878516_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878543_1879692_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879688_1880195_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880210_1881497_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881546_1882842_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882843_1883482_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883487_1884645_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884671_1886027_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886030_1887101_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887239_1887476_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887563_1888670_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888635_1889940_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889958_1890858_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1901098	1945421	4106364	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901098_1902049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902147_1903098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903297_1904383_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904398_1905160_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905156_1906080_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906178_1906703_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906711_1907455_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907550_1907790_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907803_1907956_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908041_1909532_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909623_1910562_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910558_1910735_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910737_1911400_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913021_1913165_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913161_1914136_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914030_1914285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914302_1915253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915249_1916524_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916627_1917821_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917817_1918471_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918467_1919904_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919891_1920251_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921065_1921206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921223_1922174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923219_1925085_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925342_1926863_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926950_1927601_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928549_1929845_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929866_1930751_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930849_1931725_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931714_1932071_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932201_1933176_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933305_1933485_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933582_1934107_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934117_1934954_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935066_1935438_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935434_1935986_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936001_1937693_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937741_1938422_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938669_1939134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939303_1940233_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940245_1940893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940966_1942784_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942867_1943818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944470_1945421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	1975194	2039563	4106364	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975194_1976145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976366_1977317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977415_1978381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978518_1979418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982012_1983500_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983510_1984707_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984779_1986099_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986095_1986971_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987001_1988150_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988167_1988482_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988503_1989226_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989225_1990044_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990048_1990576_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990581_1991838_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992196_1993336_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993413_1994286_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995156_1996107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996066_1996702_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997061_1998384_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998702_1999524_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000948_2001521_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001560_2003390_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003352_2004411_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004448_2004910_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004994_2005741_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007231_2010462_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010528_2011860_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012112_2012487_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012589_2013768_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013778_2014369_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014479_2015286_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015311_2016106_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017106_2018081_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018239_2018752_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018908_2019880_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021624_2022431_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022427_2023729_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023679_2024444_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024557_2025328_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025412_2026600_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026672_2027047_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027147_2028410_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028406_2029264_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029436_2030438_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030889_2031840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033403_2034555_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034923_2035160_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035223_2035391_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035504_2037400_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037563_2038514_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038612_2039563_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	2171089	2228368	4106364	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171089_2172040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172138_2174133_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174192_2175158_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175147_2178009_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178011_2178518_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178622_2179831_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179832_2180771_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180932_2181406_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181402_2182353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182463_2182904_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183032_2184262_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184300_2185122_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185175_2186327_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186418_2186907_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189457_2192007_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192077_2194651_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194916_2195117_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195148_2195310_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195367_2195706_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195854_2196805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197579_2198248_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198229_2200185_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200427_2201177_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201189_2202053_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202056_2203472_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203605_2204334_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204472_2204673_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204848_2205247_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205270_2206671_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206789_2207542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207830_2208508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208534_2209314_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209310_2210195_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210212_2210992_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210976_2211735_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211872_2212508_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212775_2213792_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213889_2214930_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215064_2216357_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217716_2218100_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218117_2218705_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218742_2219693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219791_2220352_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220348_2220894_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221089_2222118_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222158_2223499_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223607_2224612_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224718_2227319_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2227417_2228368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	2575469	2641969	4106364	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575469_2576420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576789_2577362_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577364_2578375_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578367_2578868_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578878_2579220_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579288_2580023_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580039_2580309_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580331_2581120_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581166_2582183_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582399_2583842_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584020_2585640_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585760_2587581_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587659_2589192_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589225_2590872_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590941_2591964_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591981_2593115_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593117_2593807_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593806_2594592_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594635_2595400_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595438_2596860_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596925_2597630_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597677_2598097_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598109_2598517_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598700_2599411_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599537_2599828_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599845_2600328_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604833_2605988_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606293_2607310_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607556_2608345_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608411_2609092_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609088_2609859_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609957_2610908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610963_2611881_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611891_2613070_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613089_2614085_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615673_2616282_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616269_2617310_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617327_2618290_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618286_2619480_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619476_2620274_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620299_2621286_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621304_2623344_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623545_2624226_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624239_2625151_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625147_2625726_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625864_2626770_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626777_2630197_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630184_2632785_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633740_2634373_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634766_2635525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635521_2636724_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636911_2637862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638769_2639915_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639901_2640657_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640773_2640953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641018_2641969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	2670084	2707496	4106364	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670084_2671035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671133_2672084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672176_2672716_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672822_2673167_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673224_2674673_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674860_2675196_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676823_2678002_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678084_2678585_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678694_2679396_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679407_2679872_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679886_2680162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680158_2680935_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680963_2681791_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681916_2682387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682513_2683407_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683454_2684636_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684648_2685464_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685597_2686125_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686121_2686619_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686766_2687144_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687365_2688316_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688414_2689026_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689260_2690388_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690498_2691587_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691639_2692491_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692510_2693392_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693568_2694882_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695092_2695926_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695922_2696504_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696857_2697808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697823_2698939_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699041_2699968_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699967_2701206_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701202_2701970_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701970_2702672_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702753_2703200_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704089_2704728_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705496_2706447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706545_2707496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	2806623	2861140	4106364	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_076879566.1|2806623_2807574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807902_2808508_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808561_2809875_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809949_2810420_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810419_2811208_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811218_2812871_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812958_2813909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815070_2815577_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815573_2816338_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816353_2816638_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816702_2817692_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817863_2818793_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818764_2819451_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819484_2820030_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820074_2821340_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821336_2822239_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823420_2824365_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824459_2825977_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826018_2827647_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827754_2828636_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831748_2832123_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832147_2832486_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832529_2834164_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834202_2835549_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835656_2837078_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837147_2837732_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837834_2838785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838919_2840026_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840036_2841134_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841278_2842484_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842490_2843012_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843008_2843491_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843496_2843748_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843728_2844214_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844349_2847811_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847828_2848713_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848722_2849154_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849400_2849904_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849981_2851382_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851456_2852332_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852328_2853336_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853803_2854109_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854199_2854790_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854980_2855997_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856188_2858525_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858607_2859042_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859140_2860091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860189_2861140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	2869165	2925948	4106364	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869165_2870116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871822_2872089_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872796_2873135_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_077069211.1|2874463_2877448_-	autotransporter BapC	NA	NA	NA	NA	NA
WP_010931107.1|2877686_2878289_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878385_2879675_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879732_2880464_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880460_2881264_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881260_2882349_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882345_2883275_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883423_2884569_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_154698391.1|2885557_2885716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885870_2889692_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889848_2890517_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890521_2892195_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892213_2893533_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893537_2895853_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895908_2898077_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898073_2903254_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903352_2903667_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903894_2904140_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904234_2904753_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904852_2906058_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906173_2907571_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907687_2908266_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908338_2909730_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909897_2910848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911128_2911749_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911745_2912159_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912155_2913199_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913254_2913443_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913452_2914217_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914307_2914964_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915055_2915814_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915839_2917441_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917641_2918646_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918746_2919010_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919127_2919904_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920494_2921445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923828_2924941_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2924997_2925948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	2956334	3000025	4106364	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956334_2957285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957302_2957452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957405_2958302_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960579_2962805_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962969_2964058_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964014_2964668_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964715_2965513_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966044_2966995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967075_2968224_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968280_2969231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969329_2969635_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969663_2970098_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970099_2971344_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971340_2972051_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972065_2972977_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973339_2973744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973740_2974199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974205_2975114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975110_2975977_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975963_2976791_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976801_2977929_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979006_2980245_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980286_2981549_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981555_2982308_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982359_2982545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982820_2983285_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983316_2983976_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984120_2986229_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986225_2987176_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987279_2987900_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988003_2988744_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989878_2991003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991048_2991417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991658_2992609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993644_2994187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994384_2994555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994572_2995523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995519_2996428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996554_2997391_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997903_2999013_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999074_3000025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	3122608	3186442	4106364	transposase,tRNA,protease	Pseudomonas_phage(30.0%)	56	NA	NA
WP_005015810.1|3122608_3123559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3123704_3124829_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3125034_3125598_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3126592_3127075_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3127232_3128480_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3128699_3129356_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3129391_3130621_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_158516320.1|3130715_3130871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3130888_3131839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3131930_3133346_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3133351_3134488_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3134557_3134929_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3135016_3135763_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3135799_3136864_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3137052_3137445_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3137454_3137883_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3138178_3139276_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3139617_3140982_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3141040_3141592_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3141605_3142280_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3143536_3144346_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3144348_3145185_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3145199_3145892_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3145903_3146293_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3146398_3147787_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3147903_3149400_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3149696_3150371_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3150469_3151420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3151518_3152469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3152465_3154925_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_033446281.1|3155060_3156467_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3156470_3157658_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3157726_3158236_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3158437_3158890_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3159451_3162514_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3162819_3165747_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3165768_3166965_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3167282_3167810_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_023853329.1|3167963_3168524_+	YggT family protein	NA	NA	NA	NA	NA
WP_023853325.1|3168531_3169986_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3170005_3171133_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_019248818.1|3171262_3172438_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3172415_3172655_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3172935_3173439_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3173611_3174553_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3174564_3175662_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3176627_3177974_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3177983_3178433_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3178522_3178957_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3179035_3179584_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3179666_3181037_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3181047_3181641_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3181712_3183596_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3183633_3184533_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3184529_3185393_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3185491_3186442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	3234586	3248774	4106364	transposase,protease	Erwinia_phage(100.0%)	15	NA	NA
WP_005012808.1|3234586_3235537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3235981_3236293_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236292_3236823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3236779_3236968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3236985_3237936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238225_3238690_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3238704_3240210_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3240463_3242071_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242126_3243032_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3243472_3244423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3244521_3245472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245553_3246135_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246559_3246865_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246878_3248213_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3248234_3248774_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 27
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	3267197	3329262	4106364	transposase,holin,tRNA,integrase	Tupanvirus(12.5%)	48	3260591:3260609	3333349:3333367
3260591:3260609	attL	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
WP_010931277.1|3267197_3267533_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267532_3268375_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3268473_3269424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269488_3270460_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270523_3271543_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271544_3272918_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3273195_3273876_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3273951_3276015_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3276011_3277106_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3277120_3278380_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3278399_3280088_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3280362_3281115_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3281253_3282204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282516_3283995_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3284001_3285111_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3285122_3285803_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285824_3286580_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286715_3287600_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287687_3288269_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288529_3288829_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3288980_3289460_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3290179_3291616_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291612_3292116_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3292131_3293082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3293609_3294383_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3294515_3295526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3295677_3297333_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3297387_3297729_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3297742_3299182_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3299314_3300130_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3300093_3300306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3300323_3301274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302661_3303609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303835_3304576_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3304661_3305612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3305629_3305785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3307053_3308625_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308957_3310811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3310855_3313420_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313838_3314789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3317654_3318149_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3318165_3319116_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3319102_3319303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3319299_3320511_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3320526_3323478_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_019247951.1|3323479_3326236_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3326746_3327793_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3328134_3329262_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
3333349:3333367	attR	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
>prophage 28
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	3381019	3434760	4106364	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381019_3381970_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382374_3383019_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383043_3383628_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383728_3384346_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384348_3386064_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386060_3386369_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386385_3387003_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387047_3387350_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387450_3388305_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388492_3388717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388886_3389159_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389576_3389984_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390353_3391148_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391248_3392484_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392552_3393569_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393580_3394957_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394953_3396150_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396146_3397685_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397681_3398941_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400881_3401832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402598_3403693_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403685_3405020_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404973_3405657_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405682_3406846_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406842_3407844_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407843_3408716_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408712_3409462_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409458_3410250_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410246_3411386_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411661_3412447_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412480_3413263_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413266_3413656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414795_3415659_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415694_3416783_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416779_3417730_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418083_3421062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421988_3422867_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424815_3425766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425762_3426230_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426272_3427043_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427063_3427864_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427874_3429284_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429378_3430164_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430403_3431420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431527_3431920_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432057_3432738_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432742_3433714_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433809_3434760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	3440914	3500212	4106364	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440914_3442678_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442789_3443668_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443780_3444596_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444599_3444851_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444935_3445952_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446282_3446504_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448864_3449782_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450279_3451488_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451567_3453139_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453256_3454192_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454380_3455325_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455892_3461610_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461615_3462743_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462798_3463425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463696_3464713_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464808_3465519_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465515_3466505_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466600_3468232_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468234_3468972_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469127_3470000_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470349_3471489_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471485_3472145_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472216_3472849_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472878_3473397_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473407_3474517_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474563_3475418_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475419_3476322_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477544_3478495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480249_3481239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481414_3482203_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482199_3483231_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483249_3483813_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483868_3485389_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485652_3486357_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486364_3487093_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487207_3487582_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487624_3488914_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488910_3490080_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490076_3490916_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490975_3491911_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3491923_3492874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492972_3493935_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493966_3494326_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494450_3495353_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495354_3497127_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497161_3497938_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499261_3500212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	3515150	3573223	4106364	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515150_3516101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516229_3517363_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517406_3518312_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518314_3520015_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520011_3520932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520939_3521917_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521975_3523010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3524984_3525221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525347_3526211_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526299_3527121_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527200_3527938_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527934_3528927_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529079_3529703_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529747_3530896_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533219_3534170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534510_3535461_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535559_3536510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536806_3537304_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537346_3539122_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539129_3539996_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540002_3540737_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541906_3542701_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542990_3543581_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543614_3544943_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545017_3546163_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546274_3547273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547235_3547670_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549186_3550071_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550067_3551273_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551269_3552130_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552242_3554033_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554073_3554718_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554739_3555048_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555213_3556500_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557933_3558884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560835_3562050_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562155_3563145_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563141_3563750_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563762_3564392_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564388_3565009_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565040_3565832_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566683_3567139_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567157_3568084_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568137_3569424_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570354_3571227_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571223_3572174_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572272_3573223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013889	Bordetella pertussis strain J105 chromosome, complete genome	4106364	4005432	4070344	4106364	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005432_4005918_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006006_4006144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006136_4007117_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007383_4008193_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008232_4008913_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008906_4009365_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009376_4009739_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009821_4010505_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010560_4010869_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010887_4011202_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011198_4013673_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013680_4015072_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015068_4015254_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015232_4015934_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015930_4016752_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016732_4017857_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017849_4018869_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019074_4019965_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020209_4021001_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021083_4021458_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021435_4022845_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022837_4024220_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024554_4026159_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026236_4027208_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027218_4028145_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028535_4029486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029655_4030882_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031081_4031948_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031940_4032903_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033003_4033954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034052_4035003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035101_4036052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036048_4037542_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037538_4040646_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040642_4043711_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043707_4044958_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045138_4045891_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045932_4046577_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046585_4047566_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047665_4048409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048491_4048839_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048936_4049779_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049823_4050711_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050737_4050926_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051023_4052481_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052467_4053994_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054012_4054480_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054479_4055502_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055622_4056363_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056417_4057518_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057519_4058710_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058829_4059846_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060164_4060836_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060832_4061741_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061952_4062600_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066460_4067528_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067538_4068348_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068437_4069211_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069211_4069376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069393_4070344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
