The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012546	Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260 chromosome, complete genome	1782665	413404	510417	1782665	transposase,plate,capsid,tail,integrase,portal,tRNA	Escherichia_phage(10.71%)	98	415341:415360	496285:496304
WP_078387464.1|413404_414781_+|tRNA	glutamate--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	28.8	7.9e-14
WP_078387465.1|414794_416051_+	malate dehydrogenase	NA	NA	NA	NA	NA
415341:415360	attL	AAAGATATAAAGATAGTTGT	NA	NA	NA	NA
WP_069636598.1|416055_416682_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_069633074.1|416846_417890_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_078388194.1|421497_422325_+	DNA ligase	NA	A0A1X9VNU1	Mimivirus	33.6	1.7e-35
WP_078440444.1|422343_423270_-	phospholipase A	NA	NA	NA	NA	NA
WP_078440445.1|423262_423883_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
WP_078440504.1|428014_428821_-	helix-turn-helix domain-containing protein	NA	M5A9D2	Nitratiruptor_phage	49.2	8.1e-27
WP_069637869.1|429062_429515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153300945.1|429587_429755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078387956.1|429754_432022_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_069637871.1|432095_432959_+	AAA family ATPase	NA	A0A2D1GNS0	Pseudomonas_phage	31.2	7.6e-31
WP_069637872.1|432962_433178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637873.1|433147_433387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637874.1|433496_433811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637875.1|433822_434596_+	DUF2303 family protein	NA	NA	NA	NA	NA
WP_069637876.1|434657_435023_+	DUF1937 family protein	NA	NA	NA	NA	NA
WP_069637877.1|435218_435638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637878.1|435719_436358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637879.1|436354_436795_+	DUF1018 domain-containing protein	NA	NA	NA	NA	NA
WP_069637880.1|436820_437021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099046651.1|437010_438216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637882.1|438212_438596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078387954.1|438665_439106_+	hypothetical protein	NA	G8I4M9	Mycobacterium_phage	34.5	3.2e-09
WP_069637883.1|439117_440689_-	hypothetical protein	NA	S5MBV8	Brevibacillus_phage	28.9	1.8e-38
WP_069637884.1|440782_441841_-|portal	phage portal protein	portal	Q9HH53	Methanothermobacter_phage	28.6	2.2e-11
WP_069637885.1|441966_442704_+	hypothetical protein	NA	A0A1B1P7E4	Bacillus_phage	40.4	4.4e-19
WP_086936834.1|442700_443633_+|capsid	P2 family phage major capsid protein	capsid	NA	NA	NA	NA
WP_069637887.1|443616_443919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637888.1|443920_444298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637889.1|444294_444714_+	hypothetical protein	NA	A0A1S5RFB5	Helicobacter_phage	35.0	1.5e-11
WP_069637890.1|444713_445067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637891.1|445059_445299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637892.1|445295_445481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637893.1|445482_445755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637958.1|445779_446301_+|plate	phage baseplate assembly protein V	plate	V5YUM9	Pseudomonas_phage	35.3	1.3e-12
WP_069637894.1|446297_446582_+	GPW/gp25 family protein	NA	Q75QM0	Wolbachia_phage	45.2	2.9e-11
WP_069637895.1|446722_447808_+|plate	baseplate J/gp47 family protein	plate	A4JWL6	Burkholderia_virus	27.3	1.0e-16
WP_069637896.1|447804_448425_+|tail	phage tail protein	tail	A0A2K9V471	Faecalibacterium_phage	35.8	3.3e-12
WP_069637897.1|448421_449576_+|tail	phage tail protein	tail	F1BUP1	Erwinia_phage	42.9	6.0e-23
WP_069637898.1|449588_450341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069637899.1|450352_451555_+	radical SAM protein	NA	A0A1B2IA90	Erwinia_phage	31.6	5.1e-49
WP_069637900.1|451554_452409_+	radical SAM protein	NA	NA	NA	NA	NA
WP_078440505.1|452800_453961_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A7YGY2	Campylobacter_phage	45.4	1.2e-82
WP_078440506.1|454128_454644_+|tail	phage major tail tube protein	tail	A7YGZ4	Campylobacter_phage	44.0	5.9e-31
WP_069637904.1|454645_454888_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_153300943.1|455179_455470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440508.1|455499_457920_+|tail	phage tail tape measure protein	tail	A0A097I4X9	Vibrio_phage	39.4	5.2e-77
WP_078440509.1|457910_458282_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_078440510.1|458278_458470_+|tail	tail protein X	tail	NA	NA	NA	NA
WP_078440511.1|458463_459438_+|tail	phage tail protein	tail	D5LGY1	Escherichia_phage	28.7	1.7e-18
WP_078387942.1|459532_460288_+	DNA adenine methylase	NA	A7YGI9	Campylobacter_phage	62.2	4.7e-85
WP_078387941.1|460367_461027_+	S24 family peptidase	NA	A0A1B0RXB1	Streptococcus_phage	28.4	4.8e-09
WP_153300920.1|462800_462950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078415696.1|463381_464308_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	36.5	9.0e-46
WP_078415724.1|464385_465291_+	radical SAM protein	NA	NA	NA	NA	NA
WP_078440512.1|465287_466118_+	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_069632876.1|467014_467491_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_069636472.1|467724_467985_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_078440513.1|468103_469819_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_069632879.1|469815_470202_-	urease subunit beta	NA	NA	NA	NA	NA
WP_069632880.1|470211_470514_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_069637914.1|470532_471318_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_069636474.1|471323_471935_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_078440514.1|471944_472649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069636476.1|472660_473158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157887323.1|473344_476806_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_078415705.1|476919_477324_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_078440931.1|477456_478590_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_078415726.1|478647_479004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440516.1|479003_479633_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_078440517.1|479726_480221_+	flavodoxin	NA	NA	NA	NA	NA
WP_078388190.1|480273_481101_-	biotin synthase	NA	NA	NA	NA	NA
WP_157887324.1|481981_483484_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_078440518.1|483708_484308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440519.1|484332_486789_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	26.8	1.4e-61
WP_069632891.1|487024_488374_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_069632892.1|488388_488736_+	iron hydrogenase small subunit	NA	NA	NA	NA	NA
WP_078440520.1|488728_489412_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_078387481.1|489426_490899_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydG	NA	NA	NA	NA	NA
WP_078423047.1|490886_491936_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydE	NA	NA	NA	NA	NA
WP_078440521.1|491932_493117_+	[FeFe] hydrogenase H-cluster maturation GTPase HydF	NA	NA	NA	NA	NA
WP_078387482.1|493135_495223_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.3	5.4e-99
WP_078387483.1|495414_496506_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
496285:496304	attR	AAAGATATAAAGATAGTTGT	NA	NA	NA	NA
WP_069636481.1|496550_498218_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_069636482.1|498565_499552_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_099046664.1|499554_500322_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	4.0e-15
WP_069637929.1|500325_501123_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_069632901.1|501159_502380_+	radical SAM protein	NA	NA	NA	NA	NA
WP_078387485.1|502376_502889_+	flavodoxin	NA	NA	NA	NA	NA
WP_069636485.1|503020_503809_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_069632904.1|503808_504873_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_069636487.1|504872_505517_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	5.7e-23
WP_069632906.1|505507_506269_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_078440522.1|506330_507983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440523.1|507983_508595_+	guanylate kinase	NA	G0XXC0	Cowpox_virus	35.0	1.5e-20
WP_069632909.1|508620_508821_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
WP_069637934.1|508830_510417_+|tRNA	arginine--tRNA ligase	tRNA	M1PAX3	Moumouvirus	22.2	2.6e-16
>prophage 2
NZ_CP012546	Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260 chromosome, complete genome	1782665	920932	966610	1782665	plate,capsid,tail,terminase,protease,portal,tRNA	Campylobacter_phage(22.73%)	71	NA	NA
WP_078440638.1|920932_921811_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_078440639.1|921827_922835_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_078440938.1|922923_923727_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_069632063.1|923744_924014_+	NifU family protein	NA	NA	NA	NA	NA
WP_069636708.1|924006_924552_+	histidine kinase	NA	NA	NA	NA	NA
WP_078440640.1|924535_925819_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_069632060.1|925820_926171_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_069632059.1|926170_926779_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	34.1	5.2e-26
WP_069632058.1|926742_927453_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_069632057.1|927457_927673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069632056.1|927983_928739_-	DNA adenine methylase	NA	A7YGI9	Campylobacter_phage	61.0	4.4e-83
WP_069632055.1|929592_930660_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_069632054.1|930667_930937_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_078440641.1|932554_932737_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_078387682.1|932741_932951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387683.1|933063_933318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110109156.1|933322_933481_-	DNA cytosine methyltransferase	NA	A0A173H0P2	Pseudoalteromonas_phage	74.3	6.2e-08
WP_078440642.1|933484_934201_-	DNA (cytosine-5-)-methyltransferase	NA	W8CQ31	Croceibacter_phage	56.7	5.5e-51
WP_078415509.1|934197_934413_-	DUF3310 domain-containing protein	NA	A0A1B1IWF3	uncultured_Mediterranean_phage	59.3	2.7e-14
WP_078387686.1|934415_935807_-	DEAD/DEAH box helicase	NA	F4YCV3	Synechococcus_phage	45.9	3.4e-105
WP_078387687.1|935817_936744_-	DNA methylase	NA	F4YCV3	Synechococcus_phage	58.3	1.6e-98
WP_078440643.1|936748_937087_-	single-stranded DNA-binding protein	NA	I6NRL7	Burkholderia_virus	44.3	3.9e-15
WP_078387689.1|937089_937587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153300935.1|937583_937730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440644.1|937741_938638_-	hypothetical protein	NA	X2KQ45	Campylobacter_phage	45.5	3.4e-34
WP_078387691.1|938634_938844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387692.1|938830_939142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387694.1|939477_939759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387695.1|940124_940370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387696.1|940353_940617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387697.1|940626_940812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387698.1|940926_941268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099046655.1|941273_941576_+	hypothetical protein	NA	X2KX12	Campylobacter_phage	49.4	2.3e-14
WP_078440645.1|941613_942816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078387701.1|942805_942991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440646.1|942980_943520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440647.1|943526_943751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440648.1|943741_945445_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_078387705.1|945532_945742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440649.1|945849_946149_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	47.9	1.0e-19
WP_078387707.1|946141_946426_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	38.7	1.4e-13
WP_078440650.1|946428_947355_-	hypothetical protein	NA	A0A1S6L010	Salmonella_phage	30.3	1.7e-12
WP_078387709.1|947353_947620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078387710.1|947772_948855_-|tail	phage tail tape measure protein	tail	Q75QK7	Wolbachia_phage	41.2	6.4e-51
WP_078387711.1|948931_949114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078415519.1|949218_949482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440651.1|949552_950047_-|tail	phage major tail tube protein	tail	NA	NA	NA	NA
WP_078440652.1|950051_950300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440653.1|950302_950539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078387716.1|952075_952393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078388205.1|952385_952601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440654.1|952645_952981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440655.1|952977_953346_-	DUF1353 domain-containing protein	NA	X2KQ25	Campylobacter_phage	47.5	1.2e-22
WP_078387719.1|953348_953960_-	hypothetical protein	NA	F5B3N7	Synechococcus_phage	50.0	2.1e-06
WP_078387720.1|953975_954602_-|tail	tail fiber protein	tail	A0A2K9VNA0	Shigella_phage	42.2	1.1e-23
WP_078440656.1|954823_955498_-|tail	phage tail protein	tail	F1BUP1	Erwinia_phage	42.5	1.7e-22
WP_078387722.1|955494_955971_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_078387723.1|956085_957141_-|plate	baseplate J/gp47 family protein	plate	NA	NA	NA	NA
WP_157887335.1|957137_957428_-	GPW/gp25 family protein	NA	NA	NA	NA	NA
WP_078440657.1|957497_957995_-|plate	phage baseplate assembly protein V	plate	A0A0E3Y4V1	Fusobacterium_phage	30.5	3.4e-07
WP_078387726.1|957996_958443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440658.1|958445_958742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440659.1|958747_959005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440660.1|959026_960778_-|capsid	phage major capsid protein	capsid	X2KXE1	Campylobacter_phage	31.6	1.7e-13
WP_078440661.1|960770_962186_-|portal	phage portal protein	portal	A0A0K1LM50	Rhodobacter_phage	22.9	1.2e-17
WP_078440662.1|962185_962413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440663.1|962480_962921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078440664.1|963159_964884_-|terminase	phage terminase large subunit family protein	terminase	A0A067ZJA1	Vibrio_phage	34.1	5.2e-87
WP_078440665.1|965488_965860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440666.1|965852_966410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078440667.1|966406_966610_+|tail	tail protein X	tail	NA	NA	NA	NA
>prophage 3
NZ_CP012546	Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260 chromosome, complete genome	1782665	1662382	1671521	1782665		Bacillus_phage(33.33%)	8	NA	NA
WP_069632756.1|1662382_1663465_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	28.7	2.0e-12
WP_078398151.1|1663461_1664523_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.6	6.5e-16
WP_069632755.1|1664605_1665223_+	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	35.7	9.9e-25
WP_153300807.1|1665762_1666071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078388092.1|1666067_1666922_+	deoxyribonuclease IV	NA	M1PMK4	Moumouvirus	33.5	2.8e-33
WP_078406256.1|1666914_1668177_+	outer membrane protein transport protein	NA	NA	NA	NA	NA
WP_078406257.1|1668186_1669803_+	long-chain-fatty-acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	27.7	6.6e-36
WP_078406258.1|1669802_1671521_+	ATP-binding protein	NA	A0A0R6PCP6	Moraxella_phage	31.1	7.1e-20
