assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002025065.1_ASM202506v1	NZ_CP019988	Enterococcus faecium isolate 2014-VREF-63 chromosome, complete genome	1	2270759-2270868	1	CRISPRCasFinder	no		DEDDh,cas14j,RT,cas3,DinG,cas2,csa3	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,RT,cas3,DinG,cas2,csa3	NA,NA	NA|720aa|up_9|NZ_CP019988.1_2259346_2261506_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP019988.1_2261555_2262521_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP019988.1_2262609_2263749_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP019988.1_2264057_2264771_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP019988.1_2265024_2265726_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP019988.1_2265959_2267492_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP019988.1_2267682_2268885_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP019988.1_2268966_2269656_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP019988.1_2269761_2270130_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP019988.1_2270182_2270686_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP019988.1_2271095_2271785_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP019988.1_2271888_2272311_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP019988.1_2272653_2273322_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP019988.1_2273334_2274207_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP019988.1_2274297_2275317_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|302aa|down_5|NZ_CP019988.1_2275489_2276395_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP019988.1_2276453_2276999_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP019988.1_2277099_2277270_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP019988.1_2277293_2277446_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP019988.1_2277607_2278252_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_002025065.1_ASM202506v1	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	1	165251-165361	1	CRISPRCasFinder	no		cas14j,csa3,DEDDh	Orphan	ACAACTCATCAGTCCTTATTGACAAAGAGCC	31	1	10	165282-165330|165282-165330|165282-165330|165282-165330|165282-165330|165282-165330|165282-165330|165282-165330|165282-165330|165282-165330	NZ_CP019988.1_276592-276544|NZ_CP019988.1_1151515-1151467|NZ_CP019988.1_1278155-1278203|NZ_CP019988.1_1486555-1486603|NZ_CP019988.1_1596933-1596981|NZ_CP019988.1_1655720-1655672|NZ_CP019988.1_1678534-1678582|NZ_CP019988.1_1703306-1703354|NZ_CP019988.1_2033882-2033930|NZ_CP019989.1_137862-137910	NA	1	1	Orphan	DEDDh,cas14j,RT,cas3,DinG,cas2,csa3	NA,NA	NA|554aa|up_9|NZ_CP019989.1_148888_150550_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|994aa|up_8|NZ_CP019989.1_150546_153528_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|638aa|up_7|NZ_CP019989.1_153655_155569_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|204aa|up_6|NZ_CP019989.1_155598_156210_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|491aa|up_5|NZ_CP019989.1_156260_157733_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|304aa|up_4|NZ_CP019989.1_157756_158668_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|313aa|up_3|NZ_CP019989.1_158679_159618_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|525aa|up_2|NZ_CP019989.1_159846_161421_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|243aa|up_1|NZ_CP019989.1_161398_162127_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|425aa|up_0|NZ_CP019989.1_162509_163784_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|110aa|down_0|NZ_CP019989.1_165377_165707_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_1|NZ_CP019989.1_165696_165969_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|268aa|down_2|NZ_CP019989.1_166419_167223_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|375aa|down_3|NZ_CP019989.1_167200_168325_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|272aa|down_4|NZ_CP019989.1_168340_169156_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|down_5|NZ_CP019989.1_169145_170036_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_6|NZ_CP019989.1_170102_171392_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|493aa|down_7|NZ_CP019989.1_172740_174219_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|400aa|down_8|NZ_CP019989.1_174208_175408_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|459aa|down_9|NZ_CP019989.1_175537_176914_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
GCF_002025065.1_ASM202506v1	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	2	249052-249180	2	CRISPRCasFinder	no	cas14j	cas14j,csa3,DEDDh	Unclear	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	TypeV	DEDDh,cas14j,RT,cas3,DinG,cas2,csa3	NA|50aa|up_6|NZ_CP019989.1_238281_238431_-,NA|791aa|up_3|NZ_CP019989.1_242182_244555_-,NA|111aa|up_0|NZ_CP019989.1_247411_247744_-,NA|65aa|down_0|NZ_CP019989.1_250959_251154_+,NA|312aa|down_5|NZ_CP019989.1_254919_255855_+	NA|162aa|up_9|NZ_CP019989.1_236212_236698_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|300aa|up_8|NZ_CP019989.1_236700_237600_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|198aa|up_7|NZ_CP019989.1_237612_238206_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|50aa|up_6|NZ_CP019989.1_238281_238431_-	NA	NA|735aa|up_5|NZ_CP019989.1_238446_240651_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|487aa|up_4|NZ_CP019989.1_240661_242122_-	pfam13155, Toprim_2, Toprim-like	NA|791aa|up_3|NZ_CP019989.1_242182_244555_-	NA	NA|417aa|up_2|NZ_CP019989.1_244964_246215_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|114aa|up_1|NZ_CP019989.1_246451_246793_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|111aa|up_0|NZ_CP019989.1_247411_247744_-	NA	NA|65aa|down_0|NZ_CP019989.1_250959_251154_+	NA	cas14j|383aa|down_1|NZ_CP019989.1_251860_253009_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|135aa|down_2|NZ_CP019989.1_253025_253430_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|85aa|down_3|NZ_CP019989.1_253788_254043_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|106aa|down_4|NZ_CP019989.1_254043_254361_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|312aa|down_5|NZ_CP019989.1_254919_255855_+	NA	NA|285aa|down_6|NZ_CP019989.1_256938_257793_+	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|750aa|down_7|NZ_CP019989.1_257889_260139_+	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|392aa|down_8|NZ_CP019989.1_260141_261317_+	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily	NA|88aa|down_9|NZ_CP019989.1_262461_262725_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system
GCF_002025065.1_ASM202506v1	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	3	283801-283911	3	CRISPRCasFinder	no		cas14j,csa3,DEDDh	Orphan	GGCTCTTTGTCAATAAGGACTGATGGGTTGT	31	1	10	283832-283880|283832-283880|283832-283880|283832-283880|283832-283880|283832-283880|283832-283880|283832-283880|283832-283880|283832-283880	NZ_CP019988.1_276544-276592|NZ_CP019988.1_1151467-1151515|NZ_CP019988.1_1278203-1278155|NZ_CP019988.1_1486603-1486555|NZ_CP019988.1_1596981-1596933|NZ_CP019988.1_1655672-1655720|NZ_CP019988.1_1678582-1678534|NZ_CP019988.1_1703354-1703306|NZ_CP019988.1_2033930-2033882|NZ_CP019989.1_137910-137862	NA	1	1	Orphan	DEDDh,cas14j,RT,cas3,DinG,cas2,csa3	NA|181aa|up_8|NZ_CP019989.1_267713_268256_+,NA	NA|227aa|up_9|NZ_CP019989.1_266039_266720_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|181aa|up_8|NZ_CP019989.1_267713_268256_+	NA	NA|150aa|up_7|NZ_CP019989.1_268411_268861_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|388aa|up_6|NZ_CP019989.1_268890_270053_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|426aa|up_5|NZ_CP019989.1_270302_271580_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|219aa|up_4|NZ_CP019989.1_271589_272246_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|459aa|up_3|NZ_CP019989.1_272245_273622_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|400aa|up_2|NZ_CP019989.1_273751_274951_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|493aa|up_1|NZ_CP019989.1_274940_276419_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|430aa|up_0|NZ_CP019989.1_277767_279057_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
