The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	426740	438585	2802697	integrase	Staphylococcus_phage(33.33%)	14	429762:429782	443267:443287
WP_000264071.1|426740_428207_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424968.1|428231_429773_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
429762:429782	attL	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
WP_000592970.1|429866_431003_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.7e-75
WP_000819103.1|431086_431872_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	58.6	1.2e-09
WP_000494396.1|431988_432216_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000080597.1|432261_432522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000773833.1|432568_432715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058503.1|432707_432932_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	61.8	3.0e-16
WP_001103964.1|432932_433232_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	76.8	1.1e-37
WP_000985238.1|433322_435686_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.2	4.4e-137
WP_001081424.1|436107_436452_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|436676_436883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657541.1|436869_437928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000253082.1|438093_438585_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.2	6.7e-24
443267:443287	attR	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
>prophage 2
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	768668	776488	2802697		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|768668_769724_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|769723_770410_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|770384_770858_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093559.1|771198_771639_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|771919_772504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062967.1|772602_773316_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000941336.1|773319_773739_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|773740_774409_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|774759_775353_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|775336_776488_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 3
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	788458	802774	2802697		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|788458_789517_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|789675_790218_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|790954_791872_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|791962_792070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|792141_793647_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|793986_794487_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|794506_795373_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|796174_796573_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|796535_798641_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|798760_799732_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|800101_801073_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|801059_802016_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|802012_802774_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 4
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	942425	965650	2802697	integrase	Streptococcus_phage(94.74%)	23	930882:930899	969925:969942
930882:930899	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000154905.1|942425_946079_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
WP_000670757.1|946244_947147_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902814.1|947473_947863_+	YisL family protein	NA	NA	NA	NA	NA
WP_001291561.1|948127_949345_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|949426_949630_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|950090_950321_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|950317_950740_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|951244_951598_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|951657_951825_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|951943_953863_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001814923.1|953878_953995_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|954239_955172_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|955168_956170_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|956166_958344_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331163.1|958346_960794_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
WP_000506270.1|960777_961284_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|961258_961756_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|961872_962094_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398286.1|962136_963342_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	99.8	1.1e-232
WP_000879507.1|963364_963517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|963519_964905_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|964933_965320_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|965335_965650_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
969925:969942	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 5
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	992574	1044588	2802697	protease,holin,tRNA,bacteriocin	Streptococcus_phage(40.0%)	52	NA	NA
WP_000448934.1|992574_993564_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|993858_994254_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|994624_995344_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|995464_996451_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|996498_998307_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896695.1|998766_999573_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|999595_999961_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|1000064_1000658_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|1000843_1001191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1001207_1001843_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1001859_1002669_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|1002665_1003520_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1003540_1004926_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1004935_1006780_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933200.1|1007057_1007828_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1008024_1009110_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|1009451_1011020_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|1011161_1011920_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1012113_1012623_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|1012735_1013926_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1013903_1015079_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|1015509_1016994_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|1016974_1017235_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049947.1|1017234_1018797_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|1019098_1019902_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|1020120_1022445_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1022461_1023820_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|1023958_1025470_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287260.1|1025958_1026528_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1026737_1026956_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|1027036_1028023_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1028221_1028398_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1028412_1029015_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1029314_1029392_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|1030026_1030311_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|1030354_1032319_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1032321_1032642_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571192.1|1032638_1033280_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_001796515.1|1033367_1033658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157958947.1|1033747_1033936_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1034024_1034381_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081332.1|1034871_1035831_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001794249.1|1035879_1036011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867362.1|1036074_1036290_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_000620945.1|1036454_1037006_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1037056_1037995_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190616.1|1038176_1039538_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526673.1|1039524_1041198_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150215.1|1041184_1041988_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1041980_1042802_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284455.1|1043039_1043369_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088778.1|1043406_1044588_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	1064371	1072844	2802697		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|1064371_1064854_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_031794888.1|1064840_1065965_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|1065968_1066673_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|1066672_1066936_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1066937_1067609_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|1067601_1069791_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000483707.1|1069769_1071254_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|1071246_1072275_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1072277_1072844_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 7
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	1329181	1334369	2802697		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001807853.1|1329181_1329379_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|1330065_1330293_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|1330593_1330800_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|1331500_1331611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1332003_1332189_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477490.1|1332699_1333116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|1333547_1334132_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|1334195_1334369_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
>prophage 8
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	1511132	1600558	2802697	head,tail,tRNA,holin,plate,portal,protease,integrase,capsid,terminase	Staphylococcus_phage(76.54%)	109	1546069:1546086	1597791:1597808
WP_000858789.1|1511132_1512425_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525056.1|1512746_1515440_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.3	1.4e-46
WP_000049916.1|1515463_1516435_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361538.1|1516421_1517624_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	7.1e-35
WP_000690021.1|1517628_1518771_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1519014_1519332_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_031774809.1|1519666_1520347_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154694.1|1520418_1521006_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005220.1|1520995_1521571_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	1.6e-08
WP_000389530.1|1521584_1522829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245908.1|1522835_1524134_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776339.1|1524143_1525208_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269939.1|1525233_1526400_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1526786_1526987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1527192_1527642_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096479.1|1527733_1528693_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774681.1|1528694_1529420_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1529422_1529995_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1530425_1530698_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161737.1|1530868_1531867_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1531883_1533194_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1533415_1534591_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001825307.1|1534847_1535039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001807839.1|1535155_1535272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644390.1|1535302_1535962_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681742.1|1536038_1537007_+	asparaginase	NA	NA	NA	NA	NA
WP_001174257.1|1537121_1538108_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001807838.1|1538268_1538385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069278.1|1538510_1539965_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902104.1|1540117_1541497_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
WP_001163801.1|1541486_1542440_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1542547_1542796_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186909.1|1542901_1543447_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001825312.1|1543850_1544783_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001807840.1|1545237_1546134_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
1546069:1546086	attL	TTCCATCGTGGAACATCC	NA	NA	NA	NA
WP_001825313.1|1546188_1547118_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000126130.1|1547208_1547424_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_016187462.1|1547639_1548056_-	hypothetical protein	NA	M9QRV7	Staphylococcus_phage	100.0	6.4e-76
WP_000455173.1|1548027_1548555_-	DUF4065 domain-containing protein	NA	M9QX37	Staphylococcus_phage	100.0	3.4e-98
WP_000201920.1|1548576_1548756_-	hypothetical protein	NA	M9QYR8	Staphylococcus_phage	100.0	4.1e-24
WP_001148129.1|1549658_1551104_-	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	96.9	1.7e-288
WP_000354117.1|1551084_1551522_-|holin	phage holin	holin	M9QTA6	Staphylococcus_phage	97.9	3.8e-71
WP_000466774.1|1551657_1551957_-	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	100.0	2.6e-31
WP_000916022.1|1552002_1552167_-	XkdX family protein	NA	M9QX31	Staphylococcus_phage	98.1	1.9e-23
WP_001166606.1|1552159_1552549_-	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	95.3	5.4e-61
WP_031776075.1|1552548_1554015_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.8	4.4e-273
WP_000429556.1|1554014_1555925_-	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.2	0.0e+00
WP_000179864.1|1555940_1556231_-	hypothetical protein	NA	R4WEC3	Staphylococcus_phage	100.0	2.1e-49
WP_000384460.1|1556230_1557814_-|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	99.8	3.5e-308
WP_031775783.1|1557822_1558647_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	7.0e-159
WP_079219800.1|1558646_1564847_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	97.8	0.0e+00
WP_000438833.1|1564860_1565019_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_031775785.1|1565060_1565411_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	99.1	2.0e-54
WP_000169128.1|1565468_1565924_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1566015_1566657_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023808.1|1566691_1567087_-	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	100.0	5.1e-67
WP_031794936.1|1567087_1567489_-	phage protein	NA	A0A0K1LL98	Staphylococcus_phage	99.2	4.0e-67
WP_016187452.1|1567485_1567818_-	hypothetical protein	NA	M9QX19	Staphylococcus_phage	100.0	1.1e-57
WP_000050973.1|1567829_1568108_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_031794937.1|1568176_1569340_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	99.7	2.1e-217
WP_021285854.1|1569351_1570125_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	9.2e-137
WP_001100664.1|1570108_1571347_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153552.1|1571351_1573043_-|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	98.8	0.0e+00
WP_000778933.1|1573032_1573338_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_015994756.1|1573464_1573779_-	HNH endonuclease	NA	A0A0K1LL59	Staphylococcus_phage	100.0	4.2e-56
WP_000513702.1|1573935_1574373_-	transcriptional regulator	NA	B7T0I6	Staphylococcus_virus	100.0	6.1e-77
WP_078100893.1|1574385_1575753_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	98.9	1.1e-260
WP_000665203.1|1575733_1576024_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_078092588.1|1576157_1576256_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	96.9	3.1e-10
WP_079219801.1|1576364_1578812_-	virulence-associated E family protein	NA	R4WAL1	Staphylococcus_phage	99.4	0.0e+00
WP_000265253.1|1579099_1579300_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	98.5	4.9e-26
WP_000595260.1|1579367_1579520_-	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_000592221.1|1579516_1579903_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	1.0e-64
WP_000195803.1|1579899_1580106_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000185680.1|1580142_1580679_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_001065067.1|1580671_1580920_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	93.9	1.7e-36
WP_001105602.1|1580912_1581278_-	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	97.3	7.4e-52
WP_000982714.1|1581274_1581712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000983950.1|1581708_1581903_-	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	96.8	1.4e-25
WP_000695771.1|1581899_1582307_-	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
WP_000693989.1|1582309_1582516_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_079219802.1|1582529_1582778_-	hypothetical protein	NA	A7TWH1	Staphylococcus_phage	98.8	3.0e-41
WP_079219803.1|1582786_1582948_-	hypothetical protein	NA	A7TWH0	Staphylococcus_phage	100.0	1.7e-21
WP_079219836.1|1582959_1584912_-	DNA polymerase	NA	M9QT72	Staphylococcus_phage	98.9	0.0e+00
WP_000645042.1|1584980_1585538_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_079219804.1|1585563_1586730_-	DUF2800 domain-containing protein	NA	M1T2Z7	Staphylococcus_phage	98.7	1.7e-219
WP_031863778.1|1586726_1587089_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	98.3	7.1e-55
WP_000174994.1|1587103_1587427_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285948.1|1587505_1587667_-	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_001596347.1|1587679_1587943_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	98.9	2.5e-46
WP_001097552.1|1587969_1588185_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1588239_1588605_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1588573_1588819_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000773059.1|1588885_1589266_+	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
WP_001148860.1|1589252_1589450_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
WP_000362644.1|1589519_1589732_+	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
WP_000771849.1|1589772_1589922_-	hypothetical protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
WP_031886646.1|1589950_1590727_-	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	89.9	2.4e-124
WP_001114715.1|1590765_1590975_-	helix-turn-helix transcriptional regulator	NA	A0A059T617	Staphylococcus_phage	100.0	4.8e-32
WP_000455972.1|1591137_1591464_+	helix-turn-helix transcriptional regulator	NA	A0A059T5A2	Staphylococcus_phage	100.0	7.0e-54
WP_000521395.1|1591485_1591944_+	hypothetical protein	NA	B2ZYU2	Staphylococcus_phage	100.0	1.2e-83
WP_079219805.1|1591961_1592546_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	99.0	2.6e-67
WP_001795334.1|1592775_1592922_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191464.1|1592918_1593533_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_031585161.1|1593658_1594864_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	99.8	3.8e-222
WP_014532489.1|1594906_1596934_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	95.3	2.7e-111
WP_001825329.1|1596926_1597856_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
1597791:1597808	attR	TTCCATCGTGGAACATCC	NA	NA	NA	NA
WP_000987760.1|1598100_1599852_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
WP_000064078.1|1599832_1600558_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 9
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	1655680	1663992	2802697	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1655680_1656466_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1656591_1657482_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062170.1|1657491_1658838_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000683941.1|1658951_1660052_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1660054_1660732_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1660862_1661969_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1662192_1663992_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 10
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	1733416	1742459	2802697	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1733416_1733935_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|1733956_1736230_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|1736432_1738712_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_079219811.1|1738986_1739247_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1739265_1740405_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|1740427_1741453_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|1741454_1742459_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2802697	1871661	1919515	2802697	protease,transposase,tRNA	Staphylococcus_phage(91.89%)	47	NA	NA
WP_001050515.1|1871661_1878210_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|1878533_1878845_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|1878866_1881284_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|1881571_1882753_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1882862_1883816_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|1883812_1884376_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|1884494_1884896_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1885468_1886296_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1886298_1886418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1886529_1887531_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|1887658_1888117_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|1888129_1889311_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|1889321_1889954_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077346.1|1889960_1891004_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|1891484_1892987_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1893637_1893952_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|1893951_1895244_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|1895330_1896185_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1896460_1896685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|1896883_1897354_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|1897466_1897910_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|1897896_1898340_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001168915.1|1898637_1899273_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|1899439_1900060_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1900622_1901336_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1901594_1901897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|1902151_1902517_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|1902513_1902867_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|1903116_1903950_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|1904161_1905070_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|1905194_1906388_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|1906759_1908352_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|1908648_1909395_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|1909399_1909873_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_031794906.1|1909938_1910196_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	9.4e-46
WP_000778553.1|1910192_1911194_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|1911198_1912677_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|1912835_1913291_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|1913593_1914256_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|1914336_1915332_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|1915407_1916034_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|1916074_1916419_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|1916516_1917089_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|1917286_1917844_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|1918214_1918391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|1918401_1918785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|1919233_1919515_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
