assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	1	307750-307949	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	31	2	2	307781-307805|307837-307861	NZ_CP020019.1_307950-307974|NZ_CP020019.1_2152305-2152329	NA	3	3	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA|131aa|down_5|NZ_CP020019.1_313125_313518_+	NA|574aa|up_9|NZ_CP020019.1_295196_296918_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_CP020019.1_297061_297736_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|up_7|NZ_CP020019.1_297982_299737_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_CP020019.1_299739_300480_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_CP020019.1_300592_301036_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_CP020019.1_301028_301730_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_CP020019.1_302070_304362_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_CP020019.1_304587_305292_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP020019.1_305440_306232_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP020019.1_306247_307684_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP020019.1_308259_309021_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|NZ_CP020019.1_309272_310187_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|NZ_CP020019.1_310214_310619_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|NZ_CP020019.1_310633_311515_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|NZ_CP020019.1_311746_312745_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|NZ_CP020019.1_313125_313518_+	NA	NA|459aa|down_6|NZ_CP020019.1_313646_315023_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_CP020019.1_315256_316249_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|NZ_CP020019.1_316574_317525_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|NZ_CP020019.1_317576_318236_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	2	674507-674615	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA|169aa|down_4|NZ_CP020019.1_678348_678855_+,NA|239aa|down_5|NZ_CP020019.1_679016_679733_+	NA|209aa|up_9|NZ_CP020019.1_664011_664638_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|NZ_CP020019.1_664907_665846_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|NZ_CP020019.1_666291_666828_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|NZ_CP020019.1_666997_667474_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|NZ_CP020019.1_667513_668809_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|NZ_CP020019.1_668836_669358_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|NZ_CP020019.1_669856_670867_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_2|NZ_CP020019.1_671142_671559_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP020019.1_671555_673217_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP020019.1_673701_674337_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP020019.1_674666_675554_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP020019.1_675704_676655_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP020019.1_676709_677429_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP020019.1_677412_678213_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP020019.1_678348_678855_+	NA	NA|239aa|down_5|NZ_CP020019.1_679016_679733_+	NA	NA|263aa|down_6|NZ_CP020019.1_679901_680690_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP020019.1_680941_681316_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP020019.1_682263_683193_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP020019.1_683385_683610_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	3	836794-836876	3	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	CACCCCAACTCGCATTGCTTGTAGAA	26	1	25	836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850|836820-836850	NZ_CP020019.1_931108-931078|NZ_CP020019.1_969909-969939|NZ_CP020019.1_1998117-1998147|NZ_CP020019.1_1998227-1998257|NZ_CP020019.1_2066485-2066515|NZ_CP020019.1_289820-289850|NZ_CP020019.1_289878-289908|NZ_CP020019.1_383562-383532|NZ_CP020019.1_666004-665974|NZ_CP020019.1_790507-790477|NZ_CP020019.1_881739-881769|NZ_CP020019.1_1062876-1062906|NZ_CP020019.1_1163194-1163164|NZ_CP020019.1_1163248-1163218|NZ_CP020019.1_1809572-1809542|NZ_CP020019.1_1900358-1900328|NZ_CP020019.1_2315729-2315759|NZ_CP020019.1_2360853-2360823|NZ_CP020019.1_845801-845831|NZ_CP020019.1_885877-885847|NZ_CP020019.1_1372139-1372169|NZ_CP020019.1_1418229-1418259|NZ_CP020019.1_2326477-2326507|NZ_CP020019.1_2326532-2326562|NZ_CP020019.1_2762114-2762144	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA	NA|280aa|up_9|NZ_CP020019.1_824043_824883_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP020019.1_825056_825707_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP020019.1_825703_825940_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP020019.1_826208_828194_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP020019.1_828201_831048_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP020019.1_831657_832590_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP020019.1_832595_833435_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP020019.1_833442_833928_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP020019.1_833935_835375_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_CP020019.1_835441_836377_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP020019.1_837144_838056_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP020019.1_838052_839048_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP020019.1_839156_840101_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP020019.1_840670_841258_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_CP020019.1_841440_843075_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_CP020019.1_843281_844184_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_CP020019.1_844886_845516_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP020019.1_846290_847304_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP020019.1_847356_848367_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP020019.1_848505_849696_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	4	886146-886226	4	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	886171-886201	NZ_CP020019.1_831247-831217	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA|105aa|down_7|NZ_CP020019.1_893832_894147_-	NA|180aa|up_9|NZ_CP020019.1_878276_878816_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NZ_CP020019.1_878965_879286_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NZ_CP020019.1_879429_879786_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NZ_CP020019.1_879943_880324_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_5|NZ_CP020019.1_880503_881382_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|up_4|NZ_CP020019.1_882083_882470_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_3|NZ_CP020019.1_882462_882759_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_2|NZ_CP020019.1_883008_884034_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_1|NZ_CP020019.1_884026_884722_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_0|NZ_CP020019.1_884739_885561_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_0|NZ_CP020019.1_886368_886563_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NZ_CP020019.1_886796_887648_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NZ_CP020019.1_887975_888737_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|NZ_CP020019.1_888835_890143_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_4|NZ_CP020019.1_890248_891499_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NZ_CP020019.1_891488_891953_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NZ_CP020019.1_892103_893501_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|NZ_CP020019.1_893832_894147_-	NA	NA|347aa|down_8|NZ_CP020019.1_894515_895556_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|NZ_CP020019.1_895569_896637_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	5	1812005-1812087	5	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA	NA|454aa|up_9|NZ_CP020019.1_1796838_1798200_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NZ_CP020019.1_1798543_1800301_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NZ_CP020019.1_1800322_1801291_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NZ_CP020019.1_1801559_1802504_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NZ_CP020019.1_1802503_1803361_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NZ_CP020019.1_1803555_1804785_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NZ_CP020019.1_1805233_1808431_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NZ_CP020019.1_1808451_1809393_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NZ_CP020019.1_1809762_1811061_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NZ_CP020019.1_1811265_1811679_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NZ_CP020019.1_1812184_1812874_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NZ_CP020019.1_1813048_1814104_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NZ_CP020019.1_1814419_1815538_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NZ_CP020019.1_1815678_1816179_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NZ_CP020019.1_1816425_1817628_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NZ_CP020019.1_1817715_1818663_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NZ_CP020019.1_1818785_1819280_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NZ_CP020019.1_1819377_1820148_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NZ_CP020019.1_1820191_1821415_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NZ_CP020019.1_1821414_1822563_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	6	1900367-1900460	6	CRISPRCasFinder	no	csa3	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Type I-A	GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	34	1	1	1900401-1900426	NZ_CP020019.1_1998189-1998164	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|75aa|up_5|NZ_CP020019.1_1896460_1896685_-,NA|148aa|up_2|NZ_CP020019.1_1897896_1898340_-,NA|101aa|down_1|NZ_CP020019.1_1901594_1901897_+	NA|501aa|up_9|NZ_CP020019.1_1891484_1892987_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NZ_CP020019.1_1893637_1893952_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NZ_CP020019.1_1893951_1895244_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NZ_CP020019.1_1895330_1896185_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NZ_CP020019.1_1896460_1896685_-	NA	NA|157aa|up_4|NZ_CP020019.1_1896883_1897354_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NZ_CP020019.1_1897466_1897910_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NZ_CP020019.1_1897896_1898340_-	NA	NA|212aa|up_1|NZ_CP020019.1_1898637_1899273_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|NZ_CP020019.1_1899439_1900060_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|NZ_CP020019.1_1900622_1901336_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|NZ_CP020019.1_1901594_1901897_+	NA	NA|122aa|down_2|NZ_CP020019.1_1902151_1902517_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|NZ_CP020019.1_1902513_1902867_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|NZ_CP020019.1_1903116_1903950_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|NZ_CP020019.1_1904161_1905070_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|NZ_CP020019.1_1905194_1906388_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|NZ_CP020019.1_1906759_1908352_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|NZ_CP020019.1_1908648_1909395_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|NZ_CP020019.1_1909399_1909873_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	7	2141231-2141443	7	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|46aa|up_4|NZ_CP020019.1_2138092_2138230_-,NA|107aa|down_0|NZ_CP020019.1_2141476_2141797_+	NA|232aa|up_9|NZ_CP020019.1_2130784_2131480_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_8|NZ_CP020019.1_2131832_2133353_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_7|NZ_CP020019.1_2133868_2135224_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_6|NZ_CP020019.1_2135238_2136309_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_5|NZ_CP020019.1_2136626_2137829_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_4|NZ_CP020019.1_2138092_2138230_-	NA	NA|70aa|up_3|NZ_CP020019.1_2138357_2138567_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_2|NZ_CP020019.1_2138578_2138872_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_1|NZ_CP020019.1_2139037_2140522_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|216aa|up_0|NZ_CP020019.1_2140549_2141197_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|107aa|down_0|NZ_CP020019.1_2141476_2141797_+	NA	NA|291aa|down_1|NZ_CP020019.1_2143438_2144311_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_2|NZ_CP020019.1_2144396_2145038_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_3|NZ_CP020019.1_2145039_2145831_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_4|NZ_CP020019.1_2145814_2146645_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_5|NZ_CP020019.1_2146637_2147327_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_6|NZ_CP020019.1_2147713_2148409_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_7|NZ_CP020019.1_2148797_2149193_-	pfam00436, SSB, Single-strand binding protein family	NA|147aa|down_8|NZ_CP020019.1_2149386_2149827_+	pfam14183, YwpF, YwpF-like protein	NA|147aa|down_9|NZ_CP020019.1_2149883_2150324_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	8	2196862-2197012	8	CRISPRCasFinder	no	csa3,TnsE_C	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|77aa|up_5|NZ_CP020019.1_2191734_2191965_-,NA|364aa|up_0|NZ_CP020019.1_2195752_2196844_+,NA|35aa|down_0|NZ_CP020019.1_2197341_2197446_-,NA|53aa|down_1|NZ_CP020019.1_2198125_2198284_+,NA|31aa|down_2|NZ_CP020019.1_2198719_2198812_+	NA|237aa|up_9|NZ_CP020019.1_2187344_2188055_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP020019.1_2188175_2188619_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP020019.1_2188818_2189232_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP020019.1_2189689_2191063_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP020019.1_2191734_2191965_-	NA	NA|313aa|up_4|NZ_CP020019.1_2191995_2192934_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP020019.1_2193367_2194033_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP020019.1_2194184_2194505_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP020019.1_2194506_2195487_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP020019.1_2195752_2196844_+	NA	NA|35aa|down_0|NZ_CP020019.1_2197341_2197446_-	NA	NA|53aa|down_1|NZ_CP020019.1_2198125_2198284_+	NA	NA|31aa|down_2|NZ_CP020019.1_2198719_2198812_+	NA	NA|286aa|down_3|NZ_CP020019.1_2198941_2199799_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP020019.1_2199866_2200649_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_5|NZ_CP020019.1_2200938_2201547_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_6|NZ_CP020019.1_2201574_2202609_-	pfam13676, TIR_2, TIR domain	NA|490aa|down_7|NZ_CP020019.1_2202702_2204172_-	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|97aa|down_8|NZ_CP020019.1_2204231_2204522_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	TnsE_C|135aa|down_9|NZ_CP020019.1_2204646_2205051_-	pfam18623, TnsE_C, TnsE C-terminal domain
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	9	2360905-2360990	9	CRISPRCasFinder	no	WYL	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	2360935-2360960|2360935-2360960|2360935-2360960|2360935-2360960|2360935-2360960|2360935-2360960|2360935-2360960	NZ_CP020019.1_1684107-1684082|NZ_CP020019.1_881828-881803|NZ_CP020019.1_885948-885973|NZ_CP020019.1_930883-930908|NZ_CP020019.1_1367810-1367835|NZ_CP020019.1_2152343-2152368|NZ_CP020019.1_2492919-2492894	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|65aa|up_6|NZ_CP020019.1_2353649_2353844_-,NA|78aa|down_1|NZ_CP020019.1_2361940_2362174_-,NA|110aa|down_8|NZ_CP020019.1_2370262_2370592_+	NA|248aa|up_9|NZ_CP020019.1_2349437_2350181_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|652aa|up_8|NZ_CP020019.1_2350206_2352162_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|270aa|up_7|NZ_CP020019.1_2352771_2353581_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|65aa|up_6|NZ_CP020019.1_2353649_2353844_-	NA	NA|467aa|up_5|NZ_CP020019.1_2354017_2355418_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_4|NZ_CP020019.1_2355512_2356595_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_3|NZ_CP020019.1_2356842_2357265_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|up_2|NZ_CP020019.1_2357501_2358002_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|318aa|up_1|NZ_CP020019.1_2358364_2359318_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_0|NZ_CP020019.1_2359409_2360534_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|259aa|down_0|NZ_CP020019.1_2361142_2361919_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|NZ_CP020019.1_2361940_2362174_-	NA	NA|158aa|down_2|NZ_CP020019.1_2362468_2362942_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|NZ_CP020019.1_2362941_2365896_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|316aa|down_4|NZ_CP020019.1_2366497_2367445_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|NZ_CP020019.1_2367577_2368375_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|NZ_CP020019.1_2368759_2369452_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|NZ_CP020019.1_2369476_2370214_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|NZ_CP020019.1_2370262_2370592_+	NA	NA|291aa|down_9|NZ_CP020019.1_2371036_2371909_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	10	2537183-2537277	10	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	AGGCTCTTATGCAGTTGGTGCGAAGCAA	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|249aa|up_9|NZ_CP020019.1_2526768_2527515_+,NA|121aa|down_0|NZ_CP020019.1_2537945_2538308_-,NA|105aa|down_8|NZ_CP020019.1_2545120_2545435_+	NA|249aa|up_9|NZ_CP020019.1_2526768_2527515_+	NA	NA|398aa|up_8|NZ_CP020019.1_2527738_2528932_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|NZ_CP020019.1_2528943_2529693_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|NZ_CP020019.1_2529685_2530501_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|NZ_CP020019.1_2530497_2531367_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|NZ_CP020019.1_2531363_2532299_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|NZ_CP020019.1_2532311_2533910_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|NZ_CP020019.1_2534052_2535354_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|NZ_CP020019.1_2535346_2536165_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|NZ_CP020019.1_2536175_2536997_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|NZ_CP020019.1_2537945_2538308_-	NA	NA|273aa|down_1|NZ_CP020019.1_2538570_2539389_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|NZ_CP020019.1_2539622_2541161_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|NZ_CP020019.1_2541272_2541695_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|133aa|down_4|NZ_CP020019.1_2542166_2542565_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|down_5|NZ_CP020019.1_2542591_2543002_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|128aa|down_6|NZ_CP020019.1_2543456_2543840_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|403aa|down_7|NZ_CP020019.1_2543906_2545115_+	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|105aa|down_8|NZ_CP020019.1_2545120_2545435_+	NA	NA|140aa|down_9|NZ_CP020019.1_2547311_2547731_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)
GCF_002025125.1_ASM202512v1	NZ_CP020019	Staphylococcus aureus strain 08S00974 chromosome, complete genome	11	2565128-2565238	11	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	GGTACTTCTGGTGTCGGTGGCGTTGGT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|89aa|up_2|NZ_CP020019.1_2559431_2559698_+,NA|103aa|up_1|NZ_CP020019.1_2559841_2560150_+,NA	NA|452aa|up_9|NZ_CP020019.1_2550825_2552181_-	cd00519, Lipase_3, Lipase (class 3)	NA|262aa|up_8|NZ_CP020019.1_2552177_2552963_-	pfam04507, DUF576, Csa1 family	NA|255aa|up_7|NZ_CP020019.1_2553210_2553975_-	pfam04507, DUF576, Csa1 family	NA|258aa|up_6|NZ_CP020019.1_2554086_2554860_-	pfam04507, DUF576, Csa1 family	NA|310aa|up_5|NZ_CP020019.1_2555102_2556032_-	pfam09019, EcoRII-C, EcoRII C terminal	NA|398aa|up_4|NZ_CP020019.1_2556127_2557321_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|584aa|up_3|NZ_CP020019.1_2557396_2559148_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|89aa|up_2|NZ_CP020019.1_2559431_2559698_+	NA	NA|103aa|up_1|NZ_CP020019.1_2559841_2560150_+	NA	NA|289aa|up_0|NZ_CP020019.1_2560275_2561142_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|453aa|down_0|NZ_CP020019.1_2568378_2569737_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|518aa|down_1|NZ_CP020019.1_2569853_2571407_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|226aa|down_2|NZ_CP020019.1_2571431_2572109_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|255aa|down_3|NZ_CP020019.1_2572265_2573030_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|231aa|down_4|NZ_CP020019.1_2573194_2573887_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|139aa|down_5|NZ_CP020019.1_2574117_2574534_-	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|608aa|down_6|NZ_CP020019.1_2574672_2576496_-	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|426aa|down_7|NZ_CP020019.1_2577407_2578685_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|204aa|down_8|NZ_CP020019.1_2579231_2579843_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|388aa|down_9|NZ_CP020019.1_2579940_2581104_-	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily
