assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	1	144343-144424	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	144367-144400|144367-144400	NZ_CP020020.1_1427093-1427060|NZ_CP020020.1_1205220-1205253	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|402aa|up_9|NZ_CP020020.1_133488_134694_+,NA|68aa|down_0|NZ_CP020020.1_144487_144691_-	NA|402aa|up_9|NZ_CP020020.1_133488_134694_+	NA	NA|402aa|up_8|NZ_CP020020.1_134694_135900_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP020020.1_135910_136468_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP020020.1_136467_137355_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP020020.1_137408_138671_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP020020.1_138747_139893_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP020020.1_139957_140284_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP020020.1_140290_140674_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP020020.1_141100_142588_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP020020.1_143234_144194_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP020020.1_144487_144691_-	NA	NA|171aa|down_1|NZ_CP020020.1_144869_145382_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP020020.1_145723_146464_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP020020.1_146477_147452_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP020020.1_147448_148210_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP020020.1_148222_149254_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP020020.1_149470_149830_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP020020.1_150003_151029_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP020020.1_151414_152665_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP020020.1_153111_160287_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2	267588-267728	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	53	1	9	267641-267675|267641-267675|267641-267675|267641-267675|267641-267675|267641-267675|267641-267675|267641-267675|267641-267675	NZ_CP020020.1_838707-838673|NZ_CP020020.1_838763-838729|NZ_CP020020.1_1205299-1205333|NZ_CP020020.1_2293757-2293723|NZ_CP020020.1_2458271-2458237|NZ_CP020020.1_2730881-2730847|NZ_CP020020.1_758183-758217|NZ_CP020020.1_1117083-1117117|NZ_CP020020.1_2327991-2328025	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_1|NZ_CP020020.1_268758_268893_+	NA|563aa|up_9|NZ_CP020020.1_256054_257743_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|up_8|NZ_CP020020.1_257775_259497_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_7|NZ_CP020020.1_259640_260315_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_6|NZ_CP020020.1_260574_262314_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_5|NZ_CP020020.1_262316_263057_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_4|NZ_CP020020.1_263169_263613_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_3|NZ_CP020020.1_263605_264307_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|235aa|up_2|NZ_CP020020.1_264414_265119_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP020020.1_265267_266059_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP020020.1_266074_267511_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP020020.1_267978_268740_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|45aa|down_1|NZ_CP020020.1_268758_268893_+	NA	NA|305aa|down_2|NZ_CP020020.1_268990_269905_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_3|NZ_CP020020.1_269932_270337_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_4|NZ_CP020020.1_270351_271233_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_5|NZ_CP020020.1_271464_272463_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|459aa|down_6|NZ_CP020020.1_272946_274323_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_CP020020.1_274556_275549_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|NZ_CP020020.1_275874_276825_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|220aa|down_9|NZ_CP020020.1_276876_277536_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	3	695739-695837	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP020020.1_693766_693883_+,NA|230aa|down_2|NZ_CP020020.1_697658_698348_-,NA|130aa|down_4|NZ_CP020020.1_698984_699374_+,NA|100aa|down_5|NZ_CP020020.1_699511_699811_+	NA|336aa|up_9|NZ_CP020020.1_685545_686553_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP020020.1_687141_687939_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP020020.1_688299_688944_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP020020.1_689640_691791_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP020020.1_691936_692296_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP020020.1_692485_693202_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP020020.1_693201_693675_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP020020.1_693766_693883_+	NA	NA|215aa|up_1|NZ_CP020020.1_694027_694672_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP020020.1_694787_695654_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP020020.1_695854_697075_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP020020.1_697071_697560_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP020020.1_697658_698348_-	NA	NA|148aa|down_3|NZ_CP020020.1_698474_698918_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_4|NZ_CP020020.1_698984_699374_+	NA	NA|100aa|down_5|NZ_CP020020.1_699511_699811_+	NA	NA|181aa|down_6|NZ_CP020020.1_699890_700433_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP020020.1_700528_701095_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP020020.1_701096_701555_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP020020.1_701557_702241_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	4	748633-748715	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_CP020020.1_735290_735497_+,NA|34aa|down_1|NZ_CP020020.1_750170_750272_+,NA|52aa|down_8|NZ_CP020020.1_758451_758607_+	NA|69aa|up_9|NZ_CP020020.1_735290_735497_+	NA	NA|237aa|up_8|NZ_CP020020.1_735584_736295_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP020020.1_736278_737283_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP020020.1_737756_739697_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP020020.1_739966_741850_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP020020.1_741861_743643_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP020020.1_743864_744842_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP020020.1_744834_746349_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP020020.1_746588_747647_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP020020.1_747941_748484_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP020020.1_749163_750081_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP020020.1_750170_750272_+	NA	NA|502aa|down_2|NZ_CP020020.1_750349_751855_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP020020.1_752195_752696_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP020020.1_752715_753582_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP020020.1_754382_754781_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP020020.1_754743_756849_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP020020.1_756966_757938_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP020020.1_758451_758607_+	NA	NA|324aa|down_9|NZ_CP020020.1_758645_759617_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	5	795150-795232	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCATTGTCTGTAGAAATT	25	1	1	795175-795207	NZ_CP020020.1_1940254-1940286	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP020020.1_782388_783228_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP020020.1_783401_784052_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP020020.1_784048_784285_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP020020.1_784553_786539_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP020020.1_786546_789393_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP020020.1_790012_790945_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP020020.1_790950_791790_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP020020.1_791797_792283_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP020020.1_792290_793730_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP020020.1_793796_794732_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP020020.1_795497_796409_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP020020.1_796405_797401_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP020020.1_797511_798456_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP020020.1_799028_799616_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP020020.1_799858_800761_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP020020.1_801463_802093_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP020020.1_802796_803810_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP020020.1_803862_804873_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP020020.1_805011_806202_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP020020.1_806323_807085_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	6	838290-838371	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	838314-838347|838314-838347	NZ_CP020020.1_1427060-1427093|NZ_CP020020.1_1205253-1205220	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP020020.1_837192_837306_+,NA	NA|206aa|up_9|NZ_CP020020.1_832047_832665_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP020020.1_832819_833314_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP020020.1_833712_834135_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP020020.1_834282_834999_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP020020.1_835081_835621_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP020020.1_835770_836091_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP020020.1_836234_836591_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP020020.1_836748_837129_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP020020.1_837192_837306_+	NA	NA|293aa|up_0|NZ_CP020020.1_837307_838186_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP020020.1_839095_839482_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP020020.1_839474_839771_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP020020.1_840020_841046_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP020020.1_841038_841734_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP020020.1_841751_842573_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP020020.1_842715_843936_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP020020.1_844023_844752_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP020020.1_844775_845504_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_8|NZ_CP020020.1_845678_846413_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_9|NZ_CP020020.1_846562_846775_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	7	1120970-1121156	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	39	1120989-1121025|1120989-1121025|1120989-1121025|1120989-1121025|1120989-1121025|1120989-1121025|1120989-1121025|1120989-1121025|1120989-1121025|1120989-1121025|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121045-1121081|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137|1121101-1121137	NZ_CP020020.1_2293707-2293671|NZ_CP020020.1_1338061-1338097|NZ_CP020020.1_2483564-2483600|NZ_CP020020.1_144327-144363|NZ_CP020020.1_789753-789717|NZ_CP020020.1_838387-838351|NZ_CP020020.1_902596-902632|NZ_CP020020.1_1611673-1611637|NZ_CP020020.1_1949675-1949639|NZ_CP020020.1_2616422-2616458|NZ_CP020020.1_347529-347565|NZ_CP020020.1_802399-802363|NZ_CP020020.1_1018642-1018606|NZ_CP020020.1_1611731-1611695|NZ_CP020020.1_1938924-1938888|NZ_CP020020.1_2327985-2328021|NZ_CP020020.1_1427134-1427098|NZ_CP020020.1_2293763-2293727|NZ_CP020020.1_2565869-2565833|NZ_CP020020.1_838657-838621|NZ_CP020020.1_838713-838677|NZ_CP020020.1_838769-838733|NZ_CP020020.1_1121157-1121193|NZ_CP020020.1_1205293-1205329|NZ_CP020020.1_1205349-1205385|NZ_CP020020.1_2458277-2458241|NZ_CP020020.1_748621-748657|NZ_CP020020.1_1427076-1427040|NZ_CP020020.1_1472101-1472137|NZ_CP020020.1_1472157-1472193|NZ_CP020020.1_1940325-1940289|NZ_CP020020.1_1940384-1940348|NZ_CP020020.1_2328041-2328077|NZ_CP020020.1_2730999-2730963|NZ_CP020020.1_795246-795210|NZ_CP020020.1_1205237-1205273|NZ_CP020020.1_2565813-2565777|NZ_CP020020.1_2730943-2730907|NZ_CP020020.1_1732039-1732075	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_7|NZ_CP020020.1_1114978_1115485_+,NA|62aa|up_4|NZ_CP020020.1_1117337_1117523_-,NA|78aa|up_3|NZ_CP020020.1_1118144_1118378_-,NA|49aa|up_1|NZ_CP020020.1_1120486_1120633_+,NA|75aa|up_0|NZ_CP020020.1_1120589_1120814_+,NA|76aa|down_5|NZ_CP020020.1_1128169_1128397_+	NA|110aa|up_9|NZ_CP020020.1_1113207_1113537_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|NZ_CP020020.1_1113906_1114308_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP020020.1_1114978_1115485_+	NA	NA|166aa|up_6|NZ_CP020020.1_1115743_1116241_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP020020.1_1116391_1116742_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP020020.1_1117337_1117523_-	NA	NA|78aa|up_3|NZ_CP020020.1_1118144_1118378_-	NA	NA|320aa|up_2|NZ_CP020020.1_1118854_1119814_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP020020.1_1120486_1120633_+	NA	NA|75aa|up_0|NZ_CP020020.1_1120589_1120814_+	NA	NA|242aa|down_0|NZ_CP020020.1_1122194_1122920_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP020020.1_1123014_1123740_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_2|NZ_CP020020.1_1124177_1125179_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_3|NZ_CP020020.1_1125201_1126134_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_4|NZ_CP020020.1_1126356_1127862_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_5|NZ_CP020020.1_1128169_1128397_+	NA	NA|316aa|down_6|NZ_CP020020.1_1128701_1129649_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_7|NZ_CP020020.1_1129897_1130086_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_8|NZ_CP020020.1_1130997_1131132_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|45aa|down_9|NZ_CP020020.1_1131188_1131323_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	8	1732067-1732153	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|33aa|down_4|NZ_CP020020.1_1736477_1736576_-	NA|423aa|up_9|NZ_CP020020.1_1714468_1715737_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP020020.1_1715785_1716907_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP020020.1_1717255_1718617_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP020020.1_1720941_1722699_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP020020.1_1722720_1723689_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP020020.1_1723957_1724902_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP020020.1_1724901_1725759_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP020020.1_1725953_1727183_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP020020.1_1727632_1730830_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP020020.1_1730850_1731792_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP020020.1_1732243_1733542_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP020020.1_1733746_1734160_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP020020.1_1734464_1735154_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP020020.1_1735328_1736384_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|33aa|down_4|NZ_CP020020.1_1736477_1736576_-	NA	NA|373aa|down_5|NZ_CP020020.1_1736699_1737818_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP020020.1_1737958_1738459_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP020020.1_1738704_1739907_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP020020.1_1739994_1740942_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP020020.1_1741064_1741559_-	PRK00522, tpx, thiol peroxidase
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	9	2176945-2177101	1	PILER-CR	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	41	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP020020.1_2171820_2172051_-,NA|364aa|up_0|NZ_CP020020.1_2175840_2176932_+,NA|31aa|down_0|NZ_CP020020.1_2177197_2177290_+,NA|26aa|down_1|NZ_CP020020.1_2177856_2177934_-	NA|237aa|up_9|NZ_CP020020.1_2167429_2168140_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP020020.1_2168260_2168704_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP020020.1_2168903_2169317_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP020020.1_2169773_2171147_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP020020.1_2171820_2172051_-	NA	NA|313aa|up_4|NZ_CP020020.1_2172081_2173020_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP020020.1_2173455_2174121_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP020020.1_2174272_2174593_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP020020.1_2174594_2175575_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP020020.1_2175840_2176932_+	NA	NA|31aa|down_0|NZ_CP020020.1_2177197_2177290_+	NA	NA|26aa|down_1|NZ_CP020020.1_2177856_2177934_-	NA	NA|379aa|down_2|NZ_CP020020.1_2178639_2179776_-	pfam02037, SAP, SAP domain	NA|286aa|down_3|NZ_CP020020.1_2180784_2181642_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP020020.1_2181709_2182492_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP020020.1_2182723_2184529_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP020020.1_2185209_2186748_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP020020.1_2186782_2188915_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP020020.1_2188926_2189361_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP020020.1_2189360_2190467_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002025145.1_ASM202514v1	NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	10	2616438-2616519	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	2616462-2616495|2616462-2616495	NZ_CP020020.1_1427093-1427060|NZ_CP020020.1_1205220-1205253	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|163aa|up_9|NZ_CP020020.1_2606851_2607340_-,NA|43aa|up_3|NZ_CP020020.1_2614219_2614348_-,NA|167aa|up_1|NZ_CP020020.1_2615269_2615770_+,NA	NA|163aa|up_9|NZ_CP020020.1_2606851_2607340_-	NA	NA|256aa|up_8|NZ_CP020020.1_2607514_2608282_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|up_7|NZ_CP020020.1_2608642_2610454_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|163aa|up_6|NZ_CP020020.1_2610964_2611453_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|234aa|up_5|NZ_CP020020.1_2611728_2612430_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|up_4|NZ_CP020020.1_2613037_2614093_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|43aa|up_3|NZ_CP020020.1_2614219_2614348_-	NA	NA|190aa|up_2|NZ_CP020020.1_2614502_2615072_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|167aa|up_1|NZ_CP020020.1_2615269_2615770_+	NA	NA|77aa|up_0|NZ_CP020020.1_2615989_2616220_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_0|NZ_CP020020.1_2616623_2617001_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|274aa|down_1|NZ_CP020020.1_2617017_2617839_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|100aa|down_2|NZ_CP020020.1_2617858_2618158_-	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_3|NZ_CP020020.1_2618289_2618847_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_4|NZ_CP020020.1_2618839_2619544_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|337aa|down_5|NZ_CP020020.1_2619630_2620641_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|277aa|down_6|NZ_CP020020.1_2620660_2621491_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|297aa|down_7|NZ_CP020020.1_2621637_2622528_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|447aa|down_8|NZ_CP020020.1_2622624_2623965_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|369aa|down_9|NZ_CP020020.1_2623958_2625065_-	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase
