assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	1	279333-279431	1	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GTCACCACCAACGGTGGTGACCTACC	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|304aa|down_6|NZ_CP018756.1_286150_287062_-,NA|293aa|down_7|NZ_CP018756.1_287190_288069_-,NA|246aa|down_8|NZ_CP018756.1_288170_288908_-	NA|737aa|up_9|NZ_CP018756.1_266238_268449_+	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|285aa|up_8|NZ_CP018756.1_269095_269950_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|280aa|up_7|NZ_CP018756.1_269946_270786_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|397aa|up_6|NZ_CP018756.1_270876_272067_+	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional	NA|122aa|up_5|NZ_CP018756.1_272100_272466_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|183aa|up_4|NZ_CP018756.1_272898_273447_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|242aa|up_3|NZ_CP018756.1_273521_274247_+	PRK09926, PRK09926, fimbrial chaperone	NA|875aa|up_2|NZ_CP018756.1_274280_276905_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|345aa|up_1|NZ_CP018756.1_276895_277930_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|439aa|up_0|NZ_CP018756.1_277992_279309_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|555aa|down_0|NZ_CP018756.1_279471_281136_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|160aa|down_1|NZ_CP018756.1_281389_281869_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|418aa|down_2|NZ_CP018756.1_282047_283301_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|145aa|down_3|NZ_CP018756.1_283384_283819_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|174aa|down_4|NZ_CP018756.1_283913_284435_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|362aa|down_5|NZ_CP018756.1_284546_285632_+	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|304aa|down_6|NZ_CP018756.1_286150_287062_-	NA	NA|293aa|down_7|NZ_CP018756.1_287190_288069_-	NA	NA|246aa|down_8|NZ_CP018756.1_288170_288908_-	NA	NA|208aa|down_9|NZ_CP018756.1_288961_289585_-	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	2	478713-478846	2	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	CTGTTGGTGGGTGCCGACCGTTGGTCGGCACATCTGTCAGATATCGA	47	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|168aa|down_8|NZ_CP018756.1_489807_490311_+	NA|148aa|up_9|NZ_CP018756.1_468696_469140_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|456aa|up_8|NZ_CP018756.1_469146_470514_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|119aa|up_7|NZ_CP018756.1_470859_471216_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|130aa|up_6|NZ_CP018756.1_471227_471617_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|210aa|up_5|NZ_CP018756.1_471632_472262_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|333aa|up_4|NZ_CP018756.1_472318_473317_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|128aa|up_3|NZ_CP018756.1_473506_473890_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|169aa|up_2|NZ_CP018756.1_474087_474594_+	PRK04388, PRK04388, disulfide bond formation protein B; Provisional	NA|711aa|up_1|NZ_CP018756.1_474689_476822_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|464aa|up_0|NZ_CP018756.1_477043_478435_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|396aa|down_0|NZ_CP018756.1_479130_480318_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|541aa|down_1|NZ_CP018756.1_480388_482011_-	PRK08137, PRK08137, amidase; Provisional	NA|156aa|down_2|NZ_CP018756.1_482052_482520_-	COG3305, COG3305, Predicted membrane protein [Function unknown]	NA|616aa|down_3|NZ_CP018756.1_482529_484377_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|164aa|down_4|NZ_CP018756.1_484626_485118_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|329aa|down_5|NZ_CP018756.1_485235_486222_+	PRK05442, PRK05442, malate dehydrogenase; Provisional	NA|205aa|down_6|NZ_CP018756.1_486391_487006_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|627aa|down_7|NZ_CP018756.1_487700_489581_+	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|168aa|down_8|NZ_CP018756.1_489807_490311_+	NA	NA|352aa|down_9|NZ_CP018756.1_490361_491417_+	pfam05076, SUFU, Suppressor of fused protein (SUFU)
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	3	746279-746400	3	CRISPRCasFinder	no	csa3	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Type I-A	CCGCACTTGCCTTCGCCGCACTGGCCTTC	29	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|135aa|up_3|NZ_CP018756.1_743312_743717_+,NA|153aa|down_7|NZ_CP018756.1_753563_754022_+,NA|109aa|down_8|NZ_CP018756.1_754053_754380_+	NA|464aa|up_9|NZ_CP018756.1_737717_739109_-	pfam11066, DUF2867, Protein of unknown function (DUF2867)	csa3|104aa|up_8|NZ_CP018756.1_739123_739435_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|156aa|up_7|NZ_CP018756.1_739681_740149_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|up_6|NZ_CP018756.1_740162_740387_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|513aa|up_5|NZ_CP018756.1_740429_741968_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|386aa|up_4|NZ_CP018756.1_742083_743241_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|135aa|up_3|NZ_CP018756.1_743312_743717_+	NA	NA|213aa|up_2|NZ_CP018756.1_743755_744394_-	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA|261aa|up_1|NZ_CP018756.1_744396_745179_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|282aa|up_0|NZ_CP018756.1_745171_746017_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|215aa|down_0|NZ_CP018756.1_746640_747285_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|265aa|down_1|NZ_CP018756.1_747667_748462_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|182aa|down_2|NZ_CP018756.1_748465_749011_+	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|247aa|down_3|NZ_CP018756.1_749071_749812_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|438aa|down_4|NZ_CP018756.1_749808_751122_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|420aa|down_5|NZ_CP018756.1_751197_752457_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|316aa|down_6|NZ_CP018756.1_752461_753409_-	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|153aa|down_7|NZ_CP018756.1_753563_754022_+	NA	NA|109aa|down_8|NZ_CP018756.1_754053_754380_+	NA	NA|240aa|down_9|NZ_CP018756.1_754453_755173_-	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	4	1355480-1355575	4	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GGTGCCGAGCGTTGCTCGGCACGC	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|216aa|up_3|NZ_CP018756.1_1351791_1352439_+,NA|195aa|up_2|NZ_CP018756.1_1352458_1353043_-,NA|76aa|down_3|NZ_CP018756.1_1358783_1359011_+	NA|160aa|up_9|NZ_CP018756.1_1344715_1345195_+	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|211aa|up_8|NZ_CP018756.1_1345249_1345882_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|853aa|up_7|NZ_CP018756.1_1346036_1348595_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|374aa|up_6|NZ_CP018756.1_1348594_1349716_+	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|455aa|up_5|NZ_CP018756.1_1349712_1351077_+	pfam16656, Pur_ac_phosph_N, Purple acid Phosphatase, N-terminal domain	NA|209aa|up_4|NZ_CP018756.1_1351088_1351715_+	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|216aa|up_3|NZ_CP018756.1_1351791_1352439_+	NA	NA|195aa|up_2|NZ_CP018756.1_1352458_1353043_-	NA	NA|472aa|up_1|NZ_CP018756.1_1353152_1354568_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|232aa|up_0|NZ_CP018756.1_1354706_1355402_+	PRK10510, PRK10510, OmpA family lipoprotein	NA|242aa|down_0|NZ_CP018756.1_1355839_1356565_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|295aa|down_1|NZ_CP018756.1_1356682_1357567_+	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|343aa|down_2|NZ_CP018756.1_1357608_1358637_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|76aa|down_3|NZ_CP018756.1_1358783_1359011_+	NA	NA|257aa|down_4|NZ_CP018756.1_1359007_1359778_+	PRK09072, PRK09072, SDR family oxidoreductase	NA|408aa|down_5|NZ_CP018756.1_1359869_1361093_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1057aa|down_6|NZ_CP018756.1_1361220_1364391_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|246aa|down_7|NZ_CP018756.1_1364454_1365192_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|474aa|down_8|NZ_CP018756.1_1365185_1366607_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|286aa|down_9|NZ_CP018756.1_1366674_1367532_-	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	5	1445077-1445220	5	CRISPRCasFinder	no	cas3	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Unclear	GGTAGAGTCGACCGTTGGTCGGC	23	0	0	NA	NA	NA	2	2	Unclear	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|91aa|up_1|NZ_CP018756.1_1442685_1442958_-,NA	NA|188aa|up_9|NZ_CP018756.1_1433548_1434112_+	cd03463, 3,4-PCD_alpha, Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit	NA|448aa|up_8|NZ_CP018756.1_1434202_1435546_+	PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional	NA|262aa|up_7|NZ_CP018756.1_1435569_1436355_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|129aa|up_6|NZ_CP018756.1_1436377_1436764_+	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase	NA|285aa|up_5|NZ_CP018756.1_1436844_1437699_-	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|808aa|up_4|NZ_CP018756.1_1437800_1440224_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|180aa|up_3|NZ_CP018756.1_1440522_1441062_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	cas3|459aa|up_2|NZ_CP018756.1_1441151_1442528_-	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|91aa|up_1|NZ_CP018756.1_1442685_1442958_-	NA	NA|360aa|up_0|NZ_CP018756.1_1443020_1444100_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|628aa|down_0|NZ_CP018756.1_1445269_1447153_+	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed	NA|154aa|down_1|NZ_CP018756.1_1447308_1447770_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|130aa|down_2|NZ_CP018756.1_1447779_1448169_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|386aa|down_3|NZ_CP018756.1_1448375_1449533_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1175aa|down_4|NZ_CP018756.1_1449529_1453054_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1025aa|down_5|NZ_CP018756.1_1453050_1456125_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|411aa|down_6|NZ_CP018756.1_1456408_1457641_-	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]	NA|177aa|down_7|NZ_CP018756.1_1457633_1458164_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|296aa|down_8|NZ_CP018756.1_1458178_1459066_-	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|346aa|down_9|NZ_CP018756.1_1459226_1460264_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	6	1447167-1447255	6	CRISPRCasFinder	no	cas3	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Unclear	GTGCGGACCAACGGTCCGCACCTACC	26	0	0	NA	NA	NA	1	1	Unclear	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|91aa|up_3|NZ_CP018756.1_1442685_1442958_-,NA|110aa|down_9|NZ_CP018756.1_1460303_1460633_-	NA|262aa|up_9|NZ_CP018756.1_1435569_1436355_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|129aa|up_8|NZ_CP018756.1_1436377_1436764_+	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase	NA|285aa|up_7|NZ_CP018756.1_1436844_1437699_-	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|808aa|up_6|NZ_CP018756.1_1437800_1440224_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|180aa|up_5|NZ_CP018756.1_1440522_1441062_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	cas3|459aa|up_4|NZ_CP018756.1_1441151_1442528_-	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|91aa|up_3|NZ_CP018756.1_1442685_1442958_-	NA	NA|360aa|up_2|NZ_CP018756.1_1443020_1444100_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|293aa|up_1|NZ_CP018756.1_1444202_1445081_+	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional	NA|628aa|up_0|NZ_CP018756.1_1445269_1447153_+	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed	NA|154aa|down_0|NZ_CP018756.1_1447308_1447770_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|130aa|down_1|NZ_CP018756.1_1447779_1448169_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|386aa|down_2|NZ_CP018756.1_1448375_1449533_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1175aa|down_3|NZ_CP018756.1_1449529_1453054_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1025aa|down_4|NZ_CP018756.1_1453050_1456125_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|411aa|down_5|NZ_CP018756.1_1456408_1457641_-	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]	NA|177aa|down_6|NZ_CP018756.1_1457633_1458164_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|296aa|down_7|NZ_CP018756.1_1458178_1459066_-	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|346aa|down_8|NZ_CP018756.1_1459226_1460264_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|110aa|down_9|NZ_CP018756.1_1460303_1460633_-	NA
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	7	1456154-1456241	7	CRISPRCasFinder	no	cas3	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Unclear	ACAACGTGTTGTGGTGGGGGGAGA	24	0	0	NA	NA	NA	1	1	Unclear	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|91aa|up_8|NZ_CP018756.1_1442685_1442958_-,NA|110aa|down_4|NZ_CP018756.1_1460303_1460633_-	cas3|459aa|up_9|NZ_CP018756.1_1441151_1442528_-	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|91aa|up_8|NZ_CP018756.1_1442685_1442958_-	NA	NA|360aa|up_7|NZ_CP018756.1_1443020_1444100_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|293aa|up_6|NZ_CP018756.1_1444202_1445081_+	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional	NA|628aa|up_5|NZ_CP018756.1_1445269_1447153_+	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed	NA|154aa|up_4|NZ_CP018756.1_1447308_1447770_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|130aa|up_3|NZ_CP018756.1_1447779_1448169_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|386aa|up_2|NZ_CP018756.1_1448375_1449533_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1175aa|up_1|NZ_CP018756.1_1449529_1453054_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1025aa|up_0|NZ_CP018756.1_1453050_1456125_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|411aa|down_0|NZ_CP018756.1_1456408_1457641_-	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]	NA|177aa|down_1|NZ_CP018756.1_1457633_1458164_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|296aa|down_2|NZ_CP018756.1_1458178_1459066_-	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|346aa|down_3|NZ_CP018756.1_1459226_1460264_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|110aa|down_4|NZ_CP018756.1_1460303_1460633_-	NA	NA|42aa|down_5|NZ_CP018756.1_1460782_1460908_-	PRK00831, rpmJ, 50S ribosomal protein L36; Validated	NA|226aa|down_6|NZ_CP018756.1_1461105_1461783_+	PRK00023, cmk, (d)CMP kinase	NA|562aa|down_7|NZ_CP018756.1_1461995_1463681_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|102aa|down_8|NZ_CP018756.1_1463771_1464077_+	PRK00199, ihfB, integration host factor subunit beta; Reviewed	NA|95aa|down_9|NZ_CP018756.1_1464154_1464439_+	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	8	1485634-1485711	8	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GACCAACGGTCCGCACCTACCAAA	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|1145aa|down_2|NZ_CP018756.1_1489831_1493266_+,NA|104aa|down_5|NZ_CP018756.1_1495869_1496181_+,NA|119aa|down_7|NZ_CP018756.1_1497177_1497534_-,NA|100aa|down_9|NZ_CP018756.1_1499557_1499857_-	NA|142aa|up_9|NZ_CP018756.1_1474590_1475016_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|402aa|up_8|NZ_CP018756.1_1475026_1476232_+	PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional	NA|268aa|up_7|NZ_CP018756.1_1476218_1477022_+	COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|288aa|up_6|NZ_CP018756.1_1477041_1477905_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|213aa|up_5|NZ_CP018756.1_1477969_1478608_+	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|up_4|NZ_CP018756.1_1478607_1479816_+	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|466aa|up_3|NZ_CP018756.1_1479831_1481229_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|379aa|up_2|NZ_CP018756.1_1481413_1482550_+	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB	NA|612aa|up_1|NZ_CP018756.1_1482716_1484552_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|293aa|up_0|NZ_CP018756.1_1484711_1485590_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|486aa|down_0|NZ_CP018756.1_1485931_1487389_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|522aa|down_1|NZ_CP018756.1_1487498_1489064_+	PRK00074, guaA, GMP synthase; Reviewed	NA|1145aa|down_2|NZ_CP018756.1_1489831_1493266_+	NA	NA|301aa|down_3|NZ_CP018756.1_1493720_1494623_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|280aa|down_4|NZ_CP018756.1_1494717_1495557_+	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|104aa|down_5|NZ_CP018756.1_1495869_1496181_+	NA	NA|261aa|down_6|NZ_CP018756.1_1496257_1497040_+	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs	NA|119aa|down_7|NZ_CP018756.1_1497177_1497534_-	NA	NA|359aa|down_8|NZ_CP018756.1_1498195_1499272_-	pfam14082, DUF4263, Domain of unknown function (DUF4263)	NA|100aa|down_9|NZ_CP018756.1_1499557_1499857_-	NA
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	9	1497059-1497174	9	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	TTTGATTTCCCGCCGGGCATGGCCCGGCG	29	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|1145aa|up_4|NZ_CP018756.1_1489831_1493266_+,NA|104aa|up_1|NZ_CP018756.1_1495869_1496181_+,NA|119aa|down_0|NZ_CP018756.1_1497177_1497534_-,NA|100aa|down_2|NZ_CP018756.1_1499557_1499857_-	NA|379aa|up_9|NZ_CP018756.1_1481413_1482550_+	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB	NA|612aa|up_8|NZ_CP018756.1_1482716_1484552_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|293aa|up_7|NZ_CP018756.1_1484711_1485590_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|486aa|up_6|NZ_CP018756.1_1485931_1487389_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|522aa|up_5|NZ_CP018756.1_1487498_1489064_+	PRK00074, guaA, GMP synthase; Reviewed	NA|1145aa|up_4|NZ_CP018756.1_1489831_1493266_+	NA	NA|301aa|up_3|NZ_CP018756.1_1493720_1494623_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|280aa|up_2|NZ_CP018756.1_1494717_1495557_+	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|104aa|up_1|NZ_CP018756.1_1495869_1496181_+	NA	NA|261aa|up_0|NZ_CP018756.1_1496257_1497040_+	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs	NA|119aa|down_0|NZ_CP018756.1_1497177_1497534_-	NA	NA|359aa|down_1|NZ_CP018756.1_1498195_1499272_-	pfam14082, DUF4263, Domain of unknown function (DUF4263)	NA|100aa|down_2|NZ_CP018756.1_1499557_1499857_-	NA	NA|296aa|down_3|NZ_CP018756.1_1500125_1501013_-	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|248aa|down_4|NZ_CP018756.1_1501145_1501889_+	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|134aa|down_5|NZ_CP018756.1_1501910_1502312_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|116aa|down_6|NZ_CP018756.1_1502317_1502665_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|126aa|down_7|NZ_CP018756.1_1502701_1503079_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|149aa|down_8|NZ_CP018756.1_1503353_1503800_-	pfam01584, CheW, CheW-like domain	NA|580aa|down_9|NZ_CP018756.1_1503913_1505653_-	cd01948, EAL, EAL domain
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	10	1780596-1780705	10	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GCCACGACCCGCGATCATCCACGCA	25	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|113aa|up_4|NZ_CP018756.1_1772034_1772373_+,NA|164aa|down_0|NZ_CP018756.1_1780782_1781274_-,NA|116aa|down_1|NZ_CP018756.1_1781411_1781759_-,NA|72aa|down_2|NZ_CP018756.1_1781856_1782072_-,NA|163aa|down_7|NZ_CP018756.1_1785747_1786236_-	NA|136aa|up_9|NZ_CP018756.1_1768826_1769234_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NZ_CP018756.1_1769237_1769633_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NZ_CP018756.1_1769770_1770715_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|219aa|up_6|NZ_CP018756.1_1771000_1771657_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NZ_CP018756.1_1771732_1772038_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NZ_CP018756.1_1772034_1772373_+	NA	NA|406aa|up_3|NZ_CP018756.1_1772465_1773683_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|592aa|up_2|NZ_CP018756.1_1773777_1775553_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NZ_CP018756.1_1775556_1777659_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|913aa|up_0|NZ_CP018756.1_1777790_1780529_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|164aa|down_0|NZ_CP018756.1_1780782_1781274_-	NA	NA|116aa|down_1|NZ_CP018756.1_1781411_1781759_-	NA	NA|72aa|down_2|NZ_CP018756.1_1781856_1782072_-	NA	NA|397aa|down_3|NZ_CP018756.1_1782170_1783361_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_4|NZ_CP018756.1_1783534_1784149_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_5|NZ_CP018756.1_1784145_1785288_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_6|NZ_CP018756.1_1785284_1785746_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|163aa|down_7|NZ_CP018756.1_1785747_1786236_-	NA	NA|109aa|down_8|NZ_CP018756.1_1786346_1786673_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|761aa|down_9|NZ_CP018756.1_1787009_1789292_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	11	1917247-1917376	11	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GGCCCTACGGCCCACCAAGGTGGGCATCTACCAAGGCGGTT	41	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|132aa|up_7|NZ_CP018756.1_1910243_1910639_+,NA|150aa|up_4|NZ_CP018756.1_1913713_1914163_-,NA|146aa|up_2|NZ_CP018756.1_1915263_1915701_-,NA|65aa|down_1|NZ_CP018756.1_1917943_1918138_+,NA|105aa|down_2|NZ_CP018756.1_1918154_1918469_-	NA|202aa|up_9|NZ_CP018756.1_1908749_1909355_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|228aa|up_8|NZ_CP018756.1_1909455_1910139_+	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|132aa|up_7|NZ_CP018756.1_1910243_1910639_+	NA	NA|733aa|up_6|NZ_CP018756.1_1910657_1912856_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|219aa|up_5|NZ_CP018756.1_1913060_1913717_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|150aa|up_4|NZ_CP018756.1_1913713_1914163_-	NA	NA|309aa|up_3|NZ_CP018756.1_1914323_1915250_+	pfam01590, GAF, GAF domain	NA|146aa|up_2|NZ_CP018756.1_1915263_1915701_-	NA	NA|184aa|up_1|NZ_CP018756.1_1915733_1916285_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|220aa|up_0|NZ_CP018756.1_1916484_1917144_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|134aa|down_0|NZ_CP018756.1_1917512_1917914_+	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators	NA|65aa|down_1|NZ_CP018756.1_1917943_1918138_+	NA	NA|105aa|down_2|NZ_CP018756.1_1918154_1918469_-	NA	NA|388aa|down_3|NZ_CP018756.1_1918475_1919639_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|159aa|down_4|NZ_CP018756.1_1919738_1920215_-	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|286aa|down_5|NZ_CP018756.1_1920293_1921151_-	PRK10545, PRK10545, excinuclease Cho	NA|230aa|down_6|NZ_CP018756.1_1921270_1921960_-	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|196aa|down_7|NZ_CP018756.1_1921956_1922544_-	pfam05401, NodS, Nodulation protein S (NodS)	NA|251aa|down_8|NZ_CP018756.1_1922540_1923293_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|313aa|down_9|NZ_CP018756.1_1923280_1924219_-	cd00567, ACAD, Acyl-CoA dehydrogenase
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	12	2176933-2177065	12	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	AGATGTGTCGACCAACGGTCGACACCTACCAACAGCC	37	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|111aa|up_7|NZ_CP018756.1_2166148_2166481_-,NA|214aa|down_1|NZ_CP018756.1_2178615_2179257_+,NA|215aa|down_2|NZ_CP018756.1_2179294_2179939_-,NA|187aa|down_9|NZ_CP018756.1_2187608_2188169_-	NA|219aa|up_9|NZ_CP018756.1_2164982_2165639_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|145aa|up_8|NZ_CP018756.1_2165635_2166070_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|111aa|up_7|NZ_CP018756.1_2166148_2166481_-	NA	NA|1009aa|up_6|NZ_CP018756.1_2166580_2169607_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|up_5|NZ_CP018756.1_2169599_2170253_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|398aa|up_4|NZ_CP018756.1_2171249_2172443_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|310aa|up_3|NZ_CP018756.1_2172537_2173467_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|486aa|up_2|NZ_CP018756.1_2173479_2174937_-	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|233aa|up_1|NZ_CP018756.1_2174990_2175689_-	COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]	NA|294aa|up_0|NZ_CP018756.1_2175782_2176664_+	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|387aa|down_0|NZ_CP018756.1_2177269_2178430_-	PRK05985, PRK05985, cytosine deaminase; Provisional	NA|214aa|down_1|NZ_CP018756.1_2178615_2179257_+	NA	NA|215aa|down_2|NZ_CP018756.1_2179294_2179939_-	NA	NA|204aa|down_3|NZ_CP018756.1_2180182_2180794_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|262aa|down_4|NZ_CP018756.1_2180790_2181576_-	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional	NA|565aa|down_5|NZ_CP018756.1_2181615_2183310_-	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235)	NA|166aa|down_6|NZ_CP018756.1_2183296_2183794_-	pfam11745, DUF3304, Protein of unknown function (DUF3304)	NA|288aa|down_7|NZ_CP018756.1_2183813_2184677_-	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|927aa|down_8|NZ_CP018756.1_2184673_2187454_-	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|down_9|NZ_CP018756.1_2187608_2188169_-	NA
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	13	2394201-2394303	13	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GGCCGGGTGGTGCCCGGCCGTGCG	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|156aa|up_2|NZ_CP018756.1_2392454_2392922_-,NA|140aa|up_0|NZ_CP018756.1_2393737_2394157_-,NA|109aa|down_2|NZ_CP018756.1_2397214_2397541_-,NA|110aa|down_4|NZ_CP018756.1_2400336_2400666_-,NA|205aa|down_5|NZ_CP018756.1_2400943_2401558_-,NA|259aa|down_6|NZ_CP018756.1_2401651_2402428_+	NA|703aa|up_9|NZ_CP018756.1_2385756_2387865_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|261aa|up_8|NZ_CP018756.1_2387918_2388701_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|127aa|up_7|NZ_CP018756.1_2388697_2389078_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|194aa|up_6|NZ_CP018756.1_2389122_2389704_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|182aa|up_5|NZ_CP018756.1_2389773_2390319_+	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|374aa|up_4|NZ_CP018756.1_2390331_2391453_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|289aa|up_3|NZ_CP018756.1_2391578_2392445_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|156aa|up_2|NZ_CP018756.1_2392454_2392922_-	NA	NA|268aa|up_1|NZ_CP018756.1_2392937_2393741_-	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|140aa|up_0|NZ_CP018756.1_2393737_2394157_-	NA	NA|796aa|down_0|NZ_CP018756.1_2394329_2396717_-	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|114aa|down_1|NZ_CP018756.1_2396854_2397196_-	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|109aa|down_2|NZ_CP018756.1_2397214_2397541_-	NA	NA|821aa|down_3|NZ_CP018756.1_2397740_2400203_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|110aa|down_4|NZ_CP018756.1_2400336_2400666_-	NA	NA|205aa|down_5|NZ_CP018756.1_2400943_2401558_-	NA	NA|259aa|down_6|NZ_CP018756.1_2401651_2402428_+	NA	NA|131aa|down_7|NZ_CP018756.1_2402405_2402798_+	pfam11236, DUF3037, Protein of unknown function (DUF3037)	NA|392aa|down_8|NZ_CP018756.1_2402810_2403986_-	sd00045, ANK, ankyrin repeats	NA|471aa|down_9|NZ_CP018756.1_2404067_2405480_-	pfam00144, Beta-lactamase, Beta-lactamase
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	14	2463278-2463443	14	CRISPRCasFinder	no	csa3	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Type I-A	CAACGGCCTGGACCTGGCCCTGCTG	25	0	0	NA	NA	NA	2	2	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|142aa|down_2|NZ_CP018756.1_2465827_2466253_+	NA|365aa|up_9|NZ_CP018756.1_2452264_2453359_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|895aa|up_8|NZ_CP018756.1_2453355_2456040_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|396aa|up_7|NZ_CP018756.1_2456088_2457276_+	pfam12832, MFS_1_like, MFS_1 like family	NA|229aa|up_6|NZ_CP018756.1_2457324_2458011_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|80aa|up_5|NZ_CP018756.1_2458021_2458261_-	PRK00846, PRK00846, hypothetical protein; Provisional	NA|450aa|up_4|NZ_CP018756.1_2458253_2459603_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|326aa|up_3|NZ_CP018756.1_2459625_2460603_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|162aa|up_2|NZ_CP018756.1_2460699_2461185_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|120aa|up_1|NZ_CP018756.1_2461906_2462266_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|292aa|up_0|NZ_CP018756.1_2462265_2463141_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|296aa|down_0|NZ_CP018756.1_2464184_2465072_+	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|206aa|down_1|NZ_CP018756.1_2465103_2465721_+	pfam11101, DUF2884, Protein of unknown function (DUF2884)	NA|142aa|down_2|NZ_CP018756.1_2465827_2466253_+	NA	NA|480aa|down_3|NZ_CP018756.1_2466310_2467750_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|456aa|down_4|NZ_CP018756.1_2467982_2469350_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|472aa|down_5|NZ_CP018756.1_2470008_2471424_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|301aa|down_6|NZ_CP018756.1_2471427_2472330_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|944aa|down_7|NZ_CP018756.1_2472516_2475348_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|401aa|down_8|NZ_CP018756.1_2475388_2476591_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|479aa|down_9|NZ_CP018756.1_2476654_2478091_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	15	2532868-2532954	15	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	AGGTTGGCACCTACCAGAGCGCCGTTG	27	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA	NA|204aa|up_9|NZ_CP018756.1_2521971_2522583_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|154aa|up_8|NZ_CP018756.1_2522805_2523267_+	cd00607, RNase_Sa, RNase_Sa	NA|138aa|up_7|NZ_CP018756.1_2523263_2523677_+	cd05141, Barstar_evA4336-like, Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp	NA|588aa|up_6|NZ_CP018756.1_2523738_2525502_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|200aa|up_5|NZ_CP018756.1_2525512_2526112_-	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	NA|117aa|up_4|NZ_CP018756.1_2526202_2526553_+	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|139aa|up_3|NZ_CP018756.1_2526549_2526966_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|270aa|up_2|NZ_CP018756.1_2527063_2527873_+	PRK04201, PRK04201, zinc transporter ZupT; Provisional	NA|325aa|up_1|NZ_CP018756.1_2527971_2528946_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|1100aa|up_0|NZ_CP018756.1_2529353_2532653_+	PRK10811, rne, ribonuclease E; Reviewed	NA|297aa|down_0|NZ_CP018756.1_2533095_2533986_-	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	NA|1056aa|down_1|NZ_CP018756.1_2533988_2537156_-	pfam00754, F5_F8_type_C, F5/8 type C domain	NA|279aa|down_2|NZ_CP018756.1_2537152_2537989_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_3|NZ_CP018756.1_2537985_2538867_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|447aa|down_4|NZ_CP018756.1_2538863_2540204_-	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold	NA|535aa|down_5|NZ_CP018756.1_2540208_2541813_-	COG5368, COG5368, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1020aa|down_6|NZ_CP018756.1_2542061_2545121_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|346aa|down_7|NZ_CP018756.1_2545197_2546235_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|92aa|down_8|NZ_CP018756.1_2546383_2546659_-	pfam01722, BolA, BolA-like protein	NA|100aa|down_9|NZ_CP018756.1_2546655_2546955_-	PRK11370, PRK11370, YciI family protein
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	16	2550338-2550472	1	PILER-CR	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GGAGGCGCCGGTGGTGGCCAGGGTCGTCCG	30	0	0	NA	NA	NA	2	2	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|145aa|down_0|NZ_CP018756.1_2550889_2551324_-	NA|279aa|up_9|NZ_CP018756.1_2537152_2537989_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|up_8|NZ_CP018756.1_2537985_2538867_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|447aa|up_7|NZ_CP018756.1_2538863_2540204_-	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold	NA|535aa|up_6|NZ_CP018756.1_2540208_2541813_-	COG5368, COG5368, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1020aa|up_5|NZ_CP018756.1_2542061_2545121_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|346aa|up_4|NZ_CP018756.1_2545197_2546235_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|92aa|up_3|NZ_CP018756.1_2546383_2546659_-	pfam01722, BolA, BolA-like protein	NA|100aa|up_2|NZ_CP018756.1_2546655_2546955_-	PRK11370, PRK11370, YciI family protein	NA|302aa|up_1|NZ_CP018756.1_2547326_2548232_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|293aa|up_0|NZ_CP018756.1_2548245_2549124_+	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair]	NA|145aa|down_0|NZ_CP018756.1_2550889_2551324_-	NA	NA|269aa|down_1|NZ_CP018756.1_2551441_2552248_-	cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)	NA|383aa|down_2|NZ_CP018756.1_2552261_2553410_-	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|221aa|down_3|NZ_CP018756.1_2553596_2554259_+	PRK13543, PRK13543, heme ABC exporter ATP-binding protein CcmA	NA|232aa|down_4|NZ_CP018756.1_2554255_2554951_+	COG2386, CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]	NA|251aa|down_5|NZ_CP018756.1_2554994_2555747_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|63aa|down_6|NZ_CP018756.1_2555743_2555932_+	pfam04995, CcmD, Heme exporter protein D (CcmD)	NA|154aa|down_7|NZ_CP018756.1_2555928_2556390_+	PRK13254, PRK13254, cytochrome c maturation protein CcmE	NA|640aa|down_8|NZ_CP018756.1_2556390_2558310_+	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|206aa|down_9|NZ_CP018756.1_2558318_2558936_+	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	17	2626197-2626327	16	CRISPRCasFinder	no	Cas9_archaeal	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	 or Type II-C?, Type II-B,Type II-A	TGGTGGGTGCCGACCGTTGGTCGGCACATCTGTCAGATATC	41	1	6	2626238-2626286|2626238-2626286|2626238-2626286|2626238-2626286|2626238-2626286|2626238-2626286	NZ_CP018756.1_1338749-1338797|NZ_CP018756.1_2785397-2785445|NZ_CP018756.1_2785583-2785631|NZ_CP018756.1_2896922-2896874|NZ_CP018756.1_268702-268750|NZ_CP018756.1_2306968-2307016	NA	1	1	TypeII-A,TypeII-B,orTypeII-C?	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|378aa|down_3|NZ_CP018756.1_2631191_2632325_-,NA|297aa|down_7|NZ_CP018756.1_2638235_2639126_+,NA|59aa|down_8|NZ_CP018756.1_2639153_2639330_-,NA|254aa|down_9|NZ_CP018756.1_2639440_2640202_-	NA|247aa|up_9|NZ_CP018756.1_2614286_2615027_+	TIGR01829, Acetoacetyl-CoA_reductase, acetoacetyl-CoA reductase	NA|178aa|up_8|NZ_CP018756.1_2615211_2615745_+	TIGR01848, Uncharacterized_protein_Alvin_0064, polyhydroxyalkanoate synthesis repressor PhaR	NA|315aa|up_7|NZ_CP018756.1_2615941_2616886_-	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues	NA|310aa|up_6|NZ_CP018756.1_2616888_2617818_-	COG3358, COG3358, Uncharacterized conserved protein [Function unknown]	NA|636aa|up_5|NZ_CP018756.1_2617843_2619751_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|523aa|up_4|NZ_CP018756.1_2619891_2621460_-	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|161aa|up_3|NZ_CP018756.1_2621541_2622024_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|495aa|up_2|NZ_CP018756.1_2622020_2623505_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|357aa|up_1|NZ_CP018756.1_2623528_2624599_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|444aa|up_0|NZ_CP018756.1_2624644_2625976_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|299aa|down_0|NZ_CP018756.1_2626600_2627497_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|624aa|down_1|NZ_CP018756.1_2627586_2629458_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|360aa|down_2|NZ_CP018756.1_2629542_2630622_+	TIGR01388, Ribonuclease_D, ribonuclease D	NA|378aa|down_3|NZ_CP018756.1_2631191_2632325_-	NA	NA|776aa|down_4|NZ_CP018756.1_2632452_2634780_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|853aa|down_5|NZ_CP018756.1_2634968_2637527_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|102aa|down_6|NZ_CP018756.1_2637648_2637954_-	pfam07073, ROF, Modulator of Rho-dependent transcription termination (ROF)	NA|297aa|down_7|NZ_CP018756.1_2638235_2639126_+	NA	NA|59aa|down_8|NZ_CP018756.1_2639153_2639330_-	NA	NA|254aa|down_9|NZ_CP018756.1_2639440_2640202_-	NA
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	18	2756760-2756851	17	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	ACGTGACGCATGCCTCCCGTGCCC	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|56aa|up_6|NZ_CP018756.1_2744011_2744179_+,NA	NA|454aa|up_9|NZ_CP018756.1_2741338_2742700_-	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|224aa|up_8|NZ_CP018756.1_2742905_2743577_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|141aa|up_7|NZ_CP018756.1_2743573_2743996_+	pfam01230, HIT, HIT domain	NA|56aa|up_6|NZ_CP018756.1_2744011_2744179_+	NA	NA|191aa|up_5|NZ_CP018756.1_2744249_2744822_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|285aa|up_4|NZ_CP018756.1_2744900_2745755_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|674aa|up_3|NZ_CP018756.1_2745941_2747963_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|960aa|up_2|NZ_CP018756.1_2748152_2751032_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|991aa|up_1|NZ_CP018756.1_2751408_2754381_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|702aa|up_0|NZ_CP018756.1_2754570_2756676_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|669aa|down_0|NZ_CP018756.1_2756905_2758912_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|1013aa|down_1|NZ_CP018756.1_2759039_2762078_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|552aa|down_2|NZ_CP018756.1_2762815_2764471_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|161aa|down_3|NZ_CP018756.1_2764605_2765088_+	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|529aa|down_4|NZ_CP018756.1_2765084_2766671_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|225aa|down_5|NZ_CP018756.1_2766786_2767461_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|103aa|down_6|NZ_CP018756.1_2767554_2767863_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|307aa|down_7|NZ_CP018756.1_2767889_2768810_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|453aa|down_8|NZ_CP018756.1_2768973_2770332_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|415aa|down_9|NZ_CP018756.1_2770450_2771695_-	COG2311, COG2311, Predicted membrane protein [Function unknown]
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	19	2766674-2766757	18	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GCGTGCCGACCAACGGTCGGCACC	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA	NA|285aa|up_9|NZ_CP018756.1_2744900_2745755_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|674aa|up_8|NZ_CP018756.1_2745941_2747963_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|960aa|up_7|NZ_CP018756.1_2748152_2751032_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|991aa|up_6|NZ_CP018756.1_2751408_2754381_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|702aa|up_5|NZ_CP018756.1_2754570_2756676_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|669aa|up_4|NZ_CP018756.1_2756905_2758912_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|1013aa|up_3|NZ_CP018756.1_2759039_2762078_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|552aa|up_2|NZ_CP018756.1_2762815_2764471_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|161aa|up_1|NZ_CP018756.1_2764605_2765088_+	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|529aa|up_0|NZ_CP018756.1_2765084_2766671_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|225aa|down_0|NZ_CP018756.1_2766786_2767461_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|103aa|down_1|NZ_CP018756.1_2767554_2767863_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|307aa|down_2|NZ_CP018756.1_2767889_2768810_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|453aa|down_3|NZ_CP018756.1_2768973_2770332_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|415aa|down_4|NZ_CP018756.1_2770450_2771695_-	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|161aa|down_5|NZ_CP018756.1_2771794_2772277_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|180aa|down_6|NZ_CP018756.1_2772388_2772928_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|257aa|down_7|NZ_CP018756.1_2773059_2773830_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|451aa|down_8|NZ_CP018756.1_2774072_2775425_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|432aa|down_9|NZ_CP018756.1_2775543_2776839_-	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	20	2821441-2821546	19	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	CCCCGTGCCGACCAACGGTCGGCACCCACCACCAGCCGC	39	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|200aa|up_9|NZ_CP018756.1_2810536_2811136_-,NA|119aa|down_4|NZ_CP018756.1_2825810_2826167_+	NA|200aa|up_9|NZ_CP018756.1_2810536_2811136_-	NA	NA|287aa|up_8|NZ_CP018756.1_2811299_2812160_+	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|567aa|up_7|NZ_CP018756.1_2812267_2813968_+	COG4254, COG4254, Uncharacterized protein conserved in bacteria [Function unknown]	NA|542aa|up_6|NZ_CP018756.1_2813964_2815590_+	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|154aa|up_5|NZ_CP018756.1_2815702_2816164_+	pfam14539, DUF4442, Domain of unknown function (DUF4442)	NA|426aa|up_4|NZ_CP018756.1_2816165_2817443_-	cd14233, GAT_TOM1_like, GAT domain found in target of myb protein 1 (Tom1) protein family	NA|228aa|up_3|NZ_CP018756.1_2817518_2818202_+	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]	NA|266aa|up_2|NZ_CP018756.1_2818198_2818996_+	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|647aa|up_1|NZ_CP018756.1_2819090_2821031_+	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown]	NA|136aa|up_0|NZ_CP018756.1_2821027_2821435_+	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|150aa|down_0|NZ_CP018756.1_2821821_2822271_+	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147)	NA|694aa|down_1|NZ_CP018756.1_2822373_2824455_+	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|197aa|down_2|NZ_CP018756.1_2824530_2825121_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|138aa|down_3|NZ_CP018756.1_2825146_2825560_+	PRK08764, PRK08764, Rnf electron transport complex subunit RnfB	NA|119aa|down_4|NZ_CP018756.1_2825810_2826167_+	NA	NA|116aa|down_5|NZ_CP018756.1_2826224_2826572_-	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|855aa|down_6|NZ_CP018756.1_2826764_2829329_+	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|449aa|down_7|NZ_CP018756.1_2829430_2830777_-	COG3946, VirJ, Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]	NA|206aa|down_8|NZ_CP018756.1_2830855_2831473_-	pfam06197, DUF998, Protein of unknown function (DUF998)	NA|58aa|down_9|NZ_CP018756.1_2831469_2831643_-	pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	21	3062380-3062470	20	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	AGCGTGCGAACCAACGGTTCGCACC	25	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|123aa|up_2|NZ_CP018756.1_3060481_3060850_+,NA|106aa|up_1|NZ_CP018756.1_3060928_3061246_+,NA|162aa|up_0|NZ_CP018756.1_3061361_3061847_-,NA	NA|171aa|up_9|NZ_CP018756.1_3055043_3055556_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|102aa|up_8|NZ_CP018756.1_3055630_3055936_-	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|up_7|NZ_CP018756.1_3056168_3056591_+	pfam00072, Response_reg, Response regulator receiver domain	NA|118aa|up_6|NZ_CP018756.1_3057019_3057373_-	pfam11042, DUF2750, Protein of unknown function (DUF2750)	NA|143aa|up_5|NZ_CP018756.1_3057369_3057798_-	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|315aa|up_4|NZ_CP018756.1_3057817_3058762_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|284aa|up_3|NZ_CP018756.1_3058791_3059643_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|123aa|up_2|NZ_CP018756.1_3060481_3060850_+	NA	NA|106aa|up_1|NZ_CP018756.1_3060928_3061246_+	NA	NA|162aa|up_0|NZ_CP018756.1_3061361_3061847_-	NA	NA|222aa|down_0|NZ_CP018756.1_3062504_3063170_-	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|234aa|down_1|NZ_CP018756.1_3063248_3063950_-	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|273aa|down_2|NZ_CP018756.1_3064061_3064880_-	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]	NA|173aa|down_3|NZ_CP018756.1_3064883_3065402_-	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|440aa|down_4|NZ_CP018756.1_3065465_3066785_-	PRK04922, tolB, Tol-Pal system beta propeller repeat protein TolB	NA|354aa|down_5|NZ_CP018756.1_3066965_3068027_-	TIGR02794, Protein_TolA, TolA protein	NA|143aa|down_6|NZ_CP018756.1_3068016_3068445_-	TIGR02801, Protein_TolR, TolR protein	NA|260aa|down_7|NZ_CP018756.1_3068469_3069249_-	TIGR02796, Protein_TolQ, TolQ protein	NA|144aa|down_8|NZ_CP018756.1_3069259_3069691_-	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|347aa|down_9|NZ_CP018756.1_3069680_3070721_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	22	3177148-3177288	21	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	TCGATATCTGACAGATGTGCCGACCAACGGTCGGCACCCACCAACAGCC	49	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|329aa|up_5|NZ_CP018756.1_3168063_3169050_-,NA|346aa|down_3|NZ_CP018756.1_3180523_3181561_-	NA|241aa|up_9|NZ_CP018756.1_3163745_3164468_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|135aa|up_8|NZ_CP018756.1_3164521_3164926_+	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL	NA|474aa|up_7|NZ_CP018756.1_3165119_3166541_+	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase	NA|484aa|up_6|NZ_CP018756.1_3166601_3168053_-	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|329aa|up_5|NZ_CP018756.1_3168063_3169050_-	NA	NA|280aa|up_4|NZ_CP018756.1_3169227_3170067_-	PRK10864, PRK10864, putative methyltransferase; Provisional	NA|504aa|up_3|NZ_CP018756.1_3170067_3171579_-	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|178aa|up_2|NZ_CP018756.1_3171769_3172303_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|1042aa|up_1|NZ_CP018756.1_3172295_3175421_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|369aa|up_0|NZ_CP018756.1_3175417_3176524_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|328aa|down_0|NZ_CP018756.1_3177495_3178479_-	PRK12680, PRK12680, LysR family transcriptional regulator	NA|320aa|down_1|NZ_CP018756.1_3178688_3179648_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|199aa|down_2|NZ_CP018756.1_3179878_3180475_+	PRK00431, PRK00431, ADP-ribose-binding protein	NA|346aa|down_3|NZ_CP018756.1_3180523_3181561_-	NA	NA|335aa|down_4|NZ_CP018756.1_3181697_3182702_-	NF033379, FrucBisAld_I, fructose-bisphosphate aldolase class I	NA|489aa|down_5|NZ_CP018756.1_3182928_3184395_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|223aa|down_6|NZ_CP018756.1_3184609_3185278_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|392aa|down_7|NZ_CP018756.1_3185274_3186450_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|459aa|down_8|NZ_CP018756.1_3187058_3188435_-	pfam13163, DUF3999, Protein of unknown function (DUF3999)	NA|892aa|down_9|NZ_CP018756.1_3188431_3191107_-	pfam10101, DUF2339, Predicted membrane protein (DUF2339)
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	23	3252379-3252500	22	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GAGCCAGTAGATCCACGCCATGCGTGGAT	29	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|227aa|down_3|NZ_CP018756.1_3255512_3256193_+,NA|168aa|down_4|NZ_CP018756.1_3256597_3257101_-,NA|157aa|down_5|NZ_CP018756.1_3257226_3257697_-,NA|162aa|down_6|NZ_CP018756.1_3257999_3258485_-	NA|160aa|up_9|NZ_CP018756.1_3244049_3244529_+	COG2947, COG2947, Uncharacterized conserved protein [Function unknown]	NA|216aa|up_8|NZ_CP018756.1_3244551_3245199_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|148aa|up_7|NZ_CP018756.1_3245218_3245662_+	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|282aa|up_6|NZ_CP018756.1_3245814_3246660_+	COG2912, COG2912, Uncharacterized conserved protein [Function unknown]	NA|75aa|up_5|NZ_CP018756.1_3246700_3246925_-	COG1773, COG1773, Rubredoxin [Energy production and conversion]	NA|209aa|up_4|NZ_CP018756.1_3246959_3247586_+	PRK00043, thiE, thiamine phosphate synthase	NA|430aa|up_3|NZ_CP018756.1_3247602_3248892_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|150aa|up_2|NZ_CP018756.1_3248993_3249443_-	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase	NA|201aa|up_1|NZ_CP018756.1_3249565_3250168_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|409aa|up_0|NZ_CP018756.1_3250225_3251452_-	PRK04612, argD, acetylornithine transaminase	NA|317aa|down_0|NZ_CP018756.1_3252507_3253458_-	pfam12889, DUF3829, Protein of unknown function (DUF3829)	NA|345aa|down_1|NZ_CP018756.1_3253491_3254526_-	pfam12889, DUF3829, Protein of unknown function (DUF3829)	NA|281aa|down_2|NZ_CP018756.1_3254585_3255428_-	PRK08278, PRK08278, SDR family oxidoreductase	NA|227aa|down_3|NZ_CP018756.1_3255512_3256193_+	NA	NA|168aa|down_4|NZ_CP018756.1_3256597_3257101_-	NA	NA|157aa|down_5|NZ_CP018756.1_3257226_3257697_-	NA	NA|162aa|down_6|NZ_CP018756.1_3257999_3258485_-	NA	NA|169aa|down_7|NZ_CP018756.1_3258608_3259115_-	pfam11066, DUF2867, Protein of unknown function (DUF2867)	NA|221aa|down_8|NZ_CP018756.1_3259111_3259774_-	PRK12274, PRK12274, serine/threonine protein kinase; Provisional	NA|665aa|down_9|NZ_CP018756.1_3259859_3261854_+	cd03392, PAP2_like_2, PAP2_like_2 proteins
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	24	3734828-3734946	23	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	TGGTGGGTGCCGACCGTTGGTCGGCAC	27	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|1214aa|up_7|NZ_CP018756.1_3709836_3713478_-,NA|356aa|down_3|NZ_CP018756.1_3739628_3740696_-	NA|428aa|up_9|NZ_CP018756.1_3707265_3708549_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|292aa|up_8|NZ_CP018756.1_3708651_3709527_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|1214aa|up_7|NZ_CP018756.1_3709836_3713478_-	NA	NA|5016aa|up_6|NZ_CP018756.1_3713536_3728584_-	pfam17963, Big_9, Bacterial Ig domain	NA|719aa|up_5|NZ_CP018756.1_3728693_3730850_-	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|121aa|up_4|NZ_CP018756.1_3731164_3731527_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|238aa|up_3|NZ_CP018756.1_3731545_3732259_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|281aa|up_2|NZ_CP018756.1_3732269_3733112_-	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|316aa|up_1|NZ_CP018756.1_3733119_3734067_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|229aa|up_0|NZ_CP018756.1_3734070_3734757_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|576aa|down_0|NZ_CP018756.1_3734951_3736679_-	PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional	NA|110aa|down_1|NZ_CP018756.1_3737202_3737532_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|587aa|down_2|NZ_CP018756.1_3737759_3739520_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|356aa|down_3|NZ_CP018756.1_3739628_3740696_-	NA	NA|844aa|down_4|NZ_CP018756.1_3740835_3743367_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|336aa|down_5|NZ_CP018756.1_3743708_3744716_+	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|996aa|down_6|NZ_CP018756.1_3745205_3748193_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|339aa|down_7|NZ_CP018756.1_3748255_3749272_+	pfam13621, Cupin_8, Cupin-like domain	NA|525aa|down_8|NZ_CP018756.1_3749380_3750955_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|292aa|down_9|NZ_CP018756.1_3751006_3751882_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	25	3776451-3776550	24	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	CATGCGGACCAACGGTCCGCACCT	24	1	1	3776475-3776526	NZ_CP018756.1_3776513-3776564	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA,NA|147aa|down_5|NZ_CP018756.1_3780878_3781319_+	NA|741aa|up_9|NZ_CP018756.1_3757365_3759588_-	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|170aa|up_8|NZ_CP018756.1_3759936_3760446_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|98aa|up_7|NZ_CP018756.1_3760505_3760799_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|273aa|up_6|NZ_CP018756.1_3761038_3761857_-	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|440aa|up_5|NZ_CP018756.1_3762600_3763920_-	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|414aa|up_4|NZ_CP018756.1_3764105_3765347_+	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1078aa|up_3|NZ_CP018756.1_3765421_3768655_+	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|1041aa|up_2|NZ_CP018756.1_3768686_3771809_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|686aa|up_1|NZ_CP018756.1_3772062_3774120_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|727aa|up_0|NZ_CP018756.1_3774264_3776445_+	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|265aa|down_0|NZ_CP018756.1_3776682_3777477_+	cd05233, SDR_c, classical (c) SDRs	NA|630aa|down_1|NZ_CP018756.1_3777600_3779490_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|96aa|down_2|NZ_CP018756.1_3779672_3779960_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|94aa|down_3|NZ_CP018756.1_3779993_3780275_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|142aa|down_4|NZ_CP018756.1_3780322_3780748_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|147aa|down_5|NZ_CP018756.1_3780878_3781319_+	NA	NA|296aa|down_6|NZ_CP018756.1_3781357_3782245_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|302aa|down_7|NZ_CP018756.1_3782389_3783295_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|131aa|down_8|NZ_CP018756.1_3783401_3783794_-	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|156aa|down_9|NZ_CP018756.1_3783825_3784293_-	COG1664, CcmA, Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	26	3856489-3856580	25	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	CACCCGAAATGCCCGCGCTGCGCGCGGTAG	30	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|107aa|up_5|NZ_CP018756.1_3850065_3850386_-,NA|62aa|down_6|NZ_CP018756.1_3863179_3863365_-,NA|299aa|down_7|NZ_CP018756.1_3863664_3864561_+,NA|139aa|down_8|NZ_CP018756.1_3864587_3865004_-,NA|281aa|down_9|NZ_CP018756.1_3865110_3865953_-	NA|145aa|up_9|NZ_CP018756.1_3847136_3847571_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|98aa|up_8|NZ_CP018756.1_3847719_3848013_+	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|220aa|up_7|NZ_CP018756.1_3848012_3848672_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|442aa|up_6|NZ_CP018756.1_3848668_3849994_+	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|107aa|up_5|NZ_CP018756.1_3850065_3850386_-	NA	NA|630aa|up_4|NZ_CP018756.1_3850429_3852319_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|285aa|up_3|NZ_CP018756.1_3852510_3853365_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|302aa|up_2|NZ_CP018756.1_3853506_3854412_-	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO	NA|324aa|up_1|NZ_CP018756.1_3854636_3855608_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|219aa|up_0|NZ_CP018756.1_3855799_3856456_+	TIGR03724, Probable_serine/threonine-protein_kinase, Kae1-associated kinase Bud32	NA|113aa|down_0|NZ_CP018756.1_3856631_3856970_-	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|85aa|down_1|NZ_CP018756.1_3857100_3857355_+	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown]	NA|350aa|down_2|NZ_CP018756.1_3857425_3858475_-	TIGR04463, Radical_SAM_domain_protein, radical SAM/SPASM domain protein maturase	NA|691aa|down_3|NZ_CP018756.1_3858494_3860567_-	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|412aa|down_4|NZ_CP018756.1_3860588_3861824_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|431aa|down_5|NZ_CP018756.1_3861820_3863113_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|62aa|down_6|NZ_CP018756.1_3863179_3863365_-	NA	NA|299aa|down_7|NZ_CP018756.1_3863664_3864561_+	NA	NA|139aa|down_8|NZ_CP018756.1_3864587_3865004_-	NA	NA|281aa|down_9|NZ_CP018756.1_3865110_3865953_-	NA
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	27	4511063-4511162	26	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	CGTGCCGACCAACGGTCGGCACCTACCA	28	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|146aa|up_0|NZ_CP018756.1_4510541_4510979_+,NA	NA|141aa|up_9|NZ_CP018756.1_4501749_4502172_+	cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT)	NA|269aa|up_8|NZ_CP018756.1_4502215_4503022_+	PRK05333, PRK05333, NAD-dependent protein deacetylase	NA|368aa|up_7|NZ_CP018756.1_4503251_4504355_+	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|304aa|up_6|NZ_CP018756.1_4504358_4505270_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|85aa|up_5|NZ_CP018756.1_4505392_4505647_+	pfam11391, DUF2798, Protein of unknown function (DUF2798)	NA|284aa|up_4|NZ_CP018756.1_4505707_4506559_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|209aa|up_3|NZ_CP018756.1_4506645_4507272_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|224aa|up_2|NZ_CP018756.1_4507328_4508000_-	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|up_1|NZ_CP018756.1_4508650_4510498_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|146aa|up_0|NZ_CP018756.1_4510541_4510979_+	NA	NA|456aa|down_0|NZ_CP018756.1_4511393_4512761_-	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only]	NA|502aa|down_1|NZ_CP018756.1_4512875_4514381_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|389aa|down_2|NZ_CP018756.1_4514395_4515562_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|266aa|down_3|NZ_CP018756.1_4515558_4516356_+	PRK09076, PRK09076, enoyl-CoA hydratase; Provisional	NA|392aa|down_4|NZ_CP018756.1_4516352_4517528_+	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|297aa|down_5|NZ_CP018756.1_4517524_4518415_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|142aa|down_6|NZ_CP018756.1_4518563_4518989_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|327aa|down_7|NZ_CP018756.1_4519098_4520079_-	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|485aa|down_8|NZ_CP018756.1_4520287_4521742_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|416aa|down_9|NZ_CP018756.1_4521914_4523162_-	pfam13391, HNH_2, HNH endonuclease
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	28	4586064-4586159	27	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	TGGTGGGTGCCGACCGTTGGTCGGCAC	27	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|163aa|up_8|NZ_CP018756.1_4576103_4576592_+,NA|31aa|down_5|NZ_CP018756.1_4594002_4594095_-,NA|215aa|down_6|NZ_CP018756.1_4594222_4594867_-	NA|156aa|up_9|NZ_CP018756.1_4575551_4576019_-	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|up_8|NZ_CP018756.1_4576103_4576592_+	NA	NA|251aa|up_7|NZ_CP018756.1_4576683_4577436_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|295aa|up_6|NZ_CP018756.1_4577581_4578466_-	COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]	NA|563aa|up_5|NZ_CP018756.1_4578487_4580176_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|235aa|up_4|NZ_CP018756.1_4580303_4581008_-	PRK00024, PRK00024, DNA repair protein RadC	NA|209aa|up_3|NZ_CP018756.1_4581078_4581705_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|423aa|up_2|NZ_CP018756.1_4581932_4583201_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|163aa|up_1|NZ_CP018756.1_4583197_4583686_+	PRK00601, dut, dUTP diphosphatase	NA|786aa|up_0|NZ_CP018756.1_4583698_4586056_+	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|238aa|down_0|NZ_CP018756.1_4586162_4586876_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|887aa|down_1|NZ_CP018756.1_4586856_4589517_-	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|216aa|down_2|NZ_CP018756.1_4589568_4590216_-	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|686aa|down_3|NZ_CP018756.1_4590212_4592270_-	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|570aa|down_4|NZ_CP018756.1_4592280_4593990_-	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|31aa|down_5|NZ_CP018756.1_4594002_4594095_-	NA	NA|215aa|down_6|NZ_CP018756.1_4594222_4594867_-	NA	NA|220aa|down_7|NZ_CP018756.1_4594883_4595543_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|267aa|down_8|NZ_CP018756.1_4595705_4596506_+	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|432aa|down_9|NZ_CP018756.1_4596502_4597798_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	29	4631374-4631476	28	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	GCAGCCGACCAACGGTCGGCTCTAC	25	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|147aa|up_6|NZ_CP018756.1_4622438_4622879_+,NA|190aa|down_4|NZ_CP018756.1_4634158_4634728_+,NA|270aa|down_7|NZ_CP018756.1_4636967_4637777_+,NA|134aa|down_8|NZ_CP018756.1_4638052_4638454_+,NA|251aa|down_9|NZ_CP018756.1_4638450_4639203_+	NA|140aa|up_9|NZ_CP018756.1_4619496_4619916_+	PRK08366, vorA, 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed	NA|231aa|up_8|NZ_CP018756.1_4619951_4620644_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|476aa|up_7|NZ_CP018756.1_4620872_4622300_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|147aa|up_6|NZ_CP018756.1_4622438_4622879_+	NA	NA|200aa|up_5|NZ_CP018756.1_4622988_4623588_+	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|356aa|up_4|NZ_CP018756.1_4623574_4624642_+	TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide adenylyltransferase, NadR type	NA|1073aa|up_3|NZ_CP018756.1_4624698_4627917_-	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|159aa|up_2|NZ_CP018756.1_4628191_4628668_+	pfam10003, DUF2244, Integral membrane protein (DUF2244)	NA|320aa|up_1|NZ_CP018756.1_4628679_4629639_+	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|536aa|up_0|NZ_CP018756.1_4629698_4631306_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|197aa|down_0|NZ_CP018756.1_4631571_4632162_+	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|292aa|down_1|NZ_CP018756.1_4632175_4633051_+	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|73aa|down_2|NZ_CP018756.1_4633071_4633290_-	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|239aa|down_3|NZ_CP018756.1_4633347_4634064_+	cd06662, SURF1, SURF1 superfamily	NA|190aa|down_4|NZ_CP018756.1_4634158_4634728_+	NA	NA|388aa|down_5|NZ_CP018756.1_4634738_4635902_+	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|298aa|down_6|NZ_CP018756.1_4635906_4636800_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|270aa|down_7|NZ_CP018756.1_4636967_4637777_+	NA	NA|134aa|down_8|NZ_CP018756.1_4638052_4638454_+	NA	NA|251aa|down_9|NZ_CP018756.1_4638450_4639203_+	NA
GCF_002025605.1_ASM202560v1	NZ_CP018756	Stenotrophomonas maltophilia strain AA1 chromosome, complete genome	30	4636821-4636906	29	CRISPRCasFinder	no		RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	Orphan	ACATCCACGCATGGCGTGGATCTACT	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,csa3,cas3,Cas9_archaeal,DinG	NA|87aa|up_7|NZ_CP018756.1_4631314_4631575_+,NA|190aa|up_2|NZ_CP018756.1_4634158_4634728_+,NA|270aa|down_0|NZ_CP018756.1_4636967_4637777_+,NA|134aa|down_1|NZ_CP018756.1_4638052_4638454_+,NA|251aa|down_2|NZ_CP018756.1_4638450_4639203_+	NA|320aa|up_9|NZ_CP018756.1_4628679_4629639_+	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|536aa|up_8|NZ_CP018756.1_4629698_4631306_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|87aa|up_7|NZ_CP018756.1_4631314_4631575_+	NA	NA|197aa|up_6|NZ_CP018756.1_4631571_4632162_+	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|292aa|up_5|NZ_CP018756.1_4632175_4633051_+	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|73aa|up_4|NZ_CP018756.1_4633071_4633290_-	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|239aa|up_3|NZ_CP018756.1_4633347_4634064_+	cd06662, SURF1, SURF1 superfamily	NA|190aa|up_2|NZ_CP018756.1_4634158_4634728_+	NA	NA|388aa|up_1|NZ_CP018756.1_4634738_4635902_+	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|298aa|up_0|NZ_CP018756.1_4635906_4636800_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|270aa|down_0|NZ_CP018756.1_4636967_4637777_+	NA	NA|134aa|down_1|NZ_CP018756.1_4638052_4638454_+	NA	NA|251aa|down_2|NZ_CP018756.1_4638450_4639203_+	NA	NA|324aa|down_3|NZ_CP018756.1_4639292_4640264_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|167aa|down_4|NZ_CP018756.1_4640291_4640792_-	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982	NA|581aa|down_5|NZ_CP018756.1_4640817_4642560_-	PRK05667, dnaG, DNA primase; Validated	NA|307aa|down_6|NZ_CP018756.1_4642621_4643542_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|148aa|down_7|NZ_CP018756.1_4643668_4644112_-	pfam09424, YqeY, Yqey-like protein	NA|72aa|down_8|NZ_CP018756.1_4644245_4644461_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|342aa|down_9|NZ_CP018756.1_4644626_4645652_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
