The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 2
NZ_CP018846	Pseudomonas putida strain AA7 chromosome, complete genome	6137024	1711323	1718957	6137024		uncultured_Caudovirales_phage(77.78%)	11	NA	NA
WP_079227314.1|1711323_1712328_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	79.2	2.9e-151
WP_027919749.1|1712324_1712660_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	75.7	4.9e-42
WP_079227315.1|1712656_1712953_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	60.6	8.1e-25
WP_079227316.1|1712952_1713312_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	65.8	2.3e-37
WP_079227317.1|1713313_1713706_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	80.6	5.0e-54
WP_079227318.1|1713882_1715262_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	5.7e-28
WP_027919754.1|1715566_1716238_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.5	3.1e-104
WP_079227319.1|1716579_1717749_-	DUF3596 domain-containing protein	NA	A0A2H4JGM5	uncultured_Caudovirales_phage	64.5	1.1e-149
WP_079227321.1|1718051_1718330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079227322.1|1718397_1718613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079227323.1|1718609_1718957_-	hypothetical protein	NA	A0A0U4JP55	Pseudomonas_phage	58.3	1.1e-25
>prophage 3
NZ_CP018846	Pseudomonas putida strain AA7 chromosome, complete genome	6137024	4393772	4506123	6137024	protease,head,holin,plate,capsid,integrase,tRNA,terminase,tail,lysis,portal	Pseudomonas_phage(38.96%)	131	4385204:4385245	4512341:4512382
4385204:4385245	attL	GTAGGAGCGGCCTTGCCGGGGCGCCGGACCGGTCGGAAAGGG	NA	NA	NA	NA
WP_079229340.1|4393772_4394297_+|tail	phage tail protein	tail	A0A222ZFV4	Arthrobacter_phage	33.7	4.3e-13
WP_079229341.1|4394336_4394906_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_079229342.1|4394921_4395452_+|tail	tail fiber protein	tail	E3T4R8	Cafeteria_roenbergensis_virus	34.0	5.4e-11
WP_079229343.1|4395451_4396003_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_161492852.1|4396106_4402358_+	IPT/TIG domain-containing protein	NA	A0A160DDD4	Gordonia_phage	47.9	8.6e-07
WP_079229346.1|4403158_4403833_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	36.2	2.0e-26
WP_079229347.1|4403849_4404497_-	7-carboxy-7-deazaguanine synthase QueE	NA	NA	NA	NA	NA
WP_079229348.1|4404656_4405472_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_023381906.1|4405478_4405976_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_192858727.1|4406030_4407311_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_079229350.1|4407328_4408405_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_008090221.1|4408404_4408857_-	protein TolR	NA	NA	NA	NA	NA
WP_027919953.1|4408871_4409567_-	protein TolQ	NA	NA	NA	NA	NA
WP_027919954.1|4409569_4410022_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_027919955.1|4410147_4411194_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	27.4	1.0e-05
WP_079229351.1|4411190_4411808_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_079229352.1|4411917_4412442_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_027919958.1|4412582_4413329_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_027919959.1|4413438_4415214_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	26.3	1.3e-11
WP_027919960.1|4415308_4415530_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_079229353.1|4415622_4415949_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_027919962.1|4416099_4416573_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	36.4	4.0e-18
WP_079229354.1|4416851_4417445_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	48.3	2.3e-10
WP_027919964.1|4417483_4417690_-	SlyX family protein	NA	NA	NA	NA	NA
WP_079229355.1|4417691_4418120_-	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_079229356.1|4418860_4420150_+	OprD family porin	NA	NA	NA	NA	NA
WP_079229357.1|4420310_4422026_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_079229358.1|4422046_4423000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_192858728.1|4423031_4424090_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_079229360.1|4425048_4427691_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA	NA
WP_079229361.1|4427690_4428983_+	virulence factor family protein	NA	NA	NA	NA	NA
WP_079229362.1|4429159_4431070_-	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	34.5	5.4e-77
WP_027919973.1|4431305_4432637_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_079229363.1|4432706_4433456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229364.1|4433510_4435271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229365.1|4435267_4436113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152031580.1|4436244_4436586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_192858669.1|4436595_4436901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079229367.1|4437129_4437585_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_079229368.1|4437704_4438415_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_054883423.1|4438462_4438924_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	50.0	1.1e-36
WP_079229369.1|4438930_4439626_+|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_079229370.1|4439690_4440470_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_079229371.1|4440588_4441515_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_060484470.1|4441511_4441877_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_027919985.1|4441950_4442601_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_079229372.1|4442780_4443491_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_079229373.1|4443716_4444136_+	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA	NA
WP_079229374.1|4444136_4444340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229375.1|4444632_4445751_+	LOG family protein	NA	NA	NA	NA	NA
WP_079229376.1|4445816_4446287_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_079229377.1|4446298_4447366_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.3	1.1e-111
WP_079229378.1|4447470_4447953_-	nicotinamide-nucleotide amidohydrolase family protein	NA	B5TK85	Pseudomonas_phage	74.8	2.6e-57
WP_079229379.1|4448011_4448488_-|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	57.7	6.9e-34
WP_079229380.1|4448484_4449033_-	glycoside hydrolase family 19 protein	NA	B5TK83	Pseudomonas_phage	70.2	8.7e-73
WP_079229381.1|4449061_4450096_-	phage late control D family protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	69.9	2.9e-133
WP_027919996.1|4450100_4450307_-|tail	tail protein X	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	64.2	7.9e-19
WP_079229382.1|4450281_4451127_-|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	54.3	4.9e-83
WP_079229383.1|4451136_4452939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027919999.1|4453064_4453367_-|tail	phage tail assembly protein	tail	A0A2H4J873	uncultured_Caudovirales_phage	61.3	7.7e-23
WP_027920000.1|4453377_4453887_-|tail	phage major tail tube protein	tail	A0A2H4JBU0	uncultured_Caudovirales_phage	69.5	1.2e-63
WP_079229384.1|4453900_4455067_-|tail	phage tail sheath family protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	81.8	9.2e-181
WP_079229385.1|4455162_4455564_-	hypothetical protein	NA	A0A2H4J924	uncultured_Caudovirales_phage	35.4	7.4e-05
WP_152031583.1|4455575_4457552_-|tail	phage tail protein	tail	A0A077K818	Ralstonia_phage	54.0	5.5e-85
WP_079229386.1|4457544_4458153_-|tail	phage tail protein I	tail	A0A2H4JDH5	uncultured_Caudovirales_phage	59.4	2.3e-66
WP_079229387.1|4458154_4459036_-|plate	baseplate J/gp47 family protein	plate	A0A2H4JFK9	uncultured_Caudovirales_phage	69.3	3.9e-107
WP_079229388.1|4459032_4459359_-	GPW/gp25 family protein	NA	A0A2H4JA09	uncultured_Caudovirales_phage	67.9	1.5e-35
WP_079229389.1|4459431_4459992_-|plate	phage baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	72.6	1.1e-43
WP_079229390.1|4459988_4460486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027920007.1|4460497_4460836_-|holin	pyocin R2, holin	holin	B5TK61	Pseudomonas_phage	73.6	7.8e-40
WP_027920008.1|4461314_4462061_-	helix-turn-helix transcriptional regulator	NA	B5TK58	Pseudomonas_phage	85.1	1.7e-119
WP_079229391.1|4462409_4462697_-	hypothetical protein	NA	A0A2H4J7A7	uncultured_Caudovirales_phage	55.8	1.3e-22
WP_079229392.1|4462693_4462987_-	hypothetical protein	NA	A0A2H4JER5	uncultured_Caudovirales_phage	70.1	2.5e-34
WP_152031584.1|4463062_4463287_-	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	74.3	1.2e-25
WP_152031585.1|4463496_4464300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079230596.1|4464363_4464642_-	hypothetical protein	NA	H2BDA1	Pseudomonas_phage	66.7	5.6e-20
WP_079229394.1|4464650_4465013_-	hypothetical protein	NA	J7HXL1	Pseudomonas_phage	49.5	3.4e-17
WP_079229395.1|4465009_4465498_-	glycoside hydrolase family 104 protein	NA	Q9MC90	Pseudomonas_phage	63.8	3.7e-51
WP_079230597.1|4465553_4466360_-	hypothetical protein	NA	A0A2H4J1J6	uncultured_Caudovirales_phage	72.0	1.3e-61
WP_079229396.1|4466581_4467637_-	hypothetical protein	NA	A0A2H4JA10	uncultured_Caudovirales_phage	74.1	1.8e-151
WP_079229397.1|4467636_4470816_-	DUF1983 domain-containing protein	NA	A0A2H4J0B1	uncultured_Caudovirales_phage	79.3	0.0e+00
WP_079229398.1|4470812_4471211_-	hypothetical protein	NA	A0A2H4IYI8	uncultured_Caudovirales_phage	72.7	7.0e-56
WP_079229399.1|4471213_4471819_-	hypothetical protein	NA	A0A2H4J0R3	uncultured_Caudovirales_phage	78.1	5.6e-89
WP_079229400.1|4471818_4472403_-	hypothetical protein	NA	A0A2H4IYI9	uncultured_Caudovirales_phage	57.7	3.7e-61
WP_079229401.1|4472446_4475701_-|tail	phage tail tape measure protein	tail	A0A2D1GNQ1	Pseudomonas_phage	65.7	1.5e-241
WP_152031586.1|4475762_4476020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229402.1|4476070_4476280_-	hypothetical protein	NA	A0A2D1GNK2	Pseudomonas_phage	70.6	3.5e-14
WP_079229403.1|4476321_4476654_-	hypothetical protein	NA	A0A2D1GNT5	Pseudomonas_phage	72.3	9.7e-35
WP_079229404.1|4476694_4477195_-	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	85.2	3.8e-75
WP_079229405.1|4477250_4477637_-	DUF3168 domain-containing protein	NA	A0A2D1GNT4	Pseudomonas_phage	85.2	8.0e-57
WP_079229406.1|4477629_4478130_-	HK97 gp10 family phage protein	NA	A0A2D1GNN2	Pseudomonas_phage	69.5	8.2e-62
WP_079229407.1|4478133_4478313_-	hypothetical protein	NA	A0A2D1GNQ5	Pseudomonas_phage	48.2	2.3e-06
WP_079229408.1|4478321_4478648_-|head,tail	head-tail adaptor protein	head,tail	A0A2D1GNG1	Pseudomonas_phage	62.0	3.3e-27
WP_079229409.1|4478644_4478962_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2D1GNK0	Pseudomonas_phage	73.3	3.3e-40
WP_079230598.1|4478954_4479221_-	hypothetical protein	NA	A0A2D1GNQ9	Pseudomonas_phage	64.3	6.4e-21
WP_079229410.1|4479420_4480623_-|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	80.0	4.4e-186
WP_079229411.1|4480612_4481287_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2D1GNL2	Pseudomonas_phage	84.5	7.6e-103
WP_079229412.1|4481264_4482476_-|portal	phage portal protein	portal	A0A2D1GNU4	Pseudomonas_phage	84.8	9.5e-205
WP_079229414.1|4482681_4484358_-|terminase	terminase large subunit	terminase	A0A0N7KZG0	Stx2-converting_phage	60.8	5.2e-193
WP_079229415.1|4484361_4484862_-|terminase	terminase small subunit	terminase	A0A2H4J8R0	uncultured_Caudovirales_phage	37.2	3.9e-11
WP_079229416.1|4485027_4485363_-	HNH endonuclease	NA	C4ML58	Xanthomonas_virus	46.8	9.5e-22
WP_079229417.1|4485362_4485686_-|holin	phage holin, lambda family	holin	A0A1W6JTC7	Pseudomonas_phage	53.5	1.0e-25
WP_079229418.1|4485921_4486164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471606.1|4486267_4486657_-	antitermination protein Q	NA	A0A1W6JTD2	Pseudomonas_phage	64.8	3.5e-44
WP_079229420.1|4486985_4488272_-|integrase	site-specific integrase	integrase	A0A2D1GND4	Pseudomonas_phage	53.1	7.2e-126
WP_079229421.1|4488268_4488697_-	VRR-NUC domain-containing protein	NA	A0A2D1GNH3	Pseudomonas_phage	76.5	1.6e-50
WP_079229422.1|4488693_4488990_-	DUF1364 domain-containing protein	NA	A0A192Y6R9	Salmonella_phage	70.8	3.4e-31
WP_079229423.1|4488992_4489805_-	ATP-binding protein	NA	A0A2H4J3E5	uncultured_Caudovirales_phage	67.9	8.0e-99
WP_079229424.1|4489794_4490649_-	replication protein	NA	B5WZX9	Pseudomonas_phage	37.3	1.9e-37
WP_079229425.1|4490788_4491022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079229426.1|4491150_4491387_-	helix-turn-helix domain-containing protein	NA	W6MWX8	Pseudomonas_phage	73.4	1.4e-16
WP_079230599.1|4491494_4492190_+	helix-turn-helix transcriptional regulator	NA	B5TK58	Pseudomonas_phage	56.5	8.8e-70
WP_049587761.1|4492731_4493115_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JA92	uncultured_Caudovirales_phage	60.0	9.8e-23
WP_079229427.1|4493134_4493404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079229428.1|4493400_4493943_+	hypothetical protein	NA	A0A2H4J7C8	uncultured_Caudovirales_phage	31.1	1.9e-11
WP_079229429.1|4494024_4494333_+	hypothetical protein	NA	A0A2H4JAQ1	uncultured_Caudovirales_phage	53.1	2.0e-18
WP_079229430.1|4494337_4494919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152031587.1|4495021_4495405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229432.1|4495507_4495687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229433.1|4495821_4496601_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	31.0	1.3e-18
WP_079229434.1|4496610_4497534_+	DNA cytosine methyltransferase	NA	A0A142KB20	Gordonia_phage	39.1	7.1e-27
WP_079229435.1|4497584_4498235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229436.1|4499099_4499510_+	hypothetical protein	NA	Q6JII8	Burkholderia_virus	41.9	8.1e-15
WP_079229437.1|4499506_4499758_+	hypothetical protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	94.0	1.4e-38
WP_152031636.1|4499820_4500093_+	hypothetical protein	NA	A0A2H4JA03	uncultured_Caudovirales_phage	88.2	6.5e-37
WP_079229438.1|4500083_4500275_+	DUF4224 domain-containing protein	NA	A0A1B0VMB6	Pseudomonas_phage	65.1	6.2e-18
WP_079229439.1|4500347_4501004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079229440.1|4501000_4501324_-	STAS-like domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	38.7	1.3e-07
WP_152031588.1|4501326_4502421_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_152031589.1|4502521_4503499_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B0VP19	Pseudomonas_phage	70.8	1.3e-132
WP_079229443.1|4503549_4506123_+	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	9.0e-27
4512341:4512382	attR	GTAGGAGCGGCCTTGCCGGGGCGCCGGACCGGTCGGAAAGGG	NA	NA	NA	NA
>prophage 4
NZ_CP018846	Pseudomonas putida strain AA7 chromosome, complete genome	6137024	4739294	4747076	6137024		Planktothrix_phage(16.67%)	10	NA	NA
WP_079229599.1|4739294_4740104_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.1	5.9e-25
WP_079229600.1|4740351_4741326_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.6	7.5e-35
WP_079229601.1|4741340_4741865_+	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	48.9	8.2e-28
WP_079229602.1|4741873_4742446_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_079229603.1|4742432_4742957_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_027920214.1|4742957_4743683_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	2.9e-23
WP_079229604.1|4743858_4745352_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003255135.1|4745430_4745739_+	ribosome-associated translation inhibitor RaiA	NA	A0A0M7QH33	Escherichia_phage	34.1	4.4e-05
WP_027920216.1|4745751_4746219_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_079229605.1|4746221_4747076_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.9	2.4e-08
