The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	27282	79632	4110587	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36620_37811_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38060_38972_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38973_41112_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41108_41648_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41651_42380_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42366_43260_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43330_43726_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43735_44266_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44394_44694_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44711_45662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46248_46797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46768_47005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47132_48026_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49195_50443_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50439_51054_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_029443813.1|52181_53438_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54669_55404_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55409_56000_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56024_56714_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56710_57472_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57551_58451_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58544_59495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60295_61522_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61521_61941_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62124_63066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63489_64464_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64520_65102_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65114_65417_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65535_66594_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66628_67900_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68529_69711_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70132_71083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71176_71491_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72683_74591_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74752_75373_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75404_75986_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76074_76326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76327_77170_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77275_78685_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78681_79632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	108474	176298	4110587	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|108474_109425_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110324_111518_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111599_112229_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112290_112974_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112983_114666_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114953_115301_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115391_115709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115991_117008_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117083_117884_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117880_118756_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118766_120059_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120101_121142_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121247_122069_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|122169_123120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123218_124124_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124120_124954_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125790_126801_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126797_127187_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128080_129334_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129424_131125_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131551_132199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132197_133637_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133747_134032_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134059_134938_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136204_137155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|137573_139082_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|139828_143791_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|143843_144626_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|144713_145937_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|145920_146853_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|146858_147671_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|148983_149955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|150073_150856_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|151622_152603_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|152599_153328_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|153352_153784_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|153885_154761_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|154811_156011_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|156115_156577_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|156682_158080_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|158076_158754_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|158809_160120_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|160131_160830_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|160993_161770_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|161935_162958_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|163186_163822_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|163827_165381_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|165939_166890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168333_169236_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169213_169843_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170125_171556_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171589_172219_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172267_173875_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173899_174583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174664_175141_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175347_176298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	179680	237317	4110587	protease,tRNA,transposase	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|179680_181759_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182008_182281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182382_183468_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183471_185376_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185372_189047_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189107_189671_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189678_190101_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190128_190548_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190576_191023_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191149_191647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191801_194072_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194147_195353_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195451_196402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196504_197140_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197136_198030_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198424_199525_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199606_199981_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200040_202905_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203049_203790_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203859_205071_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205099_206068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206681_207632_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207788_208112_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208216_209257_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209262_210042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210087_210384_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210409_210685_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210741_211386_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211385_212072_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212270_213053_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213103_213829_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213860_215210_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215321_216254_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216711_219507_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220100_222944_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223114_223834_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223872_224421_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224575_225475_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225499_226450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226668_227364_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227380_228793_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228905_230336_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230377_232291_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232609_233176_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233266_234268_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929591.1|234382_235333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235419_236370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236366_237317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	251731	304067	4110587	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_003814337.1|251731_252673_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252669_254559_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254645_255284_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255426_256812_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256742_257279_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257430_258822_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258838_259819_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259954_260938_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261002_261902_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262008_263763_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263770_264895_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264908_265889_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266619_267570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268129_268675_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268800_270378_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270393_271548_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271561_271687_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271683_273435_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273431_275111_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275173_275722_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276864_277143_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278186_279137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279123_279339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279414_279576_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280242_280692_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280701_281313_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281471_282320_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282345_283728_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283792_284434_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284573_285032_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285056_285833_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285886_287023_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287019_287970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|288068_288695_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|288717_289644_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|289652_291239_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|291235_292240_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|292439_293300_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|293331_294333_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|294403_295213_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|295290_297150_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|297278_298481_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|298594_299476_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|300978_301539_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|301598_302549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|302740_303028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|303116_304067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	391903	449412	4110587	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_010929591.1|391903_392854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392990_393908_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393904_394153_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394149_395355_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395427_396423_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396445_397666_-	CoA transferase	NA	NA	NA	NA	NA
WP_054604412.1|397662_398307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400037_400847_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401151_402105_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402203_403187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403113_403815_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403863_404634_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404630_405809_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405976_407683_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407679_408576_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408616_410206_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410255_411248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411316_411916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412376_413357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413432_414383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414471_415386_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415382_416042_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416131_417055_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417060_417516_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417512_418616_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418574_418844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418803_420423_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420419_421478_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421607_422102_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422194_423172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423367_424573_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424569_426081_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426096_427410_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427600_427780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428189_428924_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431368_432319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432450_432849_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433259_433730_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433818_434163_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434262_435663_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437451_437970_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438080_438836_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439031_440264_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440256_441042_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441108_442080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442090_443068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443193_444366_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444392_445421_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445486_446680_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448461_449412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	591466	652657	4110587	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591466_592417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592892_593783_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593779_594601_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594800_595292_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595310_596384_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596430_597534_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597609_598230_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598250_598760_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598814_599066_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599129_600263_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600270_600657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600653_603173_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603601_603940_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603936_604443_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604504_605305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605415_606357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606450_607986_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609665_611516_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611519_612353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612352_613294_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613545_614517_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614658_616947_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617253_618162_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618216_619182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619256_620918_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620989_621700_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621666_621831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621848_622799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623497_623881_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623938_624541_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624558_624960_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625075_625987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625983_626565_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627359_628094_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628134_629184_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629331_629910_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630296_631274_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631367_635762_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635962_636811_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636969_637782_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637837_638788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638886_639687_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639748_640132_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640143_641496_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641783_642113_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642115_642865_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643047_643968_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644014_644227_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644249_644672_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644688_645789_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645885_647403_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647478_648318_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648339_649212_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649302_650397_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650690_651641_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651715_652657_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	657981	704172	4110587	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657981_659007_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659047_659287_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659356_660946_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660945_661494_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661574_662147_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662165_663077_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663150_664119_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664241_665315_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665319_667140_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667216_668167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668255_668591_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668724_669375_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669396_670815_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670884_671640_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671608_672367_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672377_673259_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673275_673983_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673985_674744_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674953_676696_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676688_677213_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677252_678047_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678214_679288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679386_680337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680588_680795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680866_681478_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682032_682284_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682276_682966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682983_683205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683222_684173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684812_685298_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685284_686562_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686564_687983_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688011_689067_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689072_689315_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689437_690040_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690468_691419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692093_692345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692407_692890_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692903_693092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693091_693487_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693483_693882_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693878_694301_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694308_694809_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695063_695582_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695591_695921_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695938_696229_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696254_698867_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698876_699236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699303_699837_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699833_700223_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700215_704172_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	710338	780414	4110587	tRNA,transposase	Planktothrix_phage(40.0%)	58	NA	NA
WP_003814636.1|710338_712069_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712121_712550_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712552_713233_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713232_713691_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713727_714702_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714718_716035_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716066_716564_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716650_717340_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717339_718389_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718385_719180_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719348_719699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719674_720232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721361_722312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724449_725679_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725681_727124_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727228_728374_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728405_729203_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729227_730787_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730783_733156_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733265_734369_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734368_735061_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735204_735906_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735890_736268_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736999_737950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738109_738982_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739322_739541_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739580_740960_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741001_742399_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742438_744091_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744094_744979_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744978_745920_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745998_747618_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747784_748600_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748667_749237_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814461.1|750841_751939_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751972_753238_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753395_754346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754589_755180_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755195_757640_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757759_758731_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758862_759387_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759346_760297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760518_762714_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762786_763194_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763316_764267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|764382_764826_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|764888_765683_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|765848_766985_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|767055_768189_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|768338_768599_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|768632_768944_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|769368_770517_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|770631_771597_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|771865_772732_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|772862_774911_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|774928_776926_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|776960_778298_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_023853308.1|778560_780414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	887905	955881	4110587	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887905_888922_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889118_890102_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891700_893089_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893119_894109_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894219_895452_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895733_896534_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896556_898788_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899575_900022_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900043_900790_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900933_901911_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902544_903156_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903149_904367_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904507_905458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905454_906174_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906294_908454_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908544_908814_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908902_909109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909107_909635_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909653_910433_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910600_911617_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911689_912181_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912191_913907_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915070_916021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916017_917850_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918248_918908_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919435_920116_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920397_921114_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921128_922430_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924574_927463_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927686_929039_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929067_929589_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929585_931040_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931074_931323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931428_932304_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932329_933385_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933397_934189_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934221_935592_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936768_937719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937771_937993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938152_938365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938484_939603_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939699_939915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940108_940360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940472_941423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941419_941803_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941857_943672_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943821_944649_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944694_945675_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945671_945884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945880_947062_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947225_947960_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947961_950574_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950709_952623_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953238_953649_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953746_954832_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954930_955881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	999410	1071927	4110587	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|999410_1000361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000465_1001515_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001652_1002669_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004177_1004750_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004809_1005541_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005592_1006510_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007317_1010497_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010493_1011876_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011945_1012197_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012342_1012957_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013143_1015204_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015333_1016185_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016181_1016808_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016804_1018559_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018851_1021557_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021569_1023231_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023243_1025034_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025255_1026431_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1026473_1027424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027522_1028263_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028457_1030494_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030511_1031522_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031639_1032833_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032862_1033636_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033632_1034823_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034848_1035787_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035783_1038132_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038286_1038928_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040257_1040410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040441_1040990_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041008_1041494_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041671_1042610_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042612_1042930_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042975_1043920_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045600_1046251_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046304_1046640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046636_1047497_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047513_1047795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047868_1048132_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048375_1049326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049624_1050362_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050797_1051121_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051155_1051716_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051836_1052712_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052724_1053672_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053773_1054067_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054093_1056151_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056165_1056666_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056739_1058446_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059309_1060362_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060414_1060804_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060812_1061445_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061544_1062561_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063391_1064399_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064395_1066039_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066035_1066923_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067063_1067537_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067526_1068549_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068545_1069973_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070910_1071927_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	1075680	1136708	4110587	holin,tRNA,transposase	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1075680_1076817_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076813_1077887_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078044_1079481_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079571_1080213_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080548_1081565_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084712_1086134_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086397_1087114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087198_1087516_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087556_1087970_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087971_1088331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088373_1089918_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090001_1090832_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090866_1092021_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092063_1092936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093052_1095341_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096547_1097012_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097038_1097989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098006_1098144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098356_1099133_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099177_1100035_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100056_1101073_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101207_1102248_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102442_1104524_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104759_1106253_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106483_1107278_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107498_1108857_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108853_1109696_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109714_1111601_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111542_1111794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111838_1112471_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112489_1113092_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113243_1114194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114774_1115482_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115840_1116827_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116966_1117980_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117976_1118927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118944_1119085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119039_1119498_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119534_1120848_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120865_1121237_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121233_1122697_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122837_1123566_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123547_1126397_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126609_1127560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127727_1128552_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128551_1129430_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130334_1131450_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131478_1132273_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132269_1134135_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134213_1134846_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134842_1135145_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135187_1136708_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	1318998	1384427	4110587	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1318998_1319949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320717_1321356_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322245_1322692_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322773_1323475_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323475_1324243_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324239_1325478_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325477_1326404_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326506_1327622_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327637_1328588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328941_1329523_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329519_1330353_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330563_1331877_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332053_1332935_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332954_1333806_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333858_1334947_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335057_1336185_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336419_1337031_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337129_1338080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338301_1338679_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338826_1339324_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339320_1339848_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339981_1340797_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340809_1341991_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342038_1342932_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343058_1343529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343654_1344482_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344510_1345287_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345283_1345559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345573_1346038_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346049_1346751_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346860_1347361_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347443_1348622_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350249_1350585_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350772_1352221_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352278_1352623_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352729_1353269_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353361_1354312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354410_1355361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1355378_1355618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356099_1356531_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356712_1357117_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358353_1358677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358679_1359567_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359599_1360025_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360096_1360450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360689_1361196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361234_1362566_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362625_1363441_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363437_1364292_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367354_1369898_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371264_1373019_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373015_1375136_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375140_1377336_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377332_1380674_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383476_1384427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	1449025	1504513	4110587	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449025_1449976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451177_1451624_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451616_1453092_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453088_1453844_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453836_1454847_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454836_1456513_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456825_1457158_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457171_1457567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457576_1457903_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457899_1458226_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458152_1459175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459171_1459522_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459569_1459998_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460005_1461379_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461519_1461897_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462159_1463467_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463527_1464358_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464354_1464843_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464884_1466405_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466448_1466925_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467728_1470326_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470355_1471177_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471903_1472653_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472836_1473715_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473812_1474529_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474543_1475104_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475270_1476035_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476054_1476912_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476908_1478108_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478147_1479482_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479534_1481871_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481996_1482560_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482568_1483660_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483731_1484187_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484187_1484982_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484978_1486160_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486146_1486752_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486748_1487522_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487533_1488361_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488522_1490886_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490953_1491673_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491796_1492222_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492256_1493207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493324_1494251_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494316_1495474_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495454_1495922_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496069_1497020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497036_1497471_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497460_1497811_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498007_1499162_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499158_1500331_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500378_1501272_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501317_1501755_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501814_1502504_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502513_1503464_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503562_1504513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	1599211	1667296	4110587	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1599211_1599700_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599817_1600396_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1600501_1600870_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600968_1601919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601925_1603038_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603724_1604927_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1605130_1607791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1607803_1611208_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611875_1614101_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614147_1614474_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1614524_1615133_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615231_1616182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616251_1617016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617012_1617549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617715_1618567_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618626_1619253_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619249_1620200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620298_1621411_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621400_1622402_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622507_1624019_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624015_1625320_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625431_1625992_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626259_1626814_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627269_1627485_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627739_1630337_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630333_1631521_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632178_1632793_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632881_1634003_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634020_1634926_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635818_1636769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636950_1637703_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637771_1638431_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638427_1639156_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639168_1641448_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641472_1641676_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641717_1642350_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642485_1643403_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643399_1644113_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644350_1645121_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645125_1645725_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645969_1647460_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647518_1647803_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648368_1649295_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649431_1650172_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650338_1651715_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651896_1652802_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654453_1656256_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656373_1657024_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657122_1658073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658094_1659315_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1659500_1660913_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1660976_1662044_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662043_1663531_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1663540_1664485_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1664644_1665343_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1665420_1666326_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666345_1667296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	1703245	1758836	4110587	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_010931070.1|1703245_1704196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704254_1705028_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705020_1706577_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706573_1707524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708850_1709453_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709692_1710394_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710387_1711170_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711354_1712305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712403_1713141_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713330_1714089_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714135_1715125_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715302_1716271_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717810_1718779_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718787_1719729_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720202_1721213_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721203_1722718_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722714_1724061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724063_1725098_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725147_1726773_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727325_1728276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728380_1729328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729381_1731196_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731188_1731863_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731992_1735067_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735080_1735380_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735694_1736318_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736561_1737431_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737408_1738353_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738438_1739365_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739477_1740257_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740247_1741444_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741474_1742425_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742646_1743336_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743400_1744156_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744207_1745200_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745209_1746163_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746278_1747241_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748642_1749071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749067_1750018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750311_1751034_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751472_1752660_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1752663_1753014_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754763_1755735_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755748_1756462_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756466_1757384_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757490_1757787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757885_1758836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	1991601	2061253	4110587	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991601_1994259_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994336_1995539_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995535_1996048_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996170_1996608_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996884_1997835_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997933_1998884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1999047_2000943_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2001056_2001224_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001287_2001524_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2001892_2003044_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2004607_2005558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006009_2007011_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007183_2008041_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008037_2009300_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009400_2009775_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2009847_2011035_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011119_2011890_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012003_2012768_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012718_2014020_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2014016_2014823_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2016567_2017539_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017695_2018208_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018366_2019341_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020341_2021136_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021161_2021968_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022078_2022669_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022679_2023858_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023960_2024335_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024587_2025919_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025985_2029216_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030706_2031453_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031537_2031999_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032036_2033095_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033057_2034887_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034926_2035499_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036923_2037745_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038063_2039386_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039745_2040381_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040340_2041291_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042161_2043034_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043111_2044251_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044609_2045866_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045871_2046399_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046403_2047222_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047221_2047944_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047965_2048280_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048297_2049446_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049476_2050352_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050348_2051668_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051740_2052937_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052947_2054435_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057029_2057929_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058066_2059032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059130_2060081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060302_2061253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2072749	2122145	4110587	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072749_2073700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074837_2075134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075308_2076661_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076803_2077820_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079799_2080813_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2080899_2081805_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081961_2082306_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082463_2082922_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082935_2085152_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085148_2086210_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086238_2087213_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087164_2087983_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087995_2088604_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2088778_2089174_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089192_2090632_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090660_2091008_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091026_2091977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092629_2093580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093663_2095481_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095554_2096202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096214_2097144_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097313_2097778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098025_2098706_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098754_2100446_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100461_2101013_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101009_2101381_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101493_2102330_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102340_2102865_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102962_2103142_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103271_2104246_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104376_2104733_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104722_2105598_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105696_2106581_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106602_2107898_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108846_2109497_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2109584_2111105_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111362_2113228_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114273_2115224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115241_2115382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116196_2116556_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116543_2117980_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117976_2118630_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118626_2119820_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119923_2121198_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121194_2122145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2133349	2174040	4110587	protease,tRNA,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2133349_2134300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134398_2135349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135308_2135722_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136006_2136306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136715_2138998_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2139683_2141714_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141733_2141946_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142223_2142763_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142876_2144172_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144248_2145406_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145589_2146489_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146507_2147812_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147777_2148884_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148971_2149208_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149346_2150417_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150420_2151776_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2151802_2152960_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152965_2153604_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2153605_2154901_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2154950_2156237_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156252_2156759_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156755_2157904_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157931_2158357_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158679_2161562_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161654_2162410_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163175_2164525_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164623_2165574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165672_2166623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166696_2167170_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167195_2168404_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168400_2169174_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169173_2169797_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169962_2170223_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170526_2171108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171174_2171429_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171415_2174040_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2201823	2267372	4110587	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201823_2202774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202974_2203784_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2203908_2204859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204855_2205749_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205873_2206068_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206067_2206409_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206418_2208281_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208410_2208923_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208925_2209249_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209250_2209661_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209698_2210910_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210927_2211440_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211655_2212147_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212399_2214436_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214513_2215716_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215844_2216495_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218052_2219003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219573_2219786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219803_2220535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220569_2221211_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221203_2221872_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224084_2224861_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224882_2226040_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226036_2226468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2226464_2227262_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227281_2227683_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227749_2228721_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228786_2230010_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230237_2231188_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231311_2233765_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233953_2235258_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235362_2236016_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236018_2237329_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2237507_2238086_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238197_2238398_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238743_2239310_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239393_2239597_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239903_2240224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240265_2240547_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240621_2241878_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242260_2242590_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244160_2244982_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244981_2246121_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246127_2247024_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2247038_2248946_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249305_2251918_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251970_2254271_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254267_2255476_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2255737_2256112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256108_2257059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257157_2259152_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259211_2260177_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260166_2263028_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263030_2263537_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263641_2264850_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264851_2265790_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265951_2266425_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266421_2267372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2536225	2601946	4110587	protease,tRNA,transposase	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2536225_2538169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538165_2539086_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539105_2539693_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2539685_2540576_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2540572_2541334_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541339_2542224_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542246_2544040_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544170_2545658_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2545695_2546754_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2546753_2547254_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547266_2547866_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2547862_2548363_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548364_2549594_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2549783_2550023_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550205_2550958_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2550959_2551895_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2551976_2552963_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2552962_2554021_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554077_2554260_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554311_2554905_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555013_2555613_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2555609_2556320_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556321_2557149_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2558965_2560207_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560218_2560992_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561018_2561969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562067_2562850_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562938_2564165_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2564890_2566276_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566294_2566900_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566896_2568753_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568749_2569550_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569564_2570758_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570825_2571800_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571922_2573146_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573256_2575461_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575755_2576415_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576422_2576629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576967_2577723_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2577993_2578509_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578781_2579099_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579286_2579523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579813_2581169_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581215_2582556_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582657_2583290_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583289_2585659_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585691_2586651_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586637_2587324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587320_2587653_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587768_2588719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588817_2589768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589764_2591831_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591830_2592103_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592797_2592887_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592886_2594671_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2594694_2596860_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596870_2597470_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600291_2600987_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2600995_2601946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2688063	2733794	4110587	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2688063_2689014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689124_2689307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689406_2690003_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690186_2691278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691777_2692188_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692246_2692576_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2692593_2695011_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695023_2696046_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696120_2696480_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696495_2696693_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003816756.1|2698172_2698622_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698618_2699569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699679_2701128_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2701242_2701488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701627_2702578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702822_2703536_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703658_2703886_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704180_2704819_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704927_2705962_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705958_2706909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707324_2707849_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707852_2708122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708320_2709382_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709465_2711100_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711101_2711905_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711933_2712893_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712896_2714411_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050821245.1|2714447_2715710_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931018.1|2715884_2716355_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716390_2717002_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717032_2717656_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717736_2719269_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2719303_2720521_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720588_2721620_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721616_2722786_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2722779_2723460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2723621_2724464_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724626_2725598_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725769_2726648_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726670_2727741_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727781_2728732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853289.1|2728749_2728968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931030.1|2729024_2730383_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931031.1|2730494_2732222_+	sulfate permease	NA	NA	NA	NA	NA
WP_005013747.1|2732843_2733794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2784197	2857067	4110587	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784197_2784614_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784724_2785357_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785385_2785829_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785850_2786942_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2786996_2787797_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787932_2788553_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2788692_2789166_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790305_2791256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069122.1|2791252_2798914_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799154_2803201_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803513_2804095_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804091_2805390_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805469_2806498_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806758_2807709_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807705_2808656_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808972_2809578_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809631_2810945_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811019_2811490_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811489_2812278_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812288_2813941_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814028_2814979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816140_2816647_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816643_2817408_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817423_2817708_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817772_2818762_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818933_2819863_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819834_2820521_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820554_2821100_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821144_2822410_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822406_2823309_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824490_2825435_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825529_2827047_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827088_2828717_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828824_2829706_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832818_2833193_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833217_2833556_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833599_2835234_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835272_2836619_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836726_2838148_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838217_2838802_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838904_2839855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839989_2841096_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841106_2842204_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842348_2843554_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843560_2844082_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844078_2844561_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844566_2844818_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844798_2845284_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845419_2848881_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848898_2849783_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849792_2850224_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850470_2850974_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851051_2852452_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852526_2853402_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853398_2854406_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854873_2855179_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855269_2855860_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856050_2857067_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2860210	2928069	4110587	protease,transposase	uncultured_Mediterranean_phage(28.57%)	51	NA	NA
WP_023995489.1|2860210_2861161_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861259_2862210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862206_2863001_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863032_2863737_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863811_2864612_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864608_2865016_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865012_2865654_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865646_2867647_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868907_2870239_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870235_2871186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|2871284_2872235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873941_2874208_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874915_2875254_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879806_2880409_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880505_2881795_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881852_2882584_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882580_2883384_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883380_2884469_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884465_2885395_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885543_2886689_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2886710_2887661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887678_2887837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887991_2891813_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891969_2892638_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892642_2894316_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894334_2895654_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895658_2897974_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898029_2900198_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900194_2905375_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905473_2905788_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906015_2906261_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906355_2906874_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906973_2908179_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908294_2909692_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909808_2910387_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910459_2911851_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912018_2912969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913249_2913870_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913866_2914280_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914276_2915320_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915375_2915564_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915573_2916338_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916428_2917085_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917176_2917935_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917960_2919562_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919762_2920767_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920867_2921131_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921248_2922025_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922615_2923566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925949_2927062_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927118_2928069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	2958455	2997644	4110587	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2958455_2959406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959423_2959573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959526_2960423_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962700_2964926_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965090_2966179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966135_2966789_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966836_2967634_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968165_2969116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969196_2970345_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970401_2971352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971450_2971756_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971784_2972219_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972220_2973465_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973461_2974172_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974186_2975098_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975460_2975865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975861_2976320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976326_2977235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977231_2978098_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978084_2978912_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978922_2980050_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981127_2982366_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982407_2983670_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983676_2984429_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984480_2984666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984941_2985406_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985437_2986097_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986241_2988350_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988346_2989297_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989400_2990021_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990124_2990865_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991999_2993124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993169_2993538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993779_2994730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995765_2996308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996505_2996676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996693_2997644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	3385237	3438978	4110587	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3385237_3386188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386592_3387237_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387261_3387846_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387946_3388564_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388566_3390282_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390278_3390587_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390603_3391221_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391265_3391568_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391668_3392523_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392710_3392935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393104_3393377_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393794_3394202_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394571_3395366_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395466_3396702_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396770_3397787_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397798_3399175_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399171_3400368_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400364_3401903_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401899_3403159_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405099_3406050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406816_3407911_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407903_3409238_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409191_3409875_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409900_3411064_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3411060_3412062_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412061_3412934_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412930_3413680_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413676_3414468_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414464_3415604_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415879_3416665_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416698_3417481_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417484_3417874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3419013_3419877_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419912_3421001_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3420997_3421948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422301_3425280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426206_3427085_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3429033_3429984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429980_3430448_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430490_3431261_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431281_3432082_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432092_3433502_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433596_3434382_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434621_3435638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435745_3436138_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436275_3436956_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436960_3437932_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438027_3438978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	3445133	3504433	4110587	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3445133_3446897_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447008_3447887_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447999_3448815_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448818_3449070_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449154_3450171_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450501_3450723_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453083_3454001_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454498_3455707_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455786_3457358_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457475_3458411_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458599_3459544_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460111_3465829_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465834_3466962_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467017_3467644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467915_3468932_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3469027_3469738_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469734_3470724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470819_3472451_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472453_3473191_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473346_3474219_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474568_3475708_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475704_3476364_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476435_3477068_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477097_3477616_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477626_3478736_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478782_3479637_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479638_3480541_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481763_3482714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484470_3485460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485635_3486424_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486420_3487452_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487470_3488034_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488089_3489610_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489873_3490578_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490585_3491314_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491428_3491803_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491845_3493135_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493131_3494301_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494297_3495137_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495196_3496132_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496144_3497095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497193_3498156_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498187_3498547_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498671_3499574_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499575_3501348_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501382_3502159_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503482_3504433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	3519371	3577444	4110587	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519371_3520322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520450_3521584_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521627_3522533_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522535_3524236_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524232_3525153_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525160_3526138_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526196_3527231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529205_3529442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3529568_3530432_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530520_3531342_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531421_3532159_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532155_3533148_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533300_3533924_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533968_3535117_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537440_3538391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538731_3539682_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539780_3540731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541027_3541525_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541567_3543343_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543350_3544217_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544223_3544958_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546127_3546922_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547211_3547802_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547835_3549164_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549238_3550384_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550495_3551494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551456_3551891_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553407_3554292_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554288_3555494_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555490_3556351_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556463_3558254_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558294_3558939_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558960_3559269_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559434_3560721_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562154_3563105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565056_3566271_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566376_3567366_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567362_3567971_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567983_3568613_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568609_3569230_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569261_3570053_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570904_3571360_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571378_3572305_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572358_3573645_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574575_3575448_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575444_3576395_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576493_3577444_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013895	Bordetella pertussis strain J152 chromosome, complete genome	4110587	4009655	4074567	4110587	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009655_4010141_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010229_4010367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010359_4011340_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011606_4012416_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012455_4013136_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013129_4013588_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013599_4013962_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4014044_4014728_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014783_4015092_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015110_4015425_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015421_4017896_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017903_4019295_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019291_4019477_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019455_4020157_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020153_4020975_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020955_4022080_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4022072_4023092_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023297_4024188_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024432_4025224_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025306_4025681_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025658_4027068_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4027060_4028443_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028777_4030382_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030459_4031431_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031441_4032368_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486111.1|4032758_4033709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033878_4035105_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035304_4036171_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036163_4037126_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037226_4038177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038275_4039226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039324_4040275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040271_4041765_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041761_4044869_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044865_4047934_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047930_4049181_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049361_4050114_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050155_4050800_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050808_4051789_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051888_4052632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052714_4053062_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053159_4054002_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054046_4054934_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054960_4055149_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055246_4056704_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056690_4058217_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058235_4058703_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058702_4059725_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059845_4060586_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060640_4061741_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061742_4062933_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063052_4064069_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064387_4065059_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065055_4065964_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066175_4066823_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070683_4071751_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071761_4072571_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072660_4073434_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073434_4073599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073616_4074567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
