The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	27282	70036	4106390	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	77634	136108	4106390	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	164894	225405	4106390	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	233337	286925	4106390	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	390858	448367	4106390	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	589372	650565	4106390	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589372_590323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590798_591689_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591685_592507_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592708_593200_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593218_594292_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594338_595442_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595517_596138_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596158_596668_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596722_596974_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597037_598171_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598178_598565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598561_601081_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601509_601848_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601844_602351_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602412_603213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603323_604265_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604358_605894_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607573_609424_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609427_610261_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610260_611202_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611453_612425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612566_614855_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615161_616070_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616124_617090_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617164_618826_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618897_619608_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619756_620707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621405_621789_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621846_622449_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622466_622868_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622983_623895_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623891_624473_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625267_626002_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626042_627092_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627239_627818_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628204_629182_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629275_633670_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633870_634719_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634877_635690_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635745_636696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636794_637595_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637656_638040_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638051_639404_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639691_640021_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640023_640773_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640955_641876_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641922_642135_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642157_642580_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642596_643697_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643793_645311_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645386_646226_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646247_647120_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647210_648305_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648598_649549_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649623_650565_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	655889	702080	4106390	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655889_656915_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656955_657195_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657264_658854_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658853_659402_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659482_660055_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660073_660985_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661058_662027_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662149_663223_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663227_665048_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665124_666075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666163_666499_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666632_667283_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667304_668723_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668792_669548_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669516_670275_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670285_671167_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671183_671891_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671893_672652_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672861_674604_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674596_675121_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675160_675955_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676122_677196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677294_678245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678496_678703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678774_679386_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679940_680192_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680184_680874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681130_682081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682720_683206_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683192_684470_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684472_685891_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685919_686975_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686980_687223_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687345_687948_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688376_689327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690001_690253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690315_690798_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690811_691000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690999_691395_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691391_691790_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691786_692209_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692216_692717_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692971_693490_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693499_693829_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693846_694137_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694162_696775_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696784_697144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697211_697745_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697741_698131_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698123_702080_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	708246	762176	4106390	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708246_709977_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710029_710458_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710460_711141_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711140_711599_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711635_712610_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712626_713943_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713974_714472_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714558_715248_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715247_716297_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716293_717088_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717256_717607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717582_718140_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719269_720220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722357_723587_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723589_725032_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725136_726282_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726313_727111_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727135_728695_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728691_731064_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731173_732277_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732276_732969_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733112_733814_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733798_734176_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_010929591.1|734907_735858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736017_736890_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737230_737449_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737488_738868_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738909_740307_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740346_741999_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742002_742887_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742886_743828_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743906_745526_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745692_746508_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746575_747145_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747145_748096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748750_749848_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749881_751147_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751304_752255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752498_753089_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753104_755549_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755668_756640_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756771_757296_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757255_758206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758427_760623_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760695_761103_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761225_762176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	884765	952741	4106390	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884765_885782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885978_886962_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888560_889949_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889979_890969_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891079_892312_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892593_893394_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893416_895648_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896435_896882_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896903_897650_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897793_898771_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899404_900016_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900009_901227_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901367_902318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902314_903034_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903154_905314_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905404_905674_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905762_905969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905967_906495_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906513_907293_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907460_908477_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908549_909041_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909051_910767_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911930_912881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912877_914710_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915108_915768_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916295_916976_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917257_917974_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917988_919290_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921434_924323_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924546_925899_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925927_926449_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926445_927900_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927934_928183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928288_929164_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929189_930245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930257_931049_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931081_932452_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933628_934579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934631_934853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935012_935225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935344_936463_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936559_936775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936968_937220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937332_938283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938279_938663_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938717_940532_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940681_941509_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941554_942535_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942531_942744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942740_943922_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944085_944820_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944821_947434_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947569_949483_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950098_950509_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950606_951692_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951790_952741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	996270	1068787	4106390	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996270_997221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997325_998375_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998512_999529_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001037_1001610_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001669_1002401_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002452_1003370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004177_1007357_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007353_1008736_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008805_1009057_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009202_1009817_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010003_1012064_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012193_1013045_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013041_1013668_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013664_1015419_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015711_1018417_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018429_1020091_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020103_1021894_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022115_1023291_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023333_1024284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024382_1025123_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025317_1027354_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027371_1028382_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028499_1029693_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029722_1030496_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030492_1031683_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031708_1032647_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032643_1034992_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035146_1035788_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037117_1037270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037301_1037850_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037868_1038354_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038531_1039470_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039472_1039790_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039835_1040780_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042460_1043111_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043164_1043500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043496_1044357_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044373_1044655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044728_1044992_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045235_1046186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046484_1047222_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047657_1047981_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048015_1048576_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048696_1049572_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049584_1050532_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050633_1050927_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050953_1053011_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053025_1053526_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053599_1055306_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056169_1057222_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057274_1057664_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057672_1058305_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058404_1059421_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060251_1061259_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061255_1062899_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062895_1063783_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063923_1064397_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064386_1065409_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065405_1066833_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067770_1068787_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	1072540	1134617	4106390	transposase,tRNA,holin	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1072540_1073677_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073673_1074747_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074904_1076341_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076431_1077073_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|1077409_1078426_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080468_1081419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082621_1084043_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084306_1085023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085107_1085425_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085465_1085879_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085880_1086240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086282_1087827_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087910_1088741_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088775_1089930_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089972_1090845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090961_1093250_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094456_1094921_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094947_1095898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096265_1097042_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097086_1097944_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097965_1098982_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099116_1100157_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100351_1102433_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102668_1104162_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104392_1105187_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105407_1106766_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106762_1107605_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107623_1109510_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109451_1109703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109747_1110380_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110398_1111001_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111152_1112103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112683_1113391_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113749_1114736_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114875_1115889_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115885_1116836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116948_1117407_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117443_1118757_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118774_1119146_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119142_1120606_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120746_1121475_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121456_1124306_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124518_1125469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125636_1126461_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126460_1127339_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128243_1129359_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129387_1130182_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130178_1132044_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132122_1132755_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132751_1133054_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133096_1134617_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	1152188	1218708	4106390	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152188_1153985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153984_1154953_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155022_1155868_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155935_1156490_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156536_1157487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157585_1158218_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158383_1160666_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160820_1163517_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163642_1164131_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166541_1169412_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169457_1170672_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170901_1172329_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172426_1173518_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173530_1174289_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174376_1175279_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175275_1176226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176355_1177339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177393_1178116_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179594_1180950_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181030_1183406_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183570_1185646_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185707_1186502_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186609_1187572_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187559_1188315_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188422_1190060_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190127_1190865_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190967_1191543_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191715_1192252_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192284_1192599_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192614_1193460_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193498_1194878_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194955_1195837_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195935_1196886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196882_1197293_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197400_1198255_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198247_1199210_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199255_1200380_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200485_1201364_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201488_1202268_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202421_1203843_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204277_1205975_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206201_1207143_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207469_1208216_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208223_1209150_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209271_1210189_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210228_1211182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211206_1211785_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213458_1214067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214144_1214498_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214581_1215571_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215773_1216724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216810_1217761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217757_1218708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	1269636	1326847	4106390	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1269636_1270587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274333_1274945_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275167_1276628_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276724_1278317_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278670_1278928_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278929_1280270_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280365_1281055_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281067_1282498_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284222_1285044_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285054_1286626_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286654_1287632_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287658_1288462_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288458_1289253_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289260_1290496_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290509_1290923_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291672_1292623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293244_1294972_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295083_1296442_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296734_1297685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297725_1298796_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298818_1299697_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299868_1300840_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1301002_1301845_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302006_1302687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302680_1303850_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303846_1304878_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304945_1306163_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306197_1307730_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307810_1308434_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308464_1309076_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309111_1309582_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310013_1311018_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311054_1312569_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312572_1313532_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313560_1314364_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314365_1316000_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316083_1317145_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317343_1317613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317616_1318141_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318556_1319507_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319503_1320538_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320646_1321285_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321579_1321807_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321929_1322643_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322887_1323838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323977_1324223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324337_1325786_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325896_1326847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	1417080	1481296	4106390	transposase,tRNA,protease	Salmonella_phage(16.67%)	59	NA	NA
WP_005013747.1|1417080_1418031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418197_1418551_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418563_1418926_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418967_1419393_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419595_1420852_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421050_1422031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422180_1423422_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423520_1424471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424479_1425175_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427996_1428596_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428606_1430772_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430795_1432580_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432579_1432669_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433363_1433636_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433635_1435702_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435698_1436649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436747_1437698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437813_1438146_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438142_1438829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438815_1439775_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439807_1442177_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442176_1442809_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442910_1444251_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444297_1445653_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445943_1446180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446367_1446685_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446957_1447473_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447743_1448499_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448837_1449044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449051_1449711_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450005_1452210_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452320_1453544_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453666_1454641_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454708_1455902_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455916_1456717_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456713_1458570_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458566_1459172_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459190_1460576_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461301_1462528_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462616_1463399_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463497_1464448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464474_1465248_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465259_1466501_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1468317_1469145_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1469146_1469857_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1469853_1470453_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1470561_1471155_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1471206_1471389_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1471445_1472504_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1472503_1473490_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1473571_1474507_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1474508_1475261_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1475443_1475683_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1475872_1477102_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1477103_1477604_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1477600_1478200_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1478212_1478713_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1478712_1479771_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_004566381.1|1479808_1481296_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 15
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	1663763	1722755	4106390	transposase	Enterobacteria_phage(33.33%)	60	NA	NA
WP_010929591.1|1663763_1664714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1664710_1666033_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1666133_1666451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1666584_1667898_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1667928_1669566_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1670189_1670666_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1670967_1671918_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698385.1|1671935_1672079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930833.1|1672261_1672717_+	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_003809869.1|1672752_1673019_-	type III secretion protein	NA	NA	NA	NA	NA
WP_003820040.1|1673008_1673308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930832.1|1673348_1674629_-	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA	NA
WP_010930831.1|1674625_1676725_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_010930830.1|1676721_1677090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930829.1|1677086_1677497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930828.1|1677501_1677879_-	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930827.1|1677875_1678973_-	type III secretion system gatekeeper subunit SctW	NA	NA	NA	NA	NA
WP_003820049.1|1679136_1679754_+	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930826.1|1679775_1680051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568102.1|1680066_1680552_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930825.1|1680599_1681541_+	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_010930824.1|1681564_1682773_+	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_003809889.1|1682796_1683258_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930823.1|1683262_1683784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248576.1|1683780_1684188_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA	NA
WP_010930821.1|1684184_1685009_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_003820059.1|1685001_1685664_+	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930820.1|1685633_1686272_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_003820061.1|1686276_1687611_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
WP_003820063.1|1687610_1688120_+	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_010930819.1|1688116_1688665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930818.1|1688661_1689741_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_004568087.1|1689737_1690409_+	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_010930817.1|1690414_1690681_+	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA	NA
WP_010930816.1|1690692_1691493_+	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_010930815.1|1691489_1692539_+	type III secretion system export apparatus subunit SctU	NA	NA	NA	NA	NA
WP_010930814.1|1692535_1692934_+	type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930813.1|1692924_1694727_+	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA	NA
WP_003809919.1|1694747_1695350_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930812.1|1695524_1696223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995090.1|1696259_1696460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905553.1|1697786_1698974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930809.1|1698970_1700992_-	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_023995091.1|1701076_1703518_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930807.1|1703514_1704678_-	alanine racemase	NA	NA	NA	NA	NA
WP_003809933.1|1704761_1705190_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003820087.1|1705333_1705684_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_010930806.1|1705680_1707138_-	cardiolipin synthetase	NA	NA	NA	NA	NA
WP_010930805.1|1707792_1710504_+	autotransporter BapA	NA	NA	NA	NA	NA
WP_003809939.1|1710762_1711035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930522.1|1711031_1711982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1712080_1713031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_080127480.1|1713129_1715730_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1715836_1716841_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1716949_1718290_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1718330_1719359_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1719554_1720100_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1720096_1720657_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1720755_1721706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1721804_1722755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	1896654	1966306	4106390	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1896654_1899312_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1899389_1900592_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1900588_1901101_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1901223_1901661_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1901937_1902888_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1902986_1903937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1904100_1905996_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1906109_1906277_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1906340_1906577_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1906945_1908097_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1909660_1910611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1911062_1912064_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1912236_1913094_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1913090_1914353_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1914453_1914828_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1914900_1916088_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1916172_1916943_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1917056_1917821_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1917771_1919073_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1919069_1919876_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1921620_1922592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1922748_1923261_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1923419_1924394_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1925394_1926189_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1926214_1927021_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1927131_1927722_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1927732_1928911_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1929013_1929388_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1929640_1930972_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1931038_1934269_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1935759_1936506_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1936590_1937052_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1937089_1938148_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1938110_1939940_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1939979_1940552_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1941976_1942798_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1943116_1944439_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1944798_1945434_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1945393_1946344_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1947214_1948087_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1948164_1949304_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1949662_1950919_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1950924_1951452_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1951456_1952275_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_062810228.1|1952274_1952997_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1953018_1953333_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1953350_1954499_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1954529_1955405_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1955401_1956721_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1956793_1957990_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1958000_1959488_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1962082_1962982_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1963119_1964085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1964183_1965134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1965355_1966306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	1977802	2027198	4106390	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1977802_1978753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1979890_1980187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1980361_1981714_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1981856_1982873_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1984852_1985866_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|1985952_1986858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1987014_1987359_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1987516_1987975_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1987988_1990205_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1990201_1991263_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1991291_1992266_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1992217_1993036_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1993048_1993657_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|1993831_1994227_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1994245_1995685_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1995713_1996061_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1996079_1997030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1997682_1998633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1998716_2000534_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2000607_2001255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2001267_2002197_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2002366_2002831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2003078_2003759_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2003807_2005499_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2005514_2006066_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2006062_2006434_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2006546_2007383_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2007393_2007918_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2008015_2008195_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2008324_2009299_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2009429_2009786_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2009775_2010651_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2010749_2011634_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2011655_2012951_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2013899_2014550_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2014637_2016158_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2016415_2018281_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2019326_2020277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2020294_2020435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2021249_2021609_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2021596_2023033_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2023029_2023683_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2023679_2024873_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2024976_2026251_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2026247_2027198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2038402	2079093	4106390	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2038402_2039353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2039451_2040402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2040361_2040775_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2041059_2041359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2041768_2044051_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2044516_2044711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2044736_2046767_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2046786_2046999_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2047276_2047816_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2047929_2049225_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2049301_2050459_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2050642_2051542_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2051560_2052865_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2052830_2053937_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2054024_2054261_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2054399_2055470_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2055473_2056829_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2056855_2058013_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2058018_2058657_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2058658_2059954_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2060003_2061290_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2061305_2061812_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2061808_2062957_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2062984_2063410_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2063732_2066615_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2066707_2067463_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2068228_2069578_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2069676_2070627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2070725_2071676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2071749_2072223_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2072248_2073457_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2073453_2074227_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2074226_2074850_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2075015_2075276_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2075579_2076161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2076227_2076482_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2076468_2079093_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2216100	2277448	4106390	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2216100_2217051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2217167_2217887_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2218059_2219046_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2219046_2219529_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2219532_2220816_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2220812_2221751_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2221747_2223457_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2223466_2224714_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2226324_2227614_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2228751_2229525_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2230186_2230930_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2231004_2231745_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2231940_2232777_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2232827_2233598_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2233647_2234700_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2234696_2235323_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2235319_2236354_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2236532_2237549_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2237647_2238598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2241338_2242628_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2242746_2243184_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2243227_2244436_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2244582_2245047_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2245070_2246021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2247005_2247779_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2247775_2248774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2248858_2249635_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2249790_2251395_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2251775_2252900_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015039998.1|2253026_2253650_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2253646_2255548_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2255596_2256391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2256403_2257405_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2257401_2257851_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2257900_2258749_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2258846_2259389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2259432_2260383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2260538_2260865_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2260861_2261143_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2261142_2261622_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2261618_2263247_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2263243_2263588_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2263587_2266521_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2267679_2268630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2268728_2269025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2269131_2270049_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2270053_2270767_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2270780_2271752_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2273501_2273852_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2273855_2275043_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2275481_2276204_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2276497_2277448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2298239	2369393	4106390	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2298239_2299190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2299742_2301368_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2301417_2302452_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2302454_2303801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2303797_2305312_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2305302_2306313_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2306786_2307728_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2307736_2308705_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2310244_2311213_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2311390_2312380_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2312426_2313185_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2313374_2314112_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2314210_2315161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2315345_2316128_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2316121_2316823_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2317062_2317665_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2318991_2319942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2319938_2321495_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2321487_2322261_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2322319_2323270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2323351_2324527_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2324540_2326598_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2326594_2327620_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2327631_2328921_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2328943_2330041_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2330037_2330928_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2330924_2333009_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2333040_2334210_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2334251_2334992_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2334991_2335762_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2336617_2337403_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2337429_2339514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2339681_2341637_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2341960_2342461_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2342559_2344086_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2344223_2345111_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2345125_2346079_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2346130_2348221_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2348236_2348623_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2351316_2352120_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2353413_2354316_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2354380_2355157_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2355478_2356528_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2356651_2358322_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2358326_2359121_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2359219_2360170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2360189_2361095_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2361172_2361871_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2362030_2362975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2362984_2364472_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2364471_2365539_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2365602_2367015_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2367200_2368421_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2368442_2369393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2466270	2525051	4106390	transposase,tRNA	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2466270_2468220_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2468607_2469384_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2469389_2469782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2470203_2471154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2471150_2472248_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2472279_2473230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2475011_2476253_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2476264_2477038_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2477064_2478015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478494_2479151_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479165_2480833_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480835_2481465_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481676_2482771_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482915_2483728_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483731_2485315_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485485_2486616_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486802_2487879_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487960_2488611_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488625_2490029_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490312_2491131_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2491127_2491832_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492731_2493847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493880_2494255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494277_2495435_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495447_2495681_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496315_2499285_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499299_2499509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499660_2500290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500286_2502344_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502400_2503081_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503077_2503638_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503644_2504742_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504894_2505488_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505484_2506777_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506790_2507333_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507342_2508179_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508212_2509274_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509315_2510368_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510383_2510686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510827_2511778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2511956_2513651_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513647_2514733_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514780_2515680_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515690_2516335_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517356_2520599_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520609_2521764_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521990_2522953_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523051_2524002_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524100_2525051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2577586	2644086	4106390	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577586_2578537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578906_2579479_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579481_2580492_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580484_2580985_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580995_2581337_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581405_2582140_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582156_2582426_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582448_2583237_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583283_2584300_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584516_2585959_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586137_2587757_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587877_2589698_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589776_2591309_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591342_2592989_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593058_2594081_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594098_2595232_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595234_2595924_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595923_2596709_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596752_2597517_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597555_2598977_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599042_2599747_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599794_2600214_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600226_2600634_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600817_2601528_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601654_2601945_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601962_2602445_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606950_2608105_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608410_2609427_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609673_2610462_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610528_2611209_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611205_2611976_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612074_2613025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613080_2613998_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614008_2615187_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615206_2616202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617790_2618399_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618386_2619427_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619444_2620407_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620403_2621597_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621593_2622391_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622416_2623403_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623421_2625461_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625662_2626343_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626356_2627268_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627264_2627843_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627981_2628887_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628894_2632314_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632301_2634902_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635857_2636490_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636883_2637642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637638_2638841_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639028_2639979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640886_2642032_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642018_2642774_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642890_2643070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643135_2644086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2672201	2709613	4106390	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672201_2673152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673250_2674201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674293_2674833_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674939_2675284_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675341_2676790_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676977_2677313_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678940_2680119_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680201_2680702_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680811_2681513_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681524_2681989_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2682003_2682279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682275_2683052_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683080_2683908_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684033_2684504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684630_2685524_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685571_2686753_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686765_2687581_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687714_2688242_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688238_2688736_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688883_2689261_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689482_2690433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690531_2691143_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691377_2692505_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692615_2693704_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693756_2694608_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694627_2695509_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695685_2696999_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697209_2698043_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698039_2698621_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698974_2699925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699940_2701056_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701158_2702085_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702084_2703323_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703319_2704087_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704087_2704789_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704870_2705317_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2706206_2706845_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707613_2708564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708662_2709613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2808740	2871184	4106390	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	55	NA	NA
WP_023853639.1|2808740_2809691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810019_2810625_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810678_2811992_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812066_2812537_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812536_2813325_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813335_2814988_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815075_2816026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817187_2817694_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817690_2818455_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818470_2818755_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818819_2819809_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819980_2820910_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820881_2821568_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821601_2822147_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822191_2823457_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823453_2824356_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825537_2826482_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826576_2828094_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828135_2829764_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829871_2830753_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833865_2834240_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834264_2834603_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834646_2836281_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836319_2837666_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837773_2839195_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839264_2839849_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839951_2840902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841036_2842143_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842153_2843251_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843395_2844601_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844607_2845129_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845125_2845608_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845613_2845865_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845845_2846331_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846466_2849928_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849945_2850830_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850839_2851271_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851517_2852021_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852098_2853499_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853573_2854449_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854445_2855453_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855920_2856226_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856316_2856907_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857097_2858114_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858305_2860642_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860724_2861159_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2861257_2862208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862204_2862999_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863030_2863735_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863809_2864610_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864606_2865014_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865010_2865652_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865644_2867645_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868905_2870237_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870233_2871184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2885660	2927019	4106390	transposase,protease	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
WP_010930800.1|2885660_2886611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886941_2890763_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890919_2891588_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891592_2893266_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893284_2894604_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894608_2896924_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896979_2899148_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899144_2904325_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904423_2904738_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904965_2905211_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905305_2905824_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905923_2907129_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907244_2908642_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908758_2909337_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909409_2910801_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910968_2911919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912199_2912820_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912816_2913230_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913226_2914270_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914325_2914514_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914523_2915288_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915378_2916035_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916126_2916885_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916910_2918512_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918712_2919717_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919817_2920081_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920198_2920975_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921565_2922516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924899_2926012_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926068_2927019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	2957405	3011636	4106390	transposase	Planktothrix_phage(16.67%)	48	NA	NA
WP_005012067.1|2957405_2958356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958476_2959373_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961650_2963876_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964040_2965129_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965085_2965739_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965786_2966584_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967115_2968066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968146_2969295_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969351_2970302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970400_2970706_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970734_2971169_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971170_2972415_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972411_2973122_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973136_2974048_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974410_2974815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974811_2975270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975276_2976185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976181_2977048_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977034_2977862_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977872_2979000_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980077_2981316_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981357_2982620_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982626_2983379_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983430_2983616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983891_2984356_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984387_2985047_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985191_2987300_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987296_2988247_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988350_2988971_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989074_2989815_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990949_2992074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992119_2992488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992729_2993680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994715_2995258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995643_2996594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996590_2997499_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997625_2998462_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998974_3000084_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000145_3001096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3001288_3002071_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3002084_3002849_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3002861_3004208_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3004233_3005163_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3005278_3006184_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3006201_3007401_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3007473_3008166_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3008214_3010641_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3010685_3011636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	3381042	3434783	4106390	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381042_3381993_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382397_3383042_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383066_3383651_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383751_3384369_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384371_3386087_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386083_3386392_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386408_3387026_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387070_3387373_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387473_3388328_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388515_3388740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388909_3389182_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389599_3390007_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390376_3391171_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391271_3392507_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392575_3393592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393603_3394980_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394976_3396173_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396169_3397708_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397704_3398964_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400904_3401855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402621_3403716_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403708_3405043_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404996_3405680_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405705_3406869_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406865_3407867_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407866_3408739_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408735_3409485_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409481_3410273_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410269_3411409_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411684_3412470_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412503_3413286_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413289_3413679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414818_3415682_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415717_3416806_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416802_3417753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418106_3421085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422011_3422890_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424838_3425789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425785_3426253_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426295_3427066_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427086_3427887_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427897_3429307_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429401_3430187_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430426_3431443_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431550_3431943_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432080_3432761_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432765_3433737_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433832_3434783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	3440938	3516125	4106390	transposase,tRNA	Acinetobacter_phage(25.0%)	60	NA	NA
WP_003820957.1|3440938_3442702_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442813_3443692_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443804_3444620_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444623_3444875_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444959_3445976_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446306_3446528_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448888_3449806_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450303_3451512_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451591_3453163_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453280_3454216_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454404_3455349_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455916_3461634_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461639_3462767_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462822_3463449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463720_3464737_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464832_3465543_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465539_3466529_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466624_3468256_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468258_3468996_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469151_3470024_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470373_3471513_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471509_3472169_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472240_3472873_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472902_3473421_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473431_3474541_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474587_3475442_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475443_3476346_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477568_3478519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481438_3482227_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482223_3483255_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483273_3483837_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483892_3485413_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485676_3486381_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486388_3487117_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487231_3487606_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487648_3488938_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488934_3490104_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490100_3490940_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490999_3491935_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491947_3492898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492996_3493959_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493990_3494350_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494474_3495377_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495378_3497151_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497185_3497962_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499285_3500236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3501087_3501408_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3501480_3502362_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3502478_3502721_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3502858_3503329_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3503341_3503881_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3503915_3505457_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3505555_3506461_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3506503_3507904_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3507913_3508336_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3508518_3509403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3509478_3510555_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3510861_3512964_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3513006_3515076_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3515174_3516125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	3533243	3587044	4106390	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3533243_3534194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534534_3535485_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535583_3536534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536830_3537328_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537370_3539146_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539153_3540020_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540026_3540761_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541930_3542725_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543014_3543605_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543638_3544967_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545041_3546187_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546298_3547297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547259_3547694_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549210_3550095_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550091_3551297_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551293_3552154_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552266_3554057_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554097_3554742_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554763_3555072_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555237_3556524_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557957_3558908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560859_3562074_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562179_3563169_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563165_3563774_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563786_3564416_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564412_3565033_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565064_3565856_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566707_3567163_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567181_3568108_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568161_3569448_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570378_3571251_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571247_3572198_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572296_3573247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3573351_3573582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3573708_3574098_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3574114_3576496_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3576488_3577865_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3577880_3578876_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3578894_3579887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3580127_3580688_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3580692_3581019_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3581055_3581868_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3581878_3582961_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3583047_3584322_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3585044_3585995_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3586093_3587044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013901	Bordetella pertussis strain J175 chromosome, complete genome	4106390	4005458	4070370	4106390	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005458_4005944_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006032_4006170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006162_4007143_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007409_4008219_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008258_4008939_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008932_4009391_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009402_4009765_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009847_4010531_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010586_4010895_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010913_4011228_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011224_4013699_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013706_4015098_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015094_4015280_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015258_4015960_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015956_4016778_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016758_4017883_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017875_4018895_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019100_4019991_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020235_4021027_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021109_4021484_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021461_4022871_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022863_4024246_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024580_4026185_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026262_4027234_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027244_4028171_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028561_4029512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029681_4030908_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031107_4031974_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031966_4032929_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033029_4033980_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034078_4035029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035127_4036078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036074_4037568_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037564_4040672_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040668_4043737_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043733_4044984_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045164_4045917_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045958_4046603_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046611_4047592_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047691_4048435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048517_4048865_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048962_4049805_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049849_4050737_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050763_4050952_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051049_4052507_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052493_4054020_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054038_4054506_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054505_4055528_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055648_4056389_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056443_4057544_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057545_4058736_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058855_4059872_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060190_4060862_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060858_4061767_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061978_4062626_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066486_4067554_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067564_4068374_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068463_4069237_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069419_4070370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
