assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002076955.1_ASM207695v1	NZ_CP020464	Lactobacillus rhamnosus strain Pen chromosome, complete genome	1	905323-906415	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	csa3,cas3,WYL,cas14j,cas9,cas1,cas2,csn2,DEDDh,DinG	Type II-A,Type II-C,Type II-B	GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC,GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC,GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	15,16,16	16	TypeII-A,TypeII-C,TypeII-B	csa3,cas3,WYL,cas14j,cas9,cas1,cas2,csn2,DEDDh,DinG	NA,NA|367aa|down_1|NZ_CP020464.1_907159_908260_+	NA|340aa|up_9|NZ_CP020464.1_890327_891347_-	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|435aa|up_8|NZ_CP020464.1_891447_892752_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|475aa|up_7|NZ_CP020464.1_892983_894408_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|338aa|up_6|NZ_CP020464.1_894404_895418_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|581aa|up_5|NZ_CP020464.1_895414_897157_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|576aa|up_4|NZ_CP020464.1_897137_898865_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	cas9|1362aa|up_3|NZ_CP020464.1_899159_903245_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP020464.1_903436_904342_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP020464.1_904319_904625_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|227aa|up_0|NZ_CP020464.1_904621_905302_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|163aa|down_0|NZ_CP020464.1_906463_906952_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|367aa|down_1|NZ_CP020464.1_907159_908260_+	NA	NA|142aa|down_2|NZ_CP020464.1_908444_908870_+	pfam07009, NusG_II, NusG domain II	NA|565aa|down_3|NZ_CP020464.1_909081_910776_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|541aa|down_4|NZ_CP020464.1_910768_912391_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|291aa|down_5|NZ_CP020464.1_912522_913395_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|612aa|down_6|NZ_CP020464.1_913843_915679_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|483aa|down_7|NZ_CP020464.1_915697_917146_+	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|262aa|down_8|NZ_CP020464.1_917605_918391_+	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|215aa|down_9|NZ_CP020464.1_918456_919101_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein
GCF_002076955.1_ASM207695v1	NZ_CP020464	Lactobacillus rhamnosus strain Pen chromosome, complete genome	2	1823579-1823693	2	CRISPRCasFinder	no		csa3,cas3,WYL,cas14j,cas9,cas1,cas2,csn2,DEDDh,DinG	Orphan	GCGTTATGGGCATAAGCTAGAATGTAAG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas14j,cas9,cas1,cas2,csn2,DEDDh,DinG	NA,NA|100aa|down_1|NZ_CP020464.1_1824497_1824797_-,NA|151aa|down_2|NZ_CP020464.1_1824819_1825272_-	NA|390aa|up_9|NZ_CP020464.1_1811062_1812232_-	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|615aa|up_8|NZ_CP020464.1_1812477_1814322_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|265aa|up_7|NZ_CP020464.1_1814574_1815369_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|94aa|up_6|NZ_CP020464.1_1815371_1815653_-	pfam05256, UPF0223, Uncharacterized protein family (UPF0223)	NA|297aa|up_5|NZ_CP020464.1_1815642_1816533_-	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]	NA|468aa|up_4|NZ_CP020464.1_1816778_1818182_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|552aa|up_3|NZ_CP020464.1_1818184_1819840_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|326aa|up_2|NZ_CP020464.1_1819857_1820835_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|up_1|NZ_CP020464.1_1820837_1821950_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|272aa|up_0|NZ_CP020464.1_1822210_1823026_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|185aa|down_0|NZ_CP020464.1_1823901_1824456_+	PRK00150, def, peptide deformylase; Reviewed	NA|100aa|down_1|NZ_CP020464.1_1824497_1824797_-	NA	NA|151aa|down_2|NZ_CP020464.1_1824819_1825272_-	NA	NA|71aa|down_3|NZ_CP020464.1_1825766_1825979_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|561aa|down_4|NZ_CP020464.1_1825983_1827666_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|317aa|down_5|NZ_CP020464.1_1827917_1828868_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|406aa|down_6|NZ_CP020464.1_1828996_1830214_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|822aa|down_7|NZ_CP020464.1_1830219_1832685_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|224aa|down_8|NZ_CP020464.1_1832671_1833343_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|221aa|down_9|NZ_CP020464.1_1833388_1834051_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_002076955.1_ASM207695v1	NZ_CP020464	Lactobacillus rhamnosus strain Pen chromosome, complete genome	3	1943080-1943231	3	CRISPRCasFinder	no		csa3,cas3,WYL,cas14j,cas9,cas1,cas2,csn2,DEDDh,DinG	Orphan	GAACGCGTTATGGGCGTAAAGGCGGACTTGTGGCCTTGGGCGTGATGGCCC	51	1	1	1943131-1943180	NZ_CP020464.1_1823525-1823574	NA	1	1	Orphan	csa3,cas3,WYL,cas14j,cas9,cas1,cas2,csn2,DEDDh,DinG	NA|61aa|up_8|NZ_CP020464.1_1934554_1934737_-,NA|51aa|down_9|NZ_CP020464.1_1949809_1949962_-	NA|127aa|up_9|NZ_CP020464.1_1933839_1934220_-	pfam07997, DUF1694, Protein of unknown function (DUF1694)	NA|61aa|up_8|NZ_CP020464.1_1934554_1934737_-	NA	NA|479aa|up_7|NZ_CP020464.1_1934979_1936416_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|149aa|up_6|NZ_CP020464.1_1936408_1936855_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|399aa|up_5|NZ_CP020464.1_1936841_1938038_-	cd06453, SufS_like, Cysteine desulfurase (SufS)-like	NA|344aa|up_4|NZ_CP020464.1_1938030_1939062_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|256aa|up_3|NZ_CP020464.1_1939054_1939822_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|230aa|up_2|NZ_CP020464.1_1940002_1940692_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|351aa|up_1|NZ_CP020464.1_1940696_1941749_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|277aa|up_0|NZ_CP020464.1_1941767_1942598_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|276aa|down_0|NZ_CP020464.1_1943547_1944375_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|375aa|down_1|NZ_CP020464.1_1944876_1946001_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|100aa|down_2|NZ_CP020464.1_1946130_1946430_-	cd06848, GCS_H, Glycine cleavage H-protein	NA|402aa|down_3|NZ_CP020464.1_1946441_1947647_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|74aa|down_4|NZ_CP020464.1_1947768_1947990_-	pfam11184, DUF2969, Protein of unknown function (DUF2969)	NA|102aa|down_5|NZ_CP020464.1_1947982_1948288_-	PRK14379, PRK14379, membrane protein insertion efficiency factor YidD	NA|57aa|down_6|NZ_CP020464.1_1948296_1948467_-	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta	NA|330aa|down_7|NZ_CP020464.1_1948479_1949469_-	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional	NA|79aa|down_8|NZ_CP020464.1_1949533_1949770_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|51aa|down_9|NZ_CP020464.1_1949809_1949962_-	NA
