The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	378224	399881	2381789	integrase	Lactococcus_phage(50.0%)	32	370095:370114	407651:407670
370095:370114	attL	AAATAAAAAGTTACTGACAG	NA	NA	NA	NA
WP_003131595.1|378224_378542_+	thioredoxin	NA	A0A0K2FIM3	Achromobacter_phage	30.4	4.5e-05
WP_003131594.1|378627_379254_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_023188995.1|379416_380757_+	NADH oxidase	NA	NA	NA	NA	NA
WP_081199217.1|380845_381235_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.0	1.8e-24
WP_003131589.1|381354_381639_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
WP_003131585.1|381727_383356_+	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
WP_003131583.1|383401_384214_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	3.1e-34
WP_012897229.1|384382_385825_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
WP_003131580.1|385817_386519_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_012897230.1|386696_387332_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	65.0	5.4e-74
WP_081199219.1|387464_388325_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.5	1.6e-65
WP_023188991.1|388376_389159_+	Signal peptidase-like protein	NA	NA	NA	NA	NA
WP_011675472.1|389151_389478_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_003131568.1|389477_390353_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	8.7e-99
WP_012897234.1|390429_390621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081199221.1|391219_391405_-	hypothetical protein	NA	A5GZ68	Lactococcus_phage	86.5	2.4e-19
WP_081199223.1|391948_392281_-	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	69.4	2.1e-37
WP_058225857.1|392280_392592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081199225.1|392769_393369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081199227.1|393355_393670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081199229.1|393962_394703_-	hypothetical protein	NA	A0A1P8BLT1	Lactococcus_phage	41.7	5.3e-41
WP_081199231.1|394702_395440_-	hypothetical protein	NA	A0A1P8BKE9	Lactococcus_phage	95.6	5.1e-68
WP_023163763.1|395452_395779_-	HTH domain-containing protein	NA	Q9AZE7	Lactococcus_phage	88.9	5.2e-49
WP_081199233.1|395765_396029_-	hypothetical protein	NA	Q9AZE9	Lactococcus_phage	75.9	6.1e-32
WP_081200226.1|396025_396214_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	64.5	1.4e-14
WP_054247183.1|396280_396523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023163767.1|396548_396818_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	59.6	1.3e-18
WP_081199235.1|396814_397333_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	45.5	2.6e-18
WP_023163769.1|397337_397532_-	DUF1655 domain-containing protein	NA	Q9AZJ4	Lactococcus_phage	96.9	5.1e-28
WP_081199236.1|397676_397856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081200228.1|398000_398615_+	XRE family transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	34.7	6.4e-08
WP_081199238.1|398681_399881_+|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	79.7	3.3e-181
407651:407670	attR	CTGTCAGTAACTTTTTATTT	NA	NA	NA	NA
>prophage 2
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	978553	1002004	2381789		Staphylococcus_phage(21.43%)	21	NA	NA
WP_003130964.1|978553_979246_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	2.7e-31
WP_012897609.1|979238_980174_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012897610.1|980275_981253_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.0	1.9e-118
WP_017864416.1|981601_983770_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.1	2.3e-257
WP_003130968.1|983905_984328_-	protein NrdI	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
WP_012897612.1|984329_984548_-	NrdH-redoxin	NA	C3U2K9	Lactococcus_phage	47.6	7.6e-12
WP_012897613.1|984721_985360_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_012897614.1|985634_987569_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.5	1.1e-125
WP_003130976.1|988306_989140_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
WP_003130977.1|989136_989586_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003130980.1|989860_992335_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.2	4.2e-98
WP_003130981.1|992360_993266_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_012897616.1|993734_994823_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.8	1.9e-50
WP_012897617.1|994822_995473_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.1	9.4e-42
WP_023164048.1|995481_996678_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.3	2.7e-111
WP_003130993.1|996705_997170_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.7	1.8e-39
WP_003130994.1|997272_997725_+	signal peptidase II	NA	NA	NA	NA	NA
WP_003130995.1|997785_998691_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
WP_012897621.1|998839_999283_+	acid phosphatase	NA	NA	NA	NA	NA
WP_081199515.1|999422_1001045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081199517.1|1001047_1002004_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	37.5	5.3e-49
>prophage 3
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1265261	1273093	2381789		Lactobacillus_phage(42.86%)	8	NA	NA
WP_082225075.1|1265261_1266473_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	57.4	7.9e-58
WP_011915229.1|1266526_1267132_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	52.7	8.8e-50
WP_082225076.1|1267147_1268071_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_081199722.1|1268250_1269303_-	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	39.7	8.1e-59
WP_081199724.1|1269365_1269845_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1D3SPR3	Enterococcus_phage	47.4	1.0e-32
WP_058220898.1|1269828_1270383_-	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	41.9	1.5e-27
WP_081199726.1|1270385_1271036_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	49.1	6.3e-54
WP_004257908.1|1272355_1273093_-	aquaporin family protein	NA	M1HQW3	Paramecium_bursaria_Chlorella_virus	28.8	2.2e-23
>prophage 4
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1542209	1552511	2381789		Synechococcus_phage(33.33%)	7	NA	NA
WP_058208502.1|1542209_1543766_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	45.6	8.0e-71
WP_081199871.1|1543941_1544484_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	31.5	2.3e-09
WP_081199873.1|1545788_1546319_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_081199874.1|1546369_1547959_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	34.1	1.1e-11
WP_012898139.1|1548125_1548674_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.7	7.2e-19
WP_058223469.1|1548702_1549719_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	41.8	6.4e-61
WP_023164311.1|1549907_1552511_-	chaperone protein ClpB	NA	K4FB40	Cronobacter_phage	33.1	1.1e-125
>prophage 5
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1643100	1655363	2381789	integrase	Lactococcus_phage(60.0%)	17	1638684:1638701	1651832:1651849
1638684:1638701	attL	TTATCCATGAGATCCATG	NA	NA	NA	NA
WP_058211228.1|1643100_1643535_-	hypothetical protein	NA	A0A182BQ77	Lactococcus_phage	69.8	6.5e-31
WP_017864808.1|1644102_1644552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017864809.1|1644956_1645361_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	50.4	2.2e-28
WP_081199920.1|1645452_1646013_-	hydrolase	NA	Q38323	Lactococcus_phage	75.2	6.0e-53
WP_081199922.1|1646051_1646372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042749062.1|1646486_1646717_-	hypothetical protein	NA	Q77NT7	Lactococcus_phage	98.7	2.0e-34
WP_082225082.1|1646848_1647103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017865020.1|1647099_1647303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081199926.1|1647457_1647817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081199928.1|1648173_1648698_+	helix-turn-helix domain-containing protein	NA	A0A1B1IMU5	Lactococcus_phage	82.4	5.4e-48
WP_081199930.1|1648708_1649296_+	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	83.9	1.5e-91
WP_058217137.1|1649297_1649612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081199932.1|1649667_1650444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081199934.1|1650573_1651713_+|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	96.0	1.6e-206
WP_015426754.1|1651818_1652892_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.3	2.0e-60
1651832:1651849	attR	TTATCCATGAGATCCATG	NA	NA	NA	NA
WP_081199936.1|1652954_1653887_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	30.8	4.4e-24
WP_010906053.1|1654070_1655363_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.9	1.6e-61
>prophage 6
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1695681	1700492	2381789	holin	Lactococcus_phage(100.0%)	10	NA	NA
WP_081199951.1|1695681_1696536_-	lysozyme	NA	Q8LTJ6	Lactococcus_phage	89.2	5.1e-104
WP_081199952.1|1696537_1696990_-|holin	phage holin	holin	Q8LTJ7	Lactococcus_phage	93.5	2.3e-47
WP_081199955.1|1697031_1697436_-	DUF722 domain-containing protein	NA	A0A1P8BLK0	Lactococcus_phage	100.0	5.6e-69
WP_082225083.1|1697511_1697889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058208107.1|1697890_1698193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058223120.1|1698655_1698865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081199959.1|1699014_1699200_-	hypothetical protein	NA	R9QMC5	Lactococcus_phage	83.6	4.0e-22
WP_081199961.1|1699234_1699726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081199963.1|1699996_1700278_-	hypothetical protein	NA	A0A1B1IM06	Lactococcus_phage	95.6	2.8e-43
WP_081199964.1|1700261_1700492_-	hypothetical protein	NA	A0A1B1IMQ7	Lactococcus_phage	89.7	3.3e-34
>prophage 7
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1795425	1805283	2381789	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
WP_003130886.1|1795425_1796187_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
WP_081200002.1|1796352_1797162_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
WP_003130884.1|1797195_1798089_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
WP_021722156.1|1798088_1799012_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_017864882.1|1799132_1799984_-	phosphate ABC transporter substrate-binding protein	NA	E3SNT9	Prochlorococcus_phage	27.3	4.2e-05
WP_081200004.1|1800330_1801227_-	phosphate ABC transporter substrate-binding protein	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
WP_003130878.1|1801503_1801971_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
WP_081200006.1|1802002_1802578_-	esterase	NA	NA	NA	NA	NA
WP_081200008.1|1802664_1805283_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.3	1.9e-64
>prophage 8
NZ_CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	2287840	2300464	2381789	capsid	Lactococcus_phage(80.0%)	20	NA	NA
WP_023163769.1|2287840_2288035_+	DUF1655 domain-containing protein	NA	Q9AZJ4	Lactococcus_phage	96.9	5.1e-28
WP_081200172.1|2288038_2288563_+	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	74.1	3.4e-66
WP_058208546.1|2288559_2288712_+	hypothetical protein	NA	Q9AZH4	Lactococcus_phage	91.8	4.6e-16
WP_058208545.1|2288708_2288990_+	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	94.6	5.1e-45
WP_081200174.1|2289033_2289273_+	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	92.4	2.8e-36
WP_058208543.1|2289269_2289524_+	hypothetical protein	NA	Q9AZE9	Lactococcus_phage	88.0	7.9e-37
WP_058208542.1|2289520_2289832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081200176.1|2289828_2290155_+	hypothetical protein	NA	Q9AZE7	Lactococcus_phage	68.5	1.5e-35
WP_058208540.1|2290167_2290962_+	hypothetical protein	NA	Q9AZI6	Lactococcus_phage	92.8	2.5e-145
WP_058208539.1|2290972_2292607_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	89.3	4.2e-288
WP_081200178.1|2292961_2294191_+|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	62.1	2.6e-141
WP_081200180.1|2294209_2294830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032398806.1|2294918_2295251_+	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	85.2	5.5e-46
WP_081200285.1|2295355_2295691_+	sigma-70 family RNA polymerase sigma factor	NA	Q9AZD9	Lactococcus_phage	70.3	5.9e-32
WP_081200182.1|2295681_2296179_+	HNH endonuclease	NA	Q9AZT3	Lactococcus_phage	69.0	2.4e-61
WP_003131983.1|2296869_2297070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003131984.1|2297128_2298469_-	type I glutamate--ammonia ligase	NA	A0A2P1EM84	Moumouvirus	23.7	1.8e-10
WP_003131985.1|2298530_2298896_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010906378.1|2298996_2299434_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_021723261.1|2299846_2300464_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	3.4e-09
