The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	87242	137754	2453581	integrase,transposase,protease,tRNA,bacteriocin	Bacillus_phage(33.33%)	49	88255:88273	141251:141269
WP_011675157.1|87242_87698_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_011675158.1|87690_88695_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
88255:88273	attL	GCACTGACAGAAGAAATTA	NA	NA	NA	NA
WP_011675159.1|88697_89321_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_011675160.1|89454_90852_+	amino acid permease	NA	NA	NA	NA	NA
WP_011675161.1|91021_91663_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_014571848.1|91693_92212_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_081175717.1|92369_93014_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_011675163.1|93188_95786_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_011675164.1|95915_96953_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	35.5	2.7e-46
WP_011675165.1|97201_97468_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_011675166.1|97470_99198_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_011675167.1|99372_99681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675168.1|99770_100070_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_063284022.1|100150_101308_-|integrase	site-specific integrase	integrase	A0A0S2GLI2	Bacillus_phage	26.9	3.8e-25
WP_063284021.1|101304_101559_-	DUF3173 family protein	NA	NA	NA	NA	NA
WP_063284020.1|101539_102160_-	Replication protein RepB	NA	NA	NA	NA	NA
WP_063284019.1|102326_102932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063284018.1|102928_103960_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_063284017.1|104010_104331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063284016.1|104595_104784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063284015.1|104776_105394_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
WP_063284014.1|105416_105905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063284013.1|106463_107150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063284012.1|107146_110458_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_063284011.1|110454_111471_+	hypothetical protein	NA	A0A1V0SF57	Hokovirus	27.5	2.9e-29
WP_063284023.1|111560_112022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063284010.1|112018_112843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063284009.1|112843_114001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675169.1|114304_114592_+	serine hydroxymethyltransferase	NA	NA	NA	NA	NA
WP_011675170.1|114871_115807_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011675172.1|116574_117357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675173.1|117542_117863_+	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_011675174.1|117985_119149_+	MFS transporter	NA	NA	NA	NA	NA
WP_152023925.1|119531_120633_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.9	1.9e-34
WP_011675534.1|120718_121894_+|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
WP_011675177.1|122933_124169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152023924.1|124759_125871_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.8	7.2e-50
WP_011675181.1|128015_129209_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_011675182.1|129237_130617_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_011675183.1|130633_131830_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_011675184.1|132023_132599_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_031286668.1|132740_133109_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_011675186.1|133105_133915_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_011675187.1|134002_134917_+	protein jag	NA	NA	NA	NA	NA
WP_003131818.1|135048_135183_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_011675188.1|135360_136272_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_011675189.1|136341_136656_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011675190.1|136832_136991_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_011675191.1|137073_137754_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
141251:141269	attR	TAATTTCTTCTGTCAGTGC	NA	NA	NA	NA
>prophage 2
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	293798	303708	2453581	integrase	Lactococcus_phage(90.91%)	14	293678:293701	304862:304885
293678:293701	attL	CAACAAAATGATGTAATTTCTTAT	NA	NA	NA	NA
WP_080513938.1|293798_295028_-|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	57.4	3.6e-127
WP_011675321.1|295087_295765_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011675322.1|295920_296151_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011675323.1|296367_297036_+	phage-encoded protein	NA	NA	NA	NA	NA
WP_011675324.1|297134_297305_+	DUF1655 domain-containing protein	NA	Q9AZH6	Lactococcus_phage	94.6	5.1e-24
WP_011675325.1|297306_297561_+	hypothetical protein	NA	Q9AZH5	Lactococcus_phage	91.3	7.7e-16
WP_011675327.1|297706_297976_+	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	95.5	2.0e-38
WP_011675328.1|297986_299684_+	hypothetical protein	NA	Q9AZH2	Lactococcus_phage	98.4	3.7e-247
WP_003132807.1|300045_300228_+	hypothetical protein	NA	Q9AZH0	Lactococcus_phage	98.3	5.3e-27
WP_011675329.1|300246_300453_+	hypothetical protein	NA	Q9AZG9	Lactococcus_phage	98.5	2.8e-32
WP_011675330.1|300614_301187_+	hypothetical protein	NA	Q9AZG7	Lactococcus_phage	96.8	1.3e-95
WP_011675331.1|301202_301565_+	hypothetical protein	NA	Q9AZG6	Lactococcus_phage	95.0	1.0e-53
WP_011675333.1|302118_302349_+	hypothetical protein	NA	A0A1P8BME4	Lactococcus_phage	92.1	3.6e-36
WP_041167514.1|302574_303708_+	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	26.8	9.7e-18
304862:304885	attR	CAACAAAATGATGTAATTTCTTAT	NA	NA	NA	NA
>prophage 3
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	424228	436385	2453581	tRNA	uncultured_virus(30.0%)	14	NA	NA
WP_011675460.1|424228_424546_+	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	31.9	9.0e-06
WP_011675461.1|424651_425278_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_011675462.1|425439_426780_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011675463.1|426870_427260_+	single-stranded DNA-binding protein	NA	A0A218MNB4	uncultured_virus	45.7	2.9e-22
WP_011675464.1|427378_427663_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	43.0	2.3e-13
WP_011675465.1|427749_429378_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	2.2e-156
WP_011675466.1|429429_430242_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	1.5e-33
WP_011675468.1|430431_431859_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	32.9	3.9e-32
WP_003131580.1|431851_432553_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_011675469.1|432730_433366_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	66.0	2.7e-73
WP_011675470.1|433498_434359_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.8	3.1e-64
WP_011675471.1|434408_435191_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_011675472.1|435183_435510_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_011675473.1|435509_436385_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	66.1	1.6e-100
>prophage 4
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	566885	694497	2453581	integrase,transposase,protease,tRNA,bacteriocin	Bacillus_phage(27.27%)	114	558407:558421	630190:630204
558407:558421	attL	ATAAATCTATTGCTT	NA	NA	NA	NA
WP_152023927.1|566885_567997_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.8	7.2e-50
WP_014573063.1|568262_569045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675588.1|569251_569569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675589.1|570641_571256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675590.1|571273_572317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014573057.1|572322_572532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675592.1|572591_573716_+|integrase	site-specific integrase	integrase	A0A1S5SA77	Streptococcus_phage	29.1	3.9e-35
WP_011675593.1|573885_574455_+	thymidine kinase	NA	A0A1W6JJU6	Lactococcus_phage	53.7	1.3e-50
WP_011675594.1|574465_574909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675595.1|574926_576000_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_011675596.1|575999_576527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675598.1|576596_577352_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
WP_011675599.1|577456_578272_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_011675600.1|578302_578767_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011675601.1|578763_579684_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	32.8	2.2e-20
WP_011675602.1|579916_581164_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	54.3	8.3e-103
WP_011675603.1|581344_581947_+	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	38.2	2.0e-22
WP_011675604.1|582073_583171_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	61.4	1.9e-127
WP_011675605.1|583167_584364_+	3-phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	51.8	2.8e-116
WP_011675606.1|584409_585072_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_011675742.1|585108_585402_-	acylphosphatase	NA	NA	NA	NA	NA
WP_011675743.1|585513_586272_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_011675744.1|586483_586873_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011675746.1|587178_587526_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011675747.1|587539_587866_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_011675748.1|588041_588485_-	flavodoxin	NA	A7KUZ7	Bacillus_phage	32.5	3.2e-09
WP_011675750.1|590309_590939_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011675751.1|591218_592073_+	methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_011675752.1|592095_593001_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_011675753.1|593103_593550_-	GtrA family protein	NA	NA	NA	NA	NA
WP_011675755.1|594458_594734_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_011675756.1|594836_595013_+	DUF3272 family protein	NA	NA	NA	NA	NA
WP_011675757.1|595145_596078_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_011675758.1|596139_596925_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_011675759.1|597091_597511_+	DUF948 domain-containing protein	NA	NA	NA	NA	NA
WP_011675760.1|597540_598101_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_011675761.1|598234_599653_+	NADP-dependent phosphogluconate dehydrogenase	NA	E3SJC4	Synechococcus_phage	33.0	8.4e-35
WP_011675762.1|599834_601856_+	potassium transporter Kup	NA	A7K9V6	Acanthocystis_turfacea_chlorella_virus	34.1	1.1e-64
WP_011675763.1|602070_604086_+	potassium transporter Kup	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	31.8	2.6e-58
WP_011675764.1|604138_604309_-	DUF3042 family protein	NA	NA	NA	NA	NA
WP_011675765.1|604503_605169_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	29.8	2.3e-19
WP_011675766.1|605300_606185_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_011675767.1|606330_606999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675768.1|607163_608066_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	35.2	1.8e-35
WP_021213677.1|608314_608980_-	hypothetical protein	NA	A0A1P8BMN5	Lactococcus_phage	56.9	3.2e-13
WP_011675770.1|609439_609787_-	XRE family transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	75.4	1.6e-43
WP_011675771.1|610551_611475_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_011675772.1|611467_612169_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011675773.1|612341_614570_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.1	8.7e-79
WP_011675774.1|614693_615206_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.0	4.1e-32
WP_011675775.1|615396_615960_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_011675776.1|616095_617736_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_011675777.1|617796_618267_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_101961467.1|618358_619733_+|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.3	1.3e-53
WP_152023928.1|619788_620936_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	1.7e-46
WP_011675608.1|621182_621638_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011675609.1|621627_624078_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	34.0	1.3e-123
WP_011675610.1|624212_624770_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010905473.1|624957_626259_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
WP_011675611.1|626346_627282_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	27.8	3.0e-25
WP_011675613.1|627554_628322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675614.1|628433_628631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675534.1|628627_629803_-|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
WP_011675617.1|630999_631176_+	hypothetical protein	NA	NA	NA	NA	NA
630190:630204	attR	AAGCAATAGATTTAT	NA	NA	NA	NA
WP_011675618.1|631213_632482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675620.1|633214_634105_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_080513946.1|634241_634343_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152023929.1|634568_635679_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.0	2.3e-48
WP_011675623.1|635736_636462_+	abortive phage infection protein	NA	NA	NA	NA	NA
WP_011675624.1|637090_638089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152023927.1|638331_639443_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.8	7.2e-50
WP_011675626.1|639775_640447_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	7.2e-29
WP_011675627.1|640448_641522_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011675628.1|641533_642103_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011675629.1|642289_643813_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_041167523.1|644059_644923_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_011675631.1|645183_647547_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	31.8	1.0e-106
WP_011675632.1|647777_648437_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_011675633.1|648439_649657_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003129585.1|649653_649800_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011675634.1|650177_651440_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_011675635.1|651544_654958_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_081175738.1|656404_658951_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_011675636.1|658970_660209_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_011675637.1|660248_660848_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	52.6	9.3e-52
WP_011675638.1|661044_661575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003129597.1|661744_662143_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_011675640.1|662443_663607_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011675534.1|663663_664839_-|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
WP_088792927.1|667992_669103_+|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_011675642.1|669524_670415_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_050748320.1|670728_671577_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011675644.1|671663_673013_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_011675645.1|673229_673502_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_011675646.1|673505_673775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031286717.1|674231_675005_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_011675648.1|675038_675572_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011675649.1|675549_676110_+	ribonuclease M5	NA	NA	NA	NA	NA
WP_011675650.1|676239_677124_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_011675651.1|677231_678290_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_011675652.1|678421_678979_+	elongation factor P	NA	NA	NA	NA	NA
WP_011675653.1|679125_679527_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_011675654.1|679519_680497_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_011675655.1|680720_682724_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
WP_011675656.1|682823_683966_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_063284050.1|683955_685095_+	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA	NA
WP_041167435.1|685178_686627_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_011675658.1|686710_689113_+	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	40.2	1.9e-10
WP_011675659.1|689117_690008_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675660.1|690349_692152_+	glycoside hydrolase family 13 protein	NA	NA	NA	NA	NA
WP_011675661.1|692227_692485_+	helix-turn-helix transcriptional regulator	NA	S5MAC0	Brevibacillus_phage	42.4	1.6e-05
WP_011675662.1|692584_692734_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011675663.1|692753_693452_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_011675664.1|693642_694497_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	877530	918584	2453581	integrase,transposase	Streptococcus_phage(25.0%)	41	899595:899611	925030:925046
WP_081175741.1|877530_878421_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675814.1|878609_880652_-	cadmium-translocating P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	25.4	4.2e-19
WP_011835499.1|880840_881698_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.0	2.6e-39
WP_031286477.1|881868_883122_+	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	32.3	1.2e-45
WP_011675817.1|883124_883364_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_011675818.1|883590_884481_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675819.1|884539_885685_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	38.8	4.5e-47
WP_014572853.1|885909_886767_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_011675821.1|886767_887268_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011675822.1|887343_888150_+	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_011675823.1|888146_888593_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_011675824.1|888772_890440_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_011675826.1|891141_891708_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_011675827.1|891802_892324_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_011675828.1|892345_893272_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_032940916.1|893515_894457_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_011675830.1|894612_894993_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_011675831.1|894989_897287_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_011675832.1|897361_898351_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_011675833.1|898549_898834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675834.1|898984_900502_+	ABC transporter permease	NA	NA	NA	NA	NA
899595:899611	attL	ATGTTGTCATTGAATCA	NA	NA	NA	NA
WP_011675835.1|900609_901272_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	3.2e-21
WP_011675836.1|901631_902519_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011675616.1|902777_903668_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675837.1|903754_904429_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_011675838.1|904588_904933_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_011675839.1|905108_905525_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_011675840.1|905862_906324_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_021037017.1|906577_907087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675842.1|907079_908408_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_011675843.1|908638_909196_+	HdeD family acid-resistance protein	NA	NA	NA	NA	NA
WP_011675844.1|909258_909504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011675845.1|909775_910501_+	nicotinamide mononucleotide transporter	NA	A0A2P0ZKW0	Lactobacillus_phage	28.7	1.4e-14
WP_011675847.1|911053_911479_+	universal stress protein	NA	NA	NA	NA	NA
WP_011675848.1|911646_912009_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_011675849.1|912070_912604_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011675850.1|913275_914166_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675851.1|914300_916172_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_003131392.1|916360_916693_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_041167441.1|916828_917803_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	28.6	8.6e-31
WP_010890648.1|917903_918584_+|transposase	IS6-like element ISS1S family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.5	8.5e-110
925030:925046	attR	ATGTTGTCATTGAATCA	NA	NA	NA	NA
>prophage 6
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	943041	996564	2453581	transposase	Staphylococcus_phage(12.5%)	42	NA	NA
WP_011675872.1|943041_944217_+|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
WP_011675874.1|945908_946799_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675875.1|946962_947871_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_081175749.1|949469_952583_+	DUF4422 domain-containing protein	NA	NA	NA	NA	NA
WP_011675878.1|952683_953574_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675879.1|953812_954928_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_011675881.1|956044_957280_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_011675882.1|957337_957607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675883.1|957677_958382_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_011675884.1|959639_960086_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_011675885.1|960169_960496_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011675886.1|960656_962324_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_011675887.1|962432_963026_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	43.0	1.4e-15
WP_011675888.1|963168_964017_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011675889.1|964285_965173_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011675890.1|965184_965937_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.2	1.8e-28
WP_011675891.1|965938_966166_+	DUF4059 family protein	NA	NA	NA	NA	NA
WP_011675892.1|966363_967290_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.1	3.4e-85
WP_011675893.1|967430_967679_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_041167444.1|967920_970374_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	44.2	8.6e-104
WP_041167547.1|970392_970980_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_011675896.1|971057_972116_+	endonuclease	NA	NA	NA	NA	NA
WP_011675898.1|973234_973498_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_011675899.1|973614_974952_+	PFL family protein	NA	NA	NA	NA	NA
WP_011675900.1|975047_975527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675901.1|975597_976293_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_011675902.1|976289_977036_+	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA	NA
WP_011675903.1|977050_977455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675904.1|977602_978646_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_014572780.1|978675_979215_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_011675956.1|979286_981110_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	45.8	3.4e-129
WP_011675957.1|981272_983117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675958.1|983286_985050_+	oleate hydratase	NA	NA	NA	NA	NA
WP_011675959.1|985116_986256_+	amidohydrolase	NA	NA	NA	NA	NA
WP_011675960.1|986377_987079_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_011675961.1|987161_988079_+	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_011675962.1|988078_989983_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_152023931.1|990067_991442_+|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.3	1.7e-53
WP_095586744.1|991498_992646_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_011675964.1|992923_994249_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_011675965.1|994712_995114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081175751.1|995673_996564_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1013573	1027202	2453581		Enterococcus_phage(25.0%)	11	NA	NA
WP_011675982.1|1013573_1014266_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.8	1.6e-31
WP_011675983.1|1014258_1015194_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011675984.1|1015303_1016281_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	65.7	6.0e-117
WP_011675985.1|1016565_1018734_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.7	3.3e-256
WP_011675986.1|1018870_1019293_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	36.4	1.7e-12
WP_011675987.1|1019294_1019513_-	redoxin NrdH	NA	C3U2K9	Lactococcus_phage	47.6	5.8e-12
WP_011675988.1|1019686_1020328_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_011675989.1|1020606_1022541_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.4	1.8e-125
WP_011675992.1|1023175_1024009_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	40.0	5.3e-21
WP_011675993.1|1024005_1024455_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011675994.1|1024727_1027202_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.9	1.0e-96
>prophage 8
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1034774	1124185	2453581	integrase,transposase,holin,protease,terminase,tRNA,head,plate,portal,capsid,tail	Lactococcus_phage(70.59%)	105	1043210:1043226	1073309:1073325
WP_011675978.1|1034774_1035950_+|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	31.9	9.4e-32
WP_011676002.1|1036331_1036784_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_011676003.1|1036846_1037752_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.8	6.0e-10
WP_011676004.1|1037909_1038353_+	divergent PAP2 family protein	NA	NA	NA	NA	NA
WP_152023931.1|1038606_1039981_+|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.3	1.7e-53
WP_095586744.1|1040053_1041200_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_041167449.1|1041215_1042859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676006.1|1042861_1043818_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	38.1	2.4e-49
1043210:1043226	attL	GAAAAATTTGAAAATGA	NA	NA	NA	NA
WP_011676007.1|1043945_1044632_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	2.5e-32
WP_011676008.1|1044652_1045168_+	DUF2127 domain-containing protein	NA	NA	NA	NA	NA
WP_011676009.1|1045171_1046497_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	30.4	9.6e-25
WP_011676010.1|1046506_1047163_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_011676011.1|1047344_1049162_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	Q76DQ7	Chlorella_virus	36.3	6.2e-91
WP_041167450.1|1049280_1049964_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_011676013.1|1050263_1051388_-|integrase	site-specific integrase	integrase	Q9B016	Lactococcus_phage	99.7	3.0e-213
WP_011676014.1|1051511_1052345_-	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	36.1	3.9e-16
WP_011676015.1|1052363_1052930_-	hypothetical protein	NA	A0A1P8BM30	Lactococcus_phage	58.8	2.5e-54
WP_011676016.1|1052958_1053306_-	XRE family transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	54.5	9.8e-30
WP_011676017.1|1053596_1053827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676018.1|1053841_1054564_+	phage antirepressor protein	NA	A0A1P8BLQ9	Lactococcus_phage	98.8	9.9e-133
WP_011676019.1|1054576_1054912_+	DUF771 domain-containing protein	NA	Q38331	Lactococcus_phage	99.1	2.2e-58
WP_010905685.1|1055049_1055244_+	hypothetical protein	NA	Q77JL6	Lactococcus_phage	100.0	3.0e-28
WP_010905686.1|1055240_1055516_-	hypothetical protein	NA	Q9AYU7	Lactococcus_phage	100.0	1.6e-46
WP_011676021.1|1055621_1055870_+	hypothetical protein	NA	A0A059NT64	Lactococcus_phage	96.3	1.6e-34
WP_011676022.1|1055972_1056362_+	hypothetical protein	NA	O48508	Lactococcus_phage	99.2	6.0e-68
WP_134794186.1|1056381_1056981_+	ERF family protein	NA	Q6JM07	Lactococcus_phage	96.5	2.9e-85
WP_011676024.1|1056980_1057331_+	single-stranded DNA-binding protein	NA	Q6JM06	Lactococcus_phage	95.7	1.2e-56
WP_011676025.1|1057464_1058274_+	helix-turn-helix domain-containing protein	NA	Q9MCG3	Lactococcus_phage	83.3	1.2e-110
WP_011676026.1|1058254_1058476_+	hypothetical protein	NA	Q94M91	Lactococcus_phage	100.0	1.9e-34
WP_011676027.1|1058465_1058855_+	RusA family crossover junction endodeoxyribonuclease	NA	R9QLL1	Lactococcus_phage	99.2	9.2e-69
WP_011676028.1|1058858_1059098_+	DUF1031 family protein	NA	Q38102	Lactococcus_phage	92.4	1.6e-34
WP_041167451.1|1059202_1059493_+	hypothetical protein	NA	Q9AZU9	Lactococcus_phage	99.0	2.7e-49
WP_011676030.1|1059514_1059694_+	DUF1497 domain-containing protein	NA	Q9MCB5	Lactococcus_phage	96.6	3.5e-23
WP_011676031.1|1059683_1060256_+	DUF658 family protein	NA	Q9AZU8	Lactococcus_phage	92.1	1.0e-84
WP_011676032.1|1060270_1060603_+	hypothetical protein	NA	Q9G0E0	Lactococcus_phage	94.1	2.3e-12
WP_011676033.1|1060626_1060986_+	hypothetical protein	NA	A0A1P8BLI9	Lactococcus_phage	95.0	1.5e-60
WP_139949456.1|1060957_1061644_+	DUF1642 domain-containing protein	NA	A0A1P8BMI6	Lactococcus_phage	54.5	1.2e-50
WP_011676037.1|1061945_1062401_+	dUTP diphosphatase	NA	Q9AYX8	Lactococcus_phage	99.3	8.0e-72
WP_011676038.1|1062419_1062605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676039.1|1062601_1062745_+	DUF1660 domain-containing protein	NA	O80276	Lactococcus_virus	74.5	6.7e-17
WP_011676040.1|1062752_1062938_+	hypothetical protein	NA	Q8LTR8	Lactococcus_phage	67.2	6.2e-15
WP_011676041.1|1062934_1063153_+	hypothetical protein	NA	A0A1P8BKA1	Lactococcus_phage	95.6	1.2e-30
WP_010905705.1|1063145_1063328_+	hypothetical protein	NA	Q9AZZ4	Lactococcus_phage	100.0	4.3e-29
WP_011676044.1|1063804_1064227_+	RinA family protein	NA	Q9AZM9	Lactococcus_phage	99.3	3.2e-51
WP_011676045.1|1064674_1065142_+|transposase	transposase	transposase	A0A1P8BLJ8	Lactococcus_phage	95.4	2.2e-77
WP_011676046.1|1065134_1066523_+|terminase	phage terminase large subunit	terminase	Q8LTR4	Lactococcus_phage	99.4	2.1e-272
WP_011676047.1|1066523_1067885_+|portal	phage portal protein	portal	Q9AZ65	Lactococcus_phage	96.2	2.1e-245
WP_011676048.1|1067888_1068932_+|capsid	minor capsid protein	capsid	B5SP29	Lactococcus_phage	98.0	8.8e-191
WP_011676049.1|1069046_1069709_+	DUF4355 domain-containing protein	NA	Q9AZ62	Lactococcus_phage	97.7	1.8e-72
WP_011676050.1|1069710_1070529_+|capsid	N4-gp56 family major capsid protein	capsid	Q9AZ61	Lactococcus_phage	99.3	4.5e-142
WP_011676051.1|1070528_1070729_+	hypothetical protein	NA	B5SP32	Lactococcus_phage	100.0	9.6e-30
WP_011676052.1|1070712_1071045_+|head,tail	phage head-tail connector protein	head,tail	B5SP33	Lactococcus_phage	99.1	2.1e-53
WP_011676053.1|1071041_1071353_+	hypothetical protein	NA	A0A1P8BKV3	Lactococcus_phage	97.1	6.7e-54
WP_011676054.1|1071349_1071676_+	HK97 gp10 family phage protein	NA	A0A1L2K255	Streptococcus_phage	92.6	4.7e-50
WP_011676055.1|1071672_1072068_+	hypothetical protein	NA	A0A1P8BM84	Lactococcus_phage	97.7	2.2e-65
WP_011676056.1|1072078_1072588_+|tail	phage major tail protein, TP901-1 family	tail	Q77K19	Lactococcus_phage	98.8	1.8e-88
WP_011676057.1|1072703_1073054_+	hypothetical protein	NA	A0A1P8BLS4	Lactococcus_phage	98.3	5.6e-57
WP_011676058.1|1073137_1073407_+	hypothetical protein	NA	A0A1P8BKT4	Lactococcus_phage	97.8	7.3e-41
1073309:1073325	attR	GAAAAATTTGAAAATGA	NA	NA	NA	NA
WP_011676059.1|1073422_1076047_+	tape measure protein	NA	A0A1P8BM12	Lactococcus_phage	95.8	1.6e-249
WP_011676060.1|1076056_1076818_+	hypothetical protein	NA	Q9AZ58	Lactococcus_phage	97.2	2.0e-139
WP_011676061.1|1076817_1079757_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1P8BMB8	Lactococcus_phage	89.3	0.0e+00
WP_011676062.1|1079774_1082219_+|plate	BppU family phage baseplate upper protein	plate	A0A1P8BMJ5	Lactococcus_phage	89.8	1.4e-74
WP_011676064.1|1082615_1082918_+	hypothetical protein	NA	Q8LTP6	Lactococcus_phage	95.0	1.7e-49
WP_011676065.1|1082907_1083132_+|holin	holin	holin	Q9G090	Lactococcus_phage	98.6	2.5e-34
WP_011676066.1|1083128_1084418_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9FZS8	Lactococcus_phage	99.8	1.4e-246
WP_011676067.1|1084616_1084916_+	hypothetical protein	NA	Q9AZG1	Lactococcus_phage	56.1	5.7e-26
WP_011676068.1|1084929_1085841_+	DUF4065 domain-containing protein	NA	Q9AZG0	Lactococcus_phage	89.0	1.1e-152
WP_003132737.1|1086196_1086847_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_011676069.1|1087069_1087462_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_011676070.1|1087634_1089542_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.8	5.2e-48
WP_014572500.1|1089704_1089845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676071.1|1089962_1090592_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	26.8	5.2e-05
WP_011676072.1|1090744_1092016_+	dihydroorotase	NA	NA	NA	NA	NA
WP_080513955.1|1092317_1093340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081175754.1|1093530_1094421_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675534.1|1094787_1095963_-|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
WP_011676075.1|1096077_1096674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152023927.1|1096886_1097997_+|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.8	7.2e-50
WP_011676077.1|1098101_1098503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676079.1|1099033_1101463_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_011676080.1|1101727_1102396_+	DnaD domain-containing protein	NA	C5J987	Streptococcus_phage	31.4	1.1e-05
WP_011676081.1|1102417_1103074_+	endonuclease III	NA	NA	NA	NA	NA
WP_011676082.1|1103066_1103756_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_011676083.1|1103752_1104526_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_011676084.1|1104560_1104926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676085.1|1105064_1105880_-	sugar-phosphatase	NA	NA	NA	NA	NA
WP_011676086.1|1105932_1107276_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	33.0	1.2e-27
WP_011676087.1|1107448_1107847_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_011676088.1|1107839_1109015_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_003130644.1|1109184_1109499_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_011676089.1|1109501_1109837_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_003130646.1|1109838_1110123_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_011676090.1|1110489_1111911_+	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_021212212.1|1111984_1112953_+	phosphate starvation-inducible protein PhoH	NA	H6X2N1	Pseudomonas_phage	48.4	2.0e-48
WP_011676092.1|1113022_1113517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_011676093.1|1113607_1114096_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_011676094.1|1114079_1114535_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_011676095.1|1114551_1115130_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_011676096.1|1115187_1115838_-	ComF family protein	NA	NA	NA	NA	NA
WP_011676097.1|1117188_1117824_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	54.5	6.6e-56
WP_011676098.1|1118431_1119451_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	43.4	5.2e-55
WP_011676099.1|1119559_1120327_+	5'-nucleotidase	NA	NA	NA	NA	NA
WP_011676100.1|1120563_1121211_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_011676101.1|1121210_1122164_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_011676102.1|1122163_1124185_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 9
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1215848	1284929	2453581	tRNA,transposase	Staphylococcus_phage(27.27%)	58	NA	NA
WP_088792927.1|1215848_1216960_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_011676291.1|1217671_1218739_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	41.5	1.2e-54
WP_011676292.1|1218901_1219234_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011676294.1|1219909_1220827_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_153927107.1|1222080_1222227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676296.1|1222405_1223113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676297.1|1223716_1224787_+	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_011676298.1|1224836_1226183_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_011676299.1|1226254_1228381_-	type I DNA topoisomerase	NA	E3T4K4	Cafeteria_roenbergensis_virus	37.6	1.9e-99
WP_011676300.1|1228646_1229495_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_011676301.1|1229643_1230024_-	RidA family protein	NA	NA	NA	NA	NA
WP_011676302.1|1230063_1230774_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_011676303.1|1232216_1233239_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_011676304.1|1233284_1233761_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_011676305.1|1233753_1235478_-	acetolactate synthase large subunit	NA	A9YVT5	Ostreococcus_tauri_virus	27.4	6.6e-42
WP_011676306.1|1235488_1237201_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_011676307.1|1237320_1238103_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.0	2.9e-13
WP_011676134.1|1238657_1239548_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676135.1|1239740_1240274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676136.1|1240273_1241650_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_011676137.1|1241706_1242159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676138.1|1242201_1242648_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_011676139.1|1242649_1243681_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_011676140.1|1243821_1244613_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_011676141.1|1244639_1245125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676142.1|1245160_1246702_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	37.5	2.3e-06
WP_011676143.1|1247124_1248084_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_011676144.1|1248116_1248902_-	histidinol-phosphatase HisJ family protein	NA	NA	NA	NA	NA
WP_011676145.1|1248902_1249541_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA	NA
WP_011676146.1|1249537_1250317_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_011676147.1|1250285_1251026_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
WP_011676148.1|1251025_1251634_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_011676149.1|1251678_1252359_-	phosphotransferase	NA	A0A193CJY5	Infectious_laryngotracheitis_virus	26.1	4.9e-09
WP_011676150.1|1252460_1253069_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_011676151.1|1253069_1254377_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_011676153.1|1255216_1256173_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_011676154.1|1256172_1257243_-	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
WP_011676155.1|1257772_1258564_-	DUF1295 domain-containing protein	NA	NA	NA	NA	NA
WP_139949461.1|1258560_1260267_-	DegV family EDD domain-containing protein	NA	NA	NA	NA	NA
WP_152023933.1|1260326_1261181_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676157.1|1261408_1261771_-	DUF2177 family protein	NA	NA	NA	NA	NA
WP_011676158.1|1261846_1262326_-	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_011676159.1|1262644_1264648_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	3.2e-80
WP_011676160.1|1264790_1265966_-|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.7	1.4e-32
WP_011676161.1|1266174_1266507_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011676162.1|1267087_1267978_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676163.1|1268293_1268692_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011676164.1|1268799_1269945_+	MFS transporter	NA	NA	NA	NA	NA
WP_011676165.1|1270051_1271716_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_011676166.1|1271870_1273127_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011676167.1|1273154_1274327_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_011676168.1|1274392_1275013_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011676169.1|1275014_1276622_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011676170.1|1276666_1278037_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	56.0	3.8e-141
WP_011676171.1|1278099_1278921_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011676172.1|1279058_1279763_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_011676174.1|1281240_1283586_-	HAD-IC family P-type ATPase	NA	NA	NA	NA	NA
WP_011676160.1|1283753_1284929_+|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.7	1.4e-32
>prophage 10
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1529943	1540256	2453581		Synechococcus_phage(33.33%)	7	NA	NA
WP_011834927.1|1529943_1531500_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	46.5	1.6e-71
WP_011676466.1|1531676_1532219_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	30.6	4.7e-10
WP_011676467.1|1533507_1534038_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011676468.1|1534089_1535679_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	34.1	5.0e-12
WP_011676469.1|1535869_1536418_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	32.0	1.5e-19
WP_011676470.1|1536446_1537463_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.5	5.4e-60
WP_011676471.1|1537652_1540256_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	32.7	8.0e-124
>prophage 11
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1621245	1632762	2453581		Bacillus_phage(25.0%)	12	NA	NA
WP_063284024.1|1621245_1622718_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	33.2	5.1e-27
WP_011676631.1|1622723_1623416_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	5.3e-35
WP_011676632.1|1623572_1624103_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_011676633.1|1624235_1624481_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_011676634.1|1624804_1625167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676635.1|1625403_1626315_-	CHAP domain-containing protein	NA	A0A1P8BMN5	Lactococcus_phage	45.6	3.4e-05
WP_011834858.1|1626407_1627244_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_011676637.1|1627355_1627760_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	47.4	1.3e-28
WP_011676638.1|1628196_1628967_+	hypothetical protein	NA	Q38326	Lactococcus_phage	75.2	6.3e-69
WP_011676639.1|1629127_1630201_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.1	1.5e-60
WP_011676640.1|1630288_1631221_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	30.5	1.3e-23
WP_011676641.1|1631469_1632762_-	uracil-xanthine permease	NA	Q9KX94	Enterobacteria_phage	35.7	8.1e-61
>prophage 12
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1641971	1710106	2453581	transposase,holin,bacteriocin,terminase,plate,head,portal,capsid,tail	Lactococcus_phage(88.37%)	72	NA	NA
WP_081175777.1|1641971_1642862_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676655.1|1643492_1645049_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_011676656.1|1645127_1648181_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_011676657.1|1648229_1649942_-	ribonuclease J	NA	NA	NA	NA	NA
WP_011676658.1|1650291_1650963_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	44.3	6.1e-20
WP_011676659.1|1651002_1651896_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_011676660.1|1652224_1652680_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	38.9	1.0e-26
WP_011676661.1|1652689_1653766_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011676662.1|1653861_1654725_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_011676663.1|1655073_1655325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676664.1|1655492_1657469_-	transketolase	NA	NA	NA	NA	NA
WP_011676665.1|1657636_1659037_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_011676666.1|1659089_1659389_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_139949467.1|1659390_1659954_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_011676384.1|1659977_1660868_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676669.1|1662511_1663153_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_011676671.1|1664103_1665522_-	glucuronate isomerase	NA	NA	NA	NA	NA
WP_011676672.1|1665534_1666416_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_011676673.1|1666475_1668002_-	MFS transporter	NA	NA	NA	NA	NA
WP_041167593.1|1668187_1669264_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_011676675.1|1669420_1671055_-	mannitol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011676494.1|1671438_1672119_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011676495.1|1672183_1673614_-	MFS transporter	NA	NA	NA	NA	NA
WP_011676496.1|1673972_1674278_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011676497.1|1674282_1674507_-|bacteriocin	garvicin Q family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011676498.1|1674721_1675600_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676499.1|1675581_1675782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676500.1|1676793_1678140_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1P8BMS7	Lactococcus_phage	95.5	5.9e-248
WP_011676501.1|1678136_1678403_-|holin	phage holin	holin	Q38613	Lactococcus_phage	98.9	9.5e-41
WP_011676502.1|1678427_1680479_-|plate	BppU family phage baseplate upper protein	plate	A0A1P8BMU0	Lactococcus_phage	73.2	2.6e-231
WP_011676503.1|1680491_1680716_-|holin	holin	holin	A0A1B1IMU8	Lactococcus_phage	100.0	6.1e-33
WP_011676504.1|1680728_1681244_-	hypothetical protein	NA	Q9G096	Lactococcus_phage	50.6	1.3e-33
WP_050748323.1|1681262_1682159_-	hypothetical protein	NA	Q8LTP8	Lactococcus_phage	77.0	1.0e-123
WP_041167465.1|1682595_1683576_-|plate	phage baseplate upper protein	plate	B5SP43	Lactococcus_phage	97.2	5.9e-181
WP_011676506.1|1683588_1686378_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1P8BLR1	Lactococcus_phage	96.9	0.0e+00
WP_011676507.1|1686377_1687139_-	hypothetical protein	NA	Q9AYV7	Lactococcus_phage	96.4	8.2e-138
WP_011676508.1|1687152_1689366_-	tape measure protein	NA	Q8LTQ2	Lactococcus_phage	97.4	4.8e-295
WP_011676509.1|1689381_1689651_-	hypothetical protein	NA	A0A1P8BKT4	Lactococcus_phage	100.0	5.1e-42
WP_011676510.1|1689734_1690085_-	hypothetical protein	NA	A0A1P8BMH1	Lactococcus_phage	97.4	2.1e-56
WP_011676511.1|1690200_1690710_-|tail	phage major tail protein, TP901-1 family	tail	Q77K19	Lactococcus_phage	97.0	4.9e-86
WP_011676512.1|1690720_1691110_-	hypothetical protein	NA	Q38611	Lactococcus_phage	96.9	1.1e-64
WP_011676513.1|1691106_1691445_-	HK97 gp10 family phage protein	NA	Q77K21	Lactococcus_phage	95.5	1.6e-53
WP_011676514.1|1691441_1691753_-	hypothetical protein	NA	A0A1P8BMJ2	Lactococcus_phage	96.1	5.7e-53
WP_011676515.1|1691749_1692082_-|head,tail	phage head-tail connector protein	head,tail	A0A1L2JXP0	Streptococcus_phage	97.3	1.8e-52
WP_011676051.1|1692065_1692266_-	hypothetical protein	NA	B5SP32	Lactococcus_phage	100.0	9.6e-30
WP_011676516.1|1692265_1693042_-|capsid	N4-gp56 family major capsid protein	capsid	Q9AZ61	Lactococcus_phage	98.8	3.1e-132
WP_011676517.1|1693087_1693756_-	DUF4355 domain-containing protein	NA	Q9AZ62	Lactococcus_phage	99.1	1.9e-74
WP_011676518.1|1693940_1694288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676519.1|1694247_1694589_-	hypothetical protein	NA	A0A1P8BM52	Lactococcus_phage	47.1	3.2e-09
WP_011676520.1|1694585_1695635_-|capsid	minor capsid protein	capsid	B5SP29	Lactococcus_phage	97.4	4.1e-188
WP_011676521.1|1695638_1697015_-|portal	phage portal protein	portal	Q9AZ65	Lactococcus_phage	94.8	4.5e-243
WP_011676522.1|1697029_1698418_-|terminase	phage terminase large subunit	terminase	Q9AZ66	Lactococcus_phage	98.5	3.1e-268
WP_011676523.1|1698410_1698821_-|terminase	terminase	terminase	Q9AZ67	Lactococcus_phage	100.0	1.4e-67
WP_011676524.1|1699129_1699552_-	RinA family protein	NA	Q9AZ68	Lactococcus_phage	96.4	7.2e-51
WP_011676525.1|1699629_1699836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676526.1|1699964_1700258_-	DUF1359 domain-containing protein	NA	Q9AZ70	Lactococcus_phage	100.0	7.5e-47
WP_011676527.1|1700388_1700592_-	DUF1660 domain-containing protein	NA	Q8LTM1	Lactococcus_phage	100.0	1.1e-28
WP_011676528.1|1700588_1700819_-	hypothetical protein	NA	Q94M84	Lactococcus_phage	94.7	5.1e-35
WP_011676529.1|1700871_1701291_-	dUTP diphosphatase	NA	A5GYP0	Lactococcus_phage	99.3	6.7e-73
WP_011676530.1|1701287_1701599_-	hypothetical protein	NA	R9R1F9	Lactococcus_phage	98.6	4.5e-34
WP_011676531.1|1701595_1702210_-	DUF1642 domain-containing protein	NA	A5GYN9	Lactococcus_phage	56.7	2.4e-47
WP_011676532.1|1702202_1702409_-	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	98.5	7.6e-30
WP_011676533.1|1702409_1702670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676534.1|1702740_1703250_-	DUF658 family protein	NA	A0A1P8BM35	Lactococcus_phage	94.3	3.2e-77
WP_011676535.1|1703239_1703419_-	DUF1497 domain-containing protein	NA	Q9MCB5	Lactococcus_phage	100.0	5.4e-24
WP_041167598.1|1703530_1703770_-	DUF1031 family protein	NA	Q38102	Lactococcus_phage	97.5	5.7e-37
WP_011676537.1|1703782_1704172_-	RusA family crossover junction endodeoxyribonuclease	NA	R9QLL1	Lactococcus_phage	98.4	4.6e-68
WP_011676538.1|1704168_1704894_-	hypothetical protein	NA	A0A1P8BKN5	Lactococcus_phage	98.8	3.4e-133
WP_139949471.1|1704893_1705265_-	phage replisome organiser protein	NA	A0A1P8BLH6	Lactococcus_phage	100.0	3.9e-40
WP_152023927.1|1705314_1706425_+|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.8	7.2e-50
WP_011676540.1|1706695_1707670_-	D-ribose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011676541.1|1708627_1710106_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.1	5.9e-15
>prophage 13
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1847361	1903379	2453581	transposase,bacteriocin	Bacillus_phage(14.29%)	45	NA	NA
WP_011676771.1|1847361_1848252_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676773.1|1850945_1852307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011676774.1|1852303_1853233_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	3.1e-22
WP_011676775.1|1853338_1853737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676776.1|1853853_1854414_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_011676777.1|1854586_1855765_-	cation transporter	NA	NA	NA	NA	NA
WP_011676778.1|1856152_1856809_-	thiaminase II	NA	NA	NA	NA	NA
WP_011676779.1|1857027_1857330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676780.1|1857350_1858322_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_011676781.1|1858327_1858897_-	biotin transporter BioY	NA	NA	NA	NA	NA
WP_011676782.1|1859097_1859988_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676783.1|1860040_1861285_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_011676784.1|1861274_1862423_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_011676786.1|1862771_1863065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676788.1|1863823_1864669_+	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
WP_011676789.1|1864815_1867626_-	type VII secretion protein EsaA	NA	NA	NA	NA	NA
WP_162484997.1|1867688_1868045_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_011676791.1|1868154_1868817_-|bacteriocin	bacteriocin immunity protein	bacteriocin	Q9AZK7	Lactococcus_phage	37.1	1.9e-05
WP_152023938.1|1869023_1870134_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.6e-49
WP_011676793.1|1870167_1870581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676794.1|1870688_1870979_-	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_011676795.1|1871350_1872763_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_011676796.1|1872858_1873317_-	SUF system NifU family Fe-S cluster assembly protein	NA	A0A218MM29	uncultured_virus	32.1	4.5e-06
WP_031286519.1|1873450_1873933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676798.1|1873934_1875152_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.6	1.6e-106
WP_011676799.1|1875151_1876408_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_011676800.1|1876547_1877318_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	25.7	4.7e-08
WP_011676801.1|1877493_1878819_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_011676802.1|1878821_1879523_-	adaptor protein MecA	NA	NA	NA	NA	NA
WP_011676803.1|1879650_1880385_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.8	1.8e-36
WP_011676804.1|1880384_1881071_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011676805.1|1881216_1882125_-	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_011676806.1|1882248_1885872_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.4	2.0e-72
WP_011676807.1|1885979_1889570_-	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	24.5	8.3e-39
WP_011676808.1|1889838_1890438_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_011676809.1|1890673_1891348_+	helix-turn-helix transcriptional regulator	NA	S4TZZ1	uncultured_phage	43.1	1.0e-06
WP_081175788.1|1891462_1893346_+	peptidase M13	NA	E3T4I7	Cafeteria_roenbergensis_virus	30.5	6.0e-73
WP_011676812.1|1893770_1895444_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_011676813.1|1895654_1897106_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_011676814.1|1897187_1897448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676815.1|1897565_1898456_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676816.1|1898475_1899498_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.5	5.9e-30
WP_011676817.1|1899717_1901499_+	DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	36.5	2.8e-72
WP_011676818.1|1901878_1902061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152023939.1|1902267_1903379_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.6e-49
>prophage 14
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	1948007	2029334	2453581	integrase,transposase,holin,protease,terminase,tRNA,portal,capsid,tail	Lactococcus_phage(77.59%)	92	1989781:1989803	2029354:2029376
WP_011676863.1|1948007_1949354_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2L2DK39	Acanthamoeba_polyphaga_mimivirus	30.7	1.4e-50
WP_011676864.1|1949366_1949960_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_011676865.1|1949973_1950573_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_011676866.1|1950678_1951449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676867.1|1951717_1954027_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_041167611.1|1954307_1955453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676869.1|1955817_1956783_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.5	5.2e-36
WP_011676870.1|1956887_1957319_-	universal stress protein	NA	NA	NA	NA	NA
WP_041167468.1|1957618_1958743_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	37.1	4.0e-32
WP_011676872.1|1958768_1959107_+	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_003132374.1|1959201_1960389_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.4	2.0e-34
WP_011676873.1|1960632_1960815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835767.1|1960873_1960990_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_011676874.1|1961049_1963848_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	26.1	1.9e-83
WP_011676875.1|1964297_1965233_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_011676876.1|1965289_1966081_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_011676877.1|1966077_1966353_-	YggT family protein	NA	NA	NA	NA	NA
WP_011676878.1|1966352_1966943_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_011676879.1|1966976_1967654_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_011676880.1|1967657_1968911_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_011676881.1|1968940_1970311_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_011676882.1|1970473_1971343_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	33.8	2.5e-13
WP_011676883.1|1971459_1972188_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_011676884.1|1972380_1973271_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676885.1|1973347_1974460_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_021211914.1|1974597_1975443_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	32.9	1.5e-31
WP_011676887.1|1975454_1976777_-	MFS transporter	NA	NA	NA	NA	NA
WP_011676889.1|1978268_1979579_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	31.7	1.5e-62
WP_011676890.1|1979707_1980382_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_014572089.1|1980399_1980903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676892.1|1981039_1981720_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_011676893.1|1981747_1982026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676894.1|1982018_1982603_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_011676895.1|1982704_1984081_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	35.7	5.5e-31
WP_011676896.1|1984303_1985095_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	33.2	2.4e-31
WP_010906184.1|1985178_1985448_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_011676897.1|1985618_1987496_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	32.4	9.8e-23
WP_011676898.1|1987495_1988272_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_011676899.1|1988394_1989669_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
1989781:1989803	attL	AACGTAACTAAAAACGTAACTAA	NA	NA	NA	NA
WP_011676900.1|1989956_1990583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041167469.1|1990693_1991632_-	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	50.6	7.9e-82
WP_011676902.1|1991549_1993151_-	membrane protein	NA	NA	NA	NA	NA
WP_063284079.1|1993290_1994070_-|holin	phage holin	holin	A0A1P8BKR7	Lactococcus_phage	96.9	2.0e-123
WP_063284078.1|1994056_1994359_-|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	93.6	9.4e-45
WP_011676904.1|1994371_1994743_-	hypothetical protein	NA	A0A1B1IMJ7	Lactococcus_phage	94.6	8.1e-22
WP_063284077.1|1994760_1996218_-	hypothetical protein	NA	A0A059NTA1	Lactococcus_phage	50.5	2.4e-93
WP_041167470.1|1996351_1998853_-	hypothetical protein	NA	A0A059NT86	Lactococcus_phage	83.2	0.0e+00
WP_011676906.1|1998864_1999230_-	hypothetical protein	NA	A0A059NT91	Lactococcus_phage	98.3	9.3e-63
WP_011676907.1|1999241_2003942_-|tail	tail protein	tail	A0A059NT57	Lactococcus_phage	96.8	0.0e+00
WP_011676908.1|2003973_2004345_-	hypothetical protein	NA	A0A059NT78	Lactococcus_phage	100.0	1.1e-47
WP_011676909.1|2004368_2004779_-	hypothetical protein	NA	A0A059NTA0	Lactococcus_phage	99.3	2.8e-68
WP_011676910.1|2004852_2005266_-	hypothetical protein	NA	A0A059NT84	Lactococcus_phage	92.0	1.3e-65
WP_011676911.1|2005278_2005641_-	hypothetical protein	NA	A0A059NT89	Lactococcus_phage	96.7	3.6e-59
WP_011676912.1|2005640_2006189_-	hypothetical protein	NA	A0A059NT55	Lactococcus_phage	100.0	6.0e-98
WP_041167471.1|2006172_2006526_-	hypothetical protein	NA	A0A059NT74	Lactococcus_phage	96.6	3.0e-58
WP_011676914.1|2006506_2006833_-	hypothetical protein	NA	A0A059NT99	Lactococcus_phage	95.5	1.1e-51
WP_011676915.1|2006853_2007972_-	Ig-like domain-containing protein	NA	A0A059NT82	Lactococcus_phage	98.1	1.1e-165
WP_041167616.1|2007983_2008640_-	DUF4355 domain-containing protein	NA	A0A182BQ92	Lactococcus_phage	89.9	1.5e-79
WP_011676917.1|2008804_2009911_-|capsid	minor capsid protein	capsid	A0A059NT80	Lactococcus_phage	98.4	1.9e-199
WP_011676918.1|2009916_2010204_-|protease	ribosomal-processing cysteine protease Prp	protease	A0A059NT85	Lactococcus_phage	95.8	5.6e-47
WP_041167618.1|2010200_2010431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676921.1|2010593_2012102_-|portal	phage portal protein	portal	A0A182BQ97	Lactococcus_phage	97.8	1.0e-248
WP_011676922.1|2012110_2013346_-|terminase	PBSX family phage terminase large subunit	terminase	A0A182BQ98	Lactococcus_phage	96.4	2.6e-234
WP_011676923.1|2013335_2013848_-|terminase	terminase small subunit	terminase	A0A059NT97	Lactococcus_phage	91.2	2.3e-75
WP_003131928.1|2014143_2014569_-	DUF722 domain-containing protein	NA	A0A059NT50	Lactococcus_phage	100.0	1.3e-76
WP_011676924.1|2014645_2014954_-	hypothetical protein	NA	A0A1P8BKI6	Lactococcus_phage	92.2	9.6e-45
WP_011676925.1|2015286_2015472_-	hypothetical protein	NA	A0A1P8BKA3	Lactococcus_phage	62.3	1.1e-11
WP_011676926.1|2015479_2015674_-	DUF1660 domain-containing protein	NA	A0A1P8BLJ5	Lactococcus_phage	98.4	3.7e-34
WP_011676927.1|2015670_2015913_-	hypothetical protein	NA	R9QN74	Lactococcus_phage	76.2	3.9e-33
WP_011676928.1|2015963_2016650_-	hypothetical protein	NA	Q38108	Lactococcus_phage	96.9	7.7e-127
WP_011676929.1|2016636_2016948_-	hypothetical protein	NA	Q8H9H2	Lactococcus_phage	96.9	2.9e-49
WP_011676930.1|2016947_2017367_-	dUTP diphosphatase	NA	A5GYP0	Lactococcus_phage	97.8	9.6e-72
WP_011676931.1|2017363_2017720_-	hypothetical protein	NA	A0A1B1IMV9	Lactococcus_phage	69.5	9.4e-44
WP_011676932.1|2017716_2018238_-	DUF1642 domain-containing protein	NA	A0A059NT63	Lactococcus_phage	59.3	4.4e-42
WP_011676933.1|2018230_2018437_-	DUF1125 domain-containing protein	NA	A0A1P8BL00	Lactococcus_phage	100.0	2.4e-31
WP_011676934.1|2018450_2018975_-	hypothetical protein	NA	A0A059NT70	Lactococcus_phage	99.4	1.6e-92
WP_011676935.1|2019081_2019321_-	DUF1031 domain-containing protein	NA	Q9MBY5	Lactococcus_phage	100.0	6.1e-39
WP_011676937.1|2019731_2019953_-	hypothetical protein	NA	Q94M91	Lactococcus_phage	98.6	2.4e-34
WP_011676939.1|2020878_2021304_-	single-stranded DNA-binding protein	NA	Q9AZV6	Lactococcus_phage	95.0	5.7e-72
WP_011676940.1|2021296_2022055_-	hypothetical protein	NA	Q0ILF6	Lactococcus_phage	97.6	7.7e-144
WP_011676941.1|2022063_2022459_-	hypothetical protein	NA	Q0ILF7	Lactococcus_phage	98.5	5.5e-69
WP_011676942.1|2022557_2022794_-	DUF1408 domain-containing protein	NA	A5GYQ9	Lactococcus_phage	100.0	7.1e-40
WP_063282574.1|2022890_2023256_+	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	37.0	3.6e-14
WP_011676945.1|2023771_2024041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676946.1|2024053_2024836_-	phage repressor protein/antirepressor Ant	NA	A0A1B1IMQ3	Lactococcus_phage	70.5	1.9e-89
WP_011676947.1|2024848_2025088_-	helix-turn-helix transcriptional regulator	NA	A0A1P8BKU7	Lactococcus_phage	94.9	1.4e-35
WP_011676948.1|2025185_2025695_+	hypothetical protein	NA	A0A1B1IMQ8	Lactococcus_phage	98.8	2.8e-89
WP_011676952.1|2026312_2026507_-	putative transcriptional regulator	NA	A0A1B1IMU6	Lactococcus_phage	94.8	1.0e-23
WP_011676953.1|2026769_2027297_+	helix-turn-helix domain-containing protein	NA	A0A1B1IMU5	Lactococcus_phage	52.2	6.5e-25
WP_011676954.1|2027302_2027737_+	zinc peptidase	NA	NA	NA	NA	NA
WP_011676955.1|2027750_2028086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676956.1|2028152_2029334_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	47.5	6.9e-91
2029354:2029376	attR	AACGTAACTAAAAACGTAACTAA	NA	NA	NA	NA
>prophage 15
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	2241861	2309362	2453581	integrase,terminase,transposase,tRNA	Lactococcus_phage(61.54%)	71	2235023:2235040	2267588:2267605
2235023:2235040	attL	AAAGCTGTCAGTAAAATT	NA	NA	NA	NA
WP_011677045.1|2241861_2242272_-	DUF722 domain-containing protein	NA	Q9AZI2	Lactococcus_phage	90.4	3.2e-64
WP_011677046.1|2242268_2242712_-|terminase	terminase small subunit	terminase	Q9AZI3	Lactococcus_phage	83.0	1.3e-58
WP_011677047.1|2242844_2243387_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	82.2	9.3e-51
WP_011677048.1|2243603_2245232_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	91.7	9.2e-296
WP_011677049.1|2245242_2246037_-	hypothetical protein	NA	Q9AZI6	Lactococcus_phage	96.2	6.1e-152
WP_011677050.1|2246033_2246369_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	90.7	2.0e-51
WP_011677052.1|2246616_2246856_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	93.7	2.0e-37
WP_011677053.1|2246898_2247180_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	94.6	1.8e-45
WP_011677054.1|2247176_2247428_-	helix-turn-helix transcriptional regulator	NA	Q9AZJ2	Lactococcus_phage	89.0	5.2e-33
WP_011677055.1|2247424_2248030_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	79.5	4.2e-60
WP_011677056.1|2248034_2248229_-	DUF1655 domain-containing protein	NA	Q9AZF2	Lactococcus_phage	95.3	1.1e-27
WP_011677057.1|2248347_2248596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677058.1|2248599_2248797_-	hypothetical protein	NA	Q9AZJ6	Lactococcus_phage	79.7	8.9e-20
WP_011677059.1|2249055_2249439_+	XRE family transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	70.1	1.4e-45
WP_011677060.1|2249450_2250002_+	hypothetical protein	NA	Q9AZJ8	Lactococcus_phage	79.9	6.2e-87
WP_011677061.1|2250015_2250210_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	96.9	3.9e-28
WP_031286289.1|2250496_2250754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011677063.1|2250869_2252180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011677065.1|2252828_2254010_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	45.2	4.9e-89
WP_011677066.1|2254222_2254849_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_011677067.1|2254881_2255901_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011677068.1|2255893_2256664_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.8	4.9e-29
WP_011677069.1|2256682_2258461_-	glycerophosphodiester phosphodiesterase	NA	A0A076G4Q2	Staphylococcus_phage	27.0	2.0e-09
WP_011677070.1|2258759_2259158_+	HIT family protein	NA	NA	NA	NA	NA
WP_011677071.1|2259172_2259394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014573252.1|2259405_2259750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677073.1|2259827_2260517_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_011677074.1|2260903_2261329_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_011677075.1|2261464_2262229_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011677076.1|2262228_2263107_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	26.4	8.6e-06
WP_011677077.1|2263173_2263383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677078.1|2263416_2263938_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_011677079.1|2264112_2264970_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011677080.1|2265014_2265473_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011677081.1|2265557_2266115_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_004254608.1|2266270_2266987_-	UMP kinase	NA	NA	NA	NA	NA
WP_011677082.1|2267071_2267524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677083.1|2267653_2268841_-	acetate kinase	NA	NA	NA	NA	NA
2267588:2267605	attR	AATTTTACTGACAGCTTT	NA	NA	NA	NA
WP_011677084.1|2268999_2270187_-	acetate kinase	NA	NA	NA	NA	NA
WP_011677085.1|2270378_2271317_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011677086.1|2271404_2271656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031286284.1|2271756_2273589_-	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	35.4	9.2e-18
WP_152023940.1|2273908_2274921_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.1	3.6e-40
WP_011677091.1|2275866_2276757_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011677092.1|2276817_2277276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063282521.1|2277320_2277905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677094.1|2278244_2278973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677095.1|2279165_2279387_+	YqgQ family protein	NA	NA	NA	NA	NA
WP_011677096.1|2279420_2280392_+	ROK family glucokinase	NA	NA	NA	NA	NA
WP_011677097.1|2280394_2280781_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_011677098.1|2280896_2281343_-	DNA starvation/stationary phase protection protein	NA	A0A2K9VCK5	Lactobacillus_phage	33.6	2.5e-17
WP_011677099.1|2281479_2282067_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_011677100.1|2282143_2283034_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011677101.1|2283103_2284198_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011677102.1|2284272_2284764_-|tRNA	prolyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_011677103.1|2284838_2286332_-	amino acid permease	NA	NA	NA	NA	NA
WP_011677104.1|2286521_2287652_-	aminotransferase	NA	NA	NA	NA	NA
WP_011677105.1|2287915_2288860_-	carbamate kinase	NA	NA	NA	NA	NA
WP_011677106.1|2288892_2289837_-	carbamate kinase	NA	NA	NA	NA	NA
WP_011677107.1|2289854_2291435_-	amino acid permease	NA	NA	NA	NA	NA
WP_011677108.1|2291565_2292630_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_081175800.1|2292795_2294028_-	arginine deiminase	NA	NA	NA	NA	NA
WP_011677109.1|2294328_2296023_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	34.2	7.8e-80
WP_004254487.1|2296090_2296549_+	arginine repressor	NA	NA	NA	NA	NA
WP_011677111.1|2296708_2298040_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_011677112.1|2298240_2298840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677113.1|2299003_2302108_-	DEAD/DEAH box helicase family protein	NA	A0A2L1IWL4	Gordonia_phage	30.1	2.4e-42
WP_152023941.1|2302446_2303458_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	36.5	7.3e-41
WP_011677116.1|2305928_2306885_-	serine hydrolase	NA	NA	NA	NA	NA
WP_011677117.1|2306957_2307737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081175803.1|2308186_2309362_-|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	31.9	2.1e-31
>prophage 16
NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	2453581	2368542	2434797	2453581	protease,tRNA,transposase	uncultured_Mediterranean_phage(25.0%)	50	NA	NA
WP_152023942.1|2368542_2369936_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	44.6	2.9e-56
WP_011677177.1|2370008_2370818_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_011677178.1|2370810_2371548_-	metal ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.7	7.0e-17
WP_011677179.1|2371726_2372569_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA	NA
WP_011677180.1|2372565_2373003_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011677181.1|2373082_2373382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041167483.1|2373405_2373852_-	competence protein ComGF	NA	NA	NA	NA	NA
WP_011677183.1|2373814_2374111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677184.1|2374472_2374850_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_011677100.1|2376717_2377608_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011677185.1|2377895_2382803_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	37.2	9.1e-20
WP_011677186.1|2382976_2383279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677187.1|2383437_2384769_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011677188.1|2384784_2386635_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011677189.1|2386704_2387991_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_011677190.1|2388009_2388813_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011677191.1|2388812_2389547_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	37.0	2.6e-16
WP_011677192.1|2389896_2390229_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_011677194.1|2391039_2391519_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_011677195.1|2391894_2393118_+|protease	serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	25.8	2.4e-06
WP_011677196.1|2393239_2394238_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_011677197.1|2394375_2395716_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_011677198.1|2395823_2396048_+	YkuJ family protein	NA	NA	NA	NA	NA
WP_011677199.1|2396186_2397191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014573352.1|2397247_2398000_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_011677201.1|2398207_2400841_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	31.3	3.8e-57
WP_011677202.1|2401102_2401912_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_011677203.1|2401911_2402517_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_011677205.1|2408966_2410697_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_011677206.1|2410901_2411930_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_011677207.1|2412051_2412819_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_011677208.1|2413213_2414239_+	lactonase family protein	NA	NA	NA	NA	NA
WP_011677209.1|2414494_2417206_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_011677211.1|2417669_2418167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677212.1|2418153_2418363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011675620.1|2418650_2419541_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_014573366.1|2419647_2420967_-	KxxxW cyclic peptide radical SAM maturase	NA	NA	NA	NA	NA
WP_011677213.1|2421466_2422498_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_011677214.1|2422481_2422982_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	32.1	2.0e-15
WP_031286167.1|2423029_2423569_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011677216.1|2423739_2424960_-	MFS transporter	NA	NA	NA	NA	NA
WP_050748315.1|2426457_2426952_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_011677218.1|2426975_2428082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011677219.1|2428176_2429523_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_014573374.1|2429866_2430373_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_011677222.1|2430406_2431147_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011677223.1|2431192_2431996_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011677224.1|2432065_2432911_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_021216380.1|2433083_2433416_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011675534.1|2433621_2434797_+|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
