assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002078935.1_ASM207893v1	NZ_CP015901	Lactococcus lactis subsp. cremoris strain JM3 chromosome, complete genome	1	2302179-2302274	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,DinG	Orphan	TCTTCCTCAATCTTCCCAATTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,DinG,RT	NA|200aa|up_1|NZ_CP015901.1_2298240_2298840_-,NA	NA|315aa|up_9|NZ_CP015901.1_2287915_2288860_-	COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism]	NA|315aa|up_8|NZ_CP015901.1_2288892_2289837_-	COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism]	NA|527aa|up_7|NZ_CP015901.1_2289854_2291435_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|355aa|up_6|NZ_CP015901.1_2291565_2292630_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|411aa|up_5|NZ_CP015901.1_2292795_2294028_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|565aa|up_4|NZ_CP015901.1_2294328_2296023_-	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed	NA|153aa|up_3|NZ_CP015901.1_2296090_2296549_+	TIGR01529, Arginine_repressor	NA|444aa|up_2|NZ_CP015901.1_2296708_2298040_-	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|200aa|up_1|NZ_CP015901.1_2298240_2298840_-	NA	NA|1035aa|up_0|NZ_CP015901.1_2299003_2302108_-	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins	NA|338aa|down_0|NZ_CP015901.1_2302446_2303459_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|319aa|down_1|NZ_CP015901.1_2305928_2306885_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|260aa|down_2|NZ_CP015901.1_2306957_2307737_-	pfam14507, CppA_C, CppA C-terminal	NA|392aa|down_3|NZ_CP015901.1_2308186_2309362_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|110aa|down_4|NZ_CP015901.1_2309519_2309849_-	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]	NA|169aa|down_5|NZ_CP015901.1_2309883_2310390_-	COG3467, COG3467, Predicted flavin-nucleotide-binding protein [General function prediction only]	NA|261aa|down_6|NZ_CP015901.1_2310758_2311541_+	pfam02517, Abi, CAAX protease self-immunity	NA|290aa|down_7|NZ_CP015901.1_2311576_2312446_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|764aa|down_8|NZ_CP015901.1_2312617_2314909_+	PRK05371, PRK05371, x-prolyl-dipeptidyl aminopeptidase; Provisional	NA|281aa|down_9|NZ_CP015901.1_2315771_2316614_+	cd13710, PBP2_TcyK, Substrate binding domain of an ABC transporter TcyJKLMN; the type 2 periplasmic binding protein fold
GCF_002078935.1_ASM207893v1	NZ_CP016740	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence	1	4088-4229	1	CRISPRCasFinder	no			Orphan	TAGACATAAAAAAGAAAAGCGTTCTAATCGTTTTTCCTTTTTTATC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,DinG,RT	NA|179aa|up_3|NZ_CP016740.1_1153_1690_+,NA|188aa|down_2|NZ_CP016740.1_6239_6803_-,NA|97aa|down_3|NZ_CP016740.1_6990_7281_+,NA|123aa|down_4|NZ_CP016740.1_7753_8122_+,NA|50aa|down_5|NZ_CP016740.1_8924_9074_+,NA|201aa|down_6|NZ_CP016740.1_9078_9681_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|387aa|up_4|NZ_CP016740.1_0_1161_+	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|179aa|up_3|NZ_CP016740.1_1153_1690_+	NA	NA|184aa|up_2|NZ_CP016740.1_1710_2262_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|227aa|up_1|NZ_CP016740.1_2295_2976_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|222aa|up_0|NZ_CP016740.1_3142_3808_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|227aa|down_0|NZ_CP016740.1_4290_4971_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|222aa|down_1|NZ_CP016740.1_5137_5803_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|188aa|down_2|NZ_CP016740.1_6239_6803_-	NA	NA|97aa|down_3|NZ_CP016740.1_6990_7281_+	NA	NA|123aa|down_4|NZ_CP016740.1_7753_8122_+	NA	NA|50aa|down_5|NZ_CP016740.1_8924_9074_+	NA	NA|201aa|down_6|NZ_CP016740.1_9078_9681_-	NA	NA|389aa|down_7|NZ_CP016740.1_9673_10840_-	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|227aa|down_8|NZ_CP016740.1_12114_12795_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|NA	NA
GCF_002078935.1_ASM207893v1	NZ_CP016740	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence	2	6083-6224	2	CRISPRCasFinder	no			Orphan	TAGACATAAAAAAGAAAAGCGTTCTAATCGTTTTTCCTTTTTTATC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,DinG,RT	NA|179aa|up_5|NZ_CP016740.1_1153_1690_+,NA|188aa|down_0|NZ_CP016740.1_6239_6803_-,NA|97aa|down_1|NZ_CP016740.1_6990_7281_+,NA|123aa|down_2|NZ_CP016740.1_7753_8122_+,NA|50aa|down_3|NZ_CP016740.1_8924_9074_+,NA|201aa|down_4|NZ_CP016740.1_9078_9681_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|387aa|up_6|NZ_CP016740.1_0_1161_+	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|179aa|up_5|NZ_CP016740.1_1153_1690_+	NA	NA|184aa|up_4|NZ_CP016740.1_1710_2262_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|227aa|up_3|NZ_CP016740.1_2295_2976_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|222aa|up_2|NZ_CP016740.1_3142_3808_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|227aa|up_1|NZ_CP016740.1_4290_4971_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|222aa|up_0|NZ_CP016740.1_5137_5803_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|188aa|down_0|NZ_CP016740.1_6239_6803_-	NA	NA|97aa|down_1|NZ_CP016740.1_6990_7281_+	NA	NA|123aa|down_2|NZ_CP016740.1_7753_8122_+	NA	NA|50aa|down_3|NZ_CP016740.1_8924_9074_+	NA	NA|201aa|down_4|NZ_CP016740.1_9078_9681_-	NA	NA|389aa|down_5|NZ_CP016740.1_9673_10840_-	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|227aa|down_6|NZ_CP016740.1_12114_12795_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|NA	NA	NA|NA	NA	NA|NA	NA
