assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	1	146708-146786	1	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|226aa|down_4|NZ_CP016318.1_163541_164219_+	NA|278aa|up_9|NZ_CP016318.1_123735_124569_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP016318.1_124556_125423_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP016318.1_125416_126220_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP016318.1_126251_126983_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP016318.1_127102_127534_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP016318.1_127562_127955_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP016318.1_128412_129165_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP016318.1_141757_142942_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP016318.1_143314_145666_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP016318.1_145687_146227_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP016318.1_159227_160067_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP016318.1_160063_161245_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP016318.1_161548_162451_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP016318.1_162472_163552_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP016318.1_163541_164219_+	NA	NA|72aa|down_5|NZ_CP016318.1_164261_164477_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP016318.1_164505_165585_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP016318.1_165584_166337_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP016318.1_166337_166895_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP016318.1_167064_168411_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	2	148720-148809	2	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	6	148748-148781|148748-148781|148748-148781|148748-148781|148748-148781|148748-148781	NZ_CP016318.1_17851-17884|NZ_CP016318.1_131191-131224|NZ_CP016318.1_138138-138171|NZ_CP016318.1_3109763-3109730|NZ_CP016318.1_12396-12429|NZ_CP016318.1_1216118-1216151	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|226aa|down_4|NZ_CP016318.1_163541_164219_+	NA|278aa|up_9|NZ_CP016318.1_123735_124569_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP016318.1_124556_125423_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP016318.1_125416_126220_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP016318.1_126251_126983_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP016318.1_127102_127534_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP016318.1_127562_127955_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP016318.1_128412_129165_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP016318.1_141757_142942_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP016318.1_143314_145666_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP016318.1_145687_146227_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP016318.1_159227_160067_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP016318.1_160063_161245_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP016318.1_161548_162451_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP016318.1_162472_163552_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP016318.1_163541_164219_+	NA	NA|72aa|down_5|NZ_CP016318.1_164261_164477_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP016318.1_164505_165585_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP016318.1_165584_166337_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP016318.1_166337_166895_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP016318.1_167064_168411_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	3	1130303-1130729	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,6,6	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|300aa|up_8|NZ_CP016318.1_1123843_1124743_+,NA|134aa|up_6|NZ_CP016318.1_1124985_1125387_+,NA|116aa|up_5|NZ_CP016318.1_1125380_1125728_+,NA|146aa|up_3|NZ_CP016318.1_1126145_1126583_+,NA|187aa|down_0|NZ_CP016318.1_1131228_1131789_+	NA|188aa|up_9|NZ_CP016318.1_1123268_1123832_+	pfam06810, Phage_GP20, Phage minor structural protein GP20	NA|300aa|up_8|NZ_CP016318.1_1123843_1124743_+	NA	NA|78aa|up_7|NZ_CP016318.1_1124742_1124976_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_6|NZ_CP016318.1_1124985_1125387_+	NA	NA|116aa|up_5|NZ_CP016318.1_1125380_1125728_+	NA	NA|142aa|up_4|NZ_CP016318.1_1125727_1126153_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_3|NZ_CP016318.1_1126145_1126583_+	NA	NA|437aa|up_2|NZ_CP016318.1_1126753_1128064_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_1|NZ_CP016318.1_1128080_1128551_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_0|NZ_CP016318.1_1128622_1129063_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|187aa|down_0|NZ_CP016318.1_1131228_1131789_+	NA	NA|190aa|down_1|NZ_CP016318.1_1131832_1132402_+	PRK07418, PRK07418, acetolactate synthase large subunit	NA|784aa|down_2|NZ_CP016318.1_1132472_1134824_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NZ_CP016318.1_1134839_1135529_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_4|NZ_CP016318.1_1135521_1137492_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NZ_CP016318.1_1137505_1137766_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NZ_CP016318.1_1137770_1138190_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NZ_CP016318.1_1138190_1139240_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NZ_CP016318.1_1139232_1139850_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_9|NZ_CP016318.1_1139861_1140665_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	4	1130873-1131099	4,2	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,TTTTATATTAACTAAGTGGTATGTAAAG	29,28	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|300aa|up_8|NZ_CP016318.1_1123843_1124743_+,NA|134aa|up_6|NZ_CP016318.1_1124985_1125387_+,NA|116aa|up_5|NZ_CP016318.1_1125380_1125728_+,NA|146aa|up_3|NZ_CP016318.1_1126145_1126583_+,NA|187aa|down_0|NZ_CP016318.1_1131228_1131789_+	NA|188aa|up_9|NZ_CP016318.1_1123268_1123832_+	pfam06810, Phage_GP20, Phage minor structural protein GP20	NA|300aa|up_8|NZ_CP016318.1_1123843_1124743_+	NA	NA|78aa|up_7|NZ_CP016318.1_1124742_1124976_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_6|NZ_CP016318.1_1124985_1125387_+	NA	NA|116aa|up_5|NZ_CP016318.1_1125380_1125728_+	NA	NA|142aa|up_4|NZ_CP016318.1_1125727_1126153_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_3|NZ_CP016318.1_1126145_1126583_+	NA	NA|437aa|up_2|NZ_CP016318.1_1126753_1128064_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_1|NZ_CP016318.1_1128080_1128551_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_0|NZ_CP016318.1_1128622_1129063_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|187aa|down_0|NZ_CP016318.1_1131228_1131789_+	NA	NA|190aa|down_1|NZ_CP016318.1_1131832_1132402_+	PRK07418, PRK07418, acetolactate synthase large subunit	NA|784aa|down_2|NZ_CP016318.1_1132472_1134824_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NZ_CP016318.1_1134839_1135529_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_4|NZ_CP016318.1_1135521_1137492_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NZ_CP016318.1_1137505_1137766_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NZ_CP016318.1_1137770_1138190_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NZ_CP016318.1_1138190_1139240_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NZ_CP016318.1_1139232_1139850_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_9|NZ_CP016318.1_1139861_1140665_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	5	1216153-1216241	5	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTGCGTTAGCACTTTAAGTAACGGAAT	27	1	3	1216180-1216214|1216180-1216214|1216180-1216214	NZ_CP016318.1_131253-131287|NZ_CP016318.1_138200-138234|NZ_CP016318.1_17913-17947	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|638aa|down_2|NZ_CP016318.1_1224623_1226537_+	NA|279aa|up_9|NZ_CP016318.1_1202091_1202928_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|262aa|up_8|NZ_CP016318.1_1202921_1203707_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|351aa|up_7|NZ_CP016318.1_1203706_1204759_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|283aa|up_6|NZ_CP016318.1_1204988_1205837_+	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]	NA|555aa|up_5|NZ_CP016318.1_1205826_1207491_+	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|419aa|up_4|NZ_CP016318.1_1207539_1208796_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|694aa|up_3|NZ_CP016318.1_1208818_1210900_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|362aa|up_2|NZ_CP016318.1_1210936_1212022_+	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|375aa|up_1|NZ_CP016318.1_1212075_1213200_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|325aa|up_0|NZ_CP016318.1_1213277_1214252_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|673aa|down_0|NZ_CP016318.1_1219846_1221865_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|671aa|down_1|NZ_CP016318.1_1222369_1224382_+	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|638aa|down_2|NZ_CP016318.1_1224623_1226537_+	NA	NA|740aa|down_3|NZ_CP016318.1_1226529_1228749_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|277aa|down_4|NZ_CP016318.1_1228857_1229688_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1156aa|down_5|NZ_CP016318.1_1229677_1233145_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1276aa|down_6|NZ_CP016318.1_1233144_1236972_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|404aa|down_7|NZ_CP016318.1_1237017_1238229_+	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD	NA|1176aa|down_8|NZ_CP016318.1_1238215_1241743_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|418aa|down_9|NZ_CP016318.1_1241873_1243127_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	6	1440053-1440936	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,13,13	13	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|52aa|down_0|NZ_CP016318.1_1442119_1442275_+,NA|73aa|down_1|NZ_CP016318.1_1442553_1442772_+,NA|128aa|down_2|NZ_CP016318.1_1443992_1444376_-,NA|115aa|down_3|NZ_CP016318.1_1444502_1444847_+,NA|72aa|down_4|NZ_CP016318.1_1445029_1445245_+,NA|106aa|down_5|NZ_CP016318.1_1446230_1446548_-,NA|65aa|down_8|NZ_CP016318.1_1448933_1449128_-	NA|271aa|up_9|NZ_CP016318.1_1427162_1427975_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|NZ_CP016318.1_1428178_1429504_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NZ_CP016318.1_1429716_1430796_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NZ_CP016318.1_1430967_1431642_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NZ_CP016318.1_1431628_1432876_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|NZ_CP016318.1_1432947_1434612_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|NZ_CP016318.1_1434708_1434993_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|NZ_CP016318.1_1435015_1436533_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|NZ_CP016318.1_1436657_1437479_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|NZ_CP016318.1_1437669_1439097_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|52aa|down_0|NZ_CP016318.1_1442119_1442275_+	NA	NA|73aa|down_1|NZ_CP016318.1_1442553_1442772_+	NA	NA|128aa|down_2|NZ_CP016318.1_1443992_1444376_-	NA	NA|115aa|down_3|NZ_CP016318.1_1444502_1444847_+	NA	NA|72aa|down_4|NZ_CP016318.1_1445029_1445245_+	NA	NA|106aa|down_5|NZ_CP016318.1_1446230_1446548_-	NA	NA|130aa|down_6|NZ_CP016318.1_1447608_1447998_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_7|NZ_CP016318.1_1448322_1448832_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_8|NZ_CP016318.1_1448933_1449128_-	NA	NA|131aa|down_9|NZ_CP016318.1_1449643_1450036_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	7	1650492-1651316	4,7,3	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	11,12,12	12	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|80aa|down_4|NZ_CP016318.1_1658462_1658702_+	NA|419aa|up_9|NZ_CP016318.1_1638611_1639868_+	PRK00549, PRK00549, competence damage-inducible protein A; Provisional	NA|260aa|up_8|NZ_CP016318.1_1639925_1640705_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_7|NZ_CP016318.1_1640798_1641383_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_6|NZ_CP016318.1_1641582_1643013_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_5|NZ_CP016318.1_1643330_1644275_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_4|NZ_CP016318.1_1644545_1645481_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_3|NZ_CP016318.1_1645599_1646193_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_2|NZ_CP016318.1_1646299_1646728_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_1|NZ_CP016318.1_1646794_1647463_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_0|NZ_CP016318.1_1647580_1648936_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|578aa|down_0|NZ_CP016318.1_1651641_1653375_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NZ_CP016318.1_1653614_1654460_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP016318.1_1654490_1656725_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_CP016318.1_1657508_1658318_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP016318.1_1658462_1658702_+	NA	NA|225aa|down_5|NZ_CP016318.1_1659569_1660244_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|122aa|down_6|NZ_CP016318.1_1661094_1661460_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_7|NZ_CP016318.1_1661924_1662710_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|275aa|down_8|NZ_CP016318.1_1662806_1663631_-	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	DinG|1040aa|down_9|NZ_CP016318.1_1663851_1666971_+	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	8	1761576-1762131	5,8,4	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	1	1	1761671-1761706	NZ_CP016318.1_1108944-1108979	I-A:I-A:I-A	8,8,8	8	TypeV	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|190aa|up_7|NZ_CP016318.1_1751447_1752017_+,NA|61aa|up_4|NZ_CP016318.1_1754966_1755149_-,NA|95aa|down_0|NZ_CP016318.1_1762298_1762583_-,NA|330aa|down_5|NZ_CP016318.1_1767032_1768022_+	NA|195aa|up_9|NZ_CP016318.1_1749806_1750391_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|NZ_CP016318.1_1750543_1751443_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP016318.1_1751447_1752017_+	NA	NA|216aa|up_6|NZ_CP016318.1_1752183_1752831_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP016318.1_1753220_1754135_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP016318.1_1754966_1755149_-	NA	NA|283aa|up_3|NZ_CP016318.1_1755578_1756427_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP016318.1_1756445_1757273_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP016318.1_1757247_1758171_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP016318.1_1758823_1760917_+	cd01948, EAL, EAL domain	NA|95aa|down_0|NZ_CP016318.1_1762298_1762583_-	NA	NA|273aa|down_1|NZ_CP016318.1_1762789_1763608_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NZ_CP016318.1_1763740_1765861_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NZ_CP016318.1_1765886_1766114_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NZ_CP016318.1_1766440_1766881_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_5|NZ_CP016318.1_1767032_1768022_+	NA	NA|403aa|down_6|NZ_CP016318.1_1768498_1769707_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NZ_CP016318.1_1769767_1770649_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_8|NZ_CP016318.1_1771034_1771979_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NZ_CP016318.1_1772201_1772747_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	9	1940780-1941793	6,9,5	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	15,15,15	15	TypeV	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|96aa|down_0|NZ_CP016318.1_1942201_1942489_+,NA|341aa|down_5|NZ_CP016318.1_1949559_1950582_+,NA|258aa|down_7|NZ_CP016318.1_1951488_1952262_+	NA|329aa|up_9|NZ_CP016318.1_1922993_1923980_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_8|NZ_CP016318.1_1924463_1926194_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_7|NZ_CP016318.1_1926718_1927234_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_6|NZ_CP016318.1_1928039_1930514_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|NZ_CP016318.1_1930513_1931971_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|NZ_CP016318.1_1932393_1934751_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|NZ_CP016318.1_1934836_1935154_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	cas14j|373aa|up_2|NZ_CP016318.1_1936172_1937291_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_1|NZ_CP016318.1_1937466_1938222_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_0|NZ_CP016318.1_1938861_1940133_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|NZ_CP016318.1_1942201_1942489_+	NA	NA|184aa|down_1|NZ_CP016318.1_1943027_1943579_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NZ_CP016318.1_1943769_1944732_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_CP016318.1_1945026_1946871_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|177aa|down_4|NZ_CP016318.1_1947175_1947706_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|341aa|down_5|NZ_CP016318.1_1949559_1950582_+	NA	NA|296aa|down_6|NZ_CP016318.1_1950595_1951483_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_7|NZ_CP016318.1_1951488_1952262_+	NA	NA|242aa|down_8|NZ_CP016318.1_1952373_1953099_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|down_9|NZ_CP016318.1_1953102_1954506_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	10	2258327-2258494	7	PILER-CR	no	csa3	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Type I-A	AGTTTTATATCAACTATGTGGTATGTAAAGTTTTTA	36	0	0	NA	NA	I-A	2	2	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|133aa|up_2|NZ_CP016318.1_2254836_2255235_-,NA|20aa|down_5|NZ_CP016318.1_2262630_2262690_+	NA|97aa|up_9|NZ_CP016318.1_2244504_2244795_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|119aa|up_8|NZ_CP016318.1_2246078_2246435_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|204aa|up_7|NZ_CP016318.1_2247833_2248445_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|113aa|up_6|NZ_CP016318.1_2248742_2249081_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_5|NZ_CP016318.1_2249487_2250924_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|479aa|up_4|NZ_CP016318.1_2251171_2252608_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|184aa|up_3|NZ_CP016318.1_2253435_2253987_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_2|NZ_CP016318.1_2254836_2255235_-	NA	NA|162aa|up_1|NZ_CP016318.1_2255590_2256076_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|67aa|up_0|NZ_CP016318.1_2257768_2257969_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|61aa|down_0|NZ_CP016318.1_2258719_2258902_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|282aa|down_1|NZ_CP016318.1_2258972_2259818_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|111aa|down_2|NZ_CP016318.1_2260746_2261079_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_3|NZ_CP016318.1_2261322_2261964_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|98aa|down_4|NZ_CP016318.1_2261944_2262238_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|20aa|down_5|NZ_CP016318.1_2262630_2262690_+	NA	NA|251aa|down_6|NZ_CP016318.1_2263205_2263958_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_7|NZ_CP016318.1_2264016_2265672_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|360aa|down_8|NZ_CP016318.1_2266944_2268024_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|219aa|down_9|NZ_CP016318.1_2268107_2268764_-	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	11	2620233-2621184	10,6,8	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,13	14	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|138aa|up_3|NZ_CP016318.1_2616487_2616901_+,NA|99aa|up_2|NZ_CP016318.1_2616919_2617216_+,NA|106aa|up_1|NZ_CP016318.1_2617498_2617816_+,NA|155aa|up_0|NZ_CP016318.1_2617951_2618416_+,NA|108aa|down_1|NZ_CP016318.1_2622993_2623317_-,NA|85aa|down_2|NZ_CP016318.1_2623352_2623607_-,NA|57aa|down_5|NZ_CP016318.1_2627394_2627565_+	NA|234aa|up_9|NZ_CP016318.1_2610894_2611596_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|108aa|up_8|NZ_CP016318.1_2611588_2611912_+	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|687aa|up_7|NZ_CP016318.1_2612117_2614178_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_6|NZ_CP016318.1_2614373_2615066_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_5|NZ_CP016318.1_2615677_2616052_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_4|NZ_CP016318.1_2616270_2616504_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_3|NZ_CP016318.1_2616487_2616901_+	NA	NA|99aa|up_2|NZ_CP016318.1_2616919_2617216_+	NA	NA|106aa|up_1|NZ_CP016318.1_2617498_2617816_+	NA	NA|155aa|up_0|NZ_CP016318.1_2617951_2618416_+	NA	NA|308aa|down_0|NZ_CP016318.1_2621450_2622374_-	pfam09851, SHOCT, Short C-terminal domain	NA|108aa|down_1|NZ_CP016318.1_2622993_2623317_-	NA	NA|85aa|down_2|NZ_CP016318.1_2623352_2623607_-	NA	NA|126aa|down_3|NZ_CP016318.1_2625330_2625708_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_4|NZ_CP016318.1_2626511_2627006_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|57aa|down_5|NZ_CP016318.1_2627394_2627565_+	NA	NA|117aa|down_6|NZ_CP016318.1_2628392_2628743_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_7|NZ_CP016318.1_2628744_2628945_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|67aa|down_8|NZ_CP016318.1_2629668_2629869_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|271aa|down_9|NZ_CP016318.1_2630503_2631316_+	cd13517, PBP2_ModA3_like, Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 periplasmic binding fold superfamily
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	12	2782866-2783023	9	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	AGGTTTAAGATTAACTAAGTGG---------ATTTCA	37	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|492aa|down_3|NZ_CP016318.1_2787448_2788924_-,NA|59aa|down_5|NZ_CP016318.1_2789766_2789943_-	NA|448aa|up_9|NZ_CP016318.1_2775322_2776666_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NZ_CP016318.1_2776678_2776915_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP016318.1_2777127_2777691_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP016318.1_2777883_2778381_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP016318.1_2778491_2778935_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP016318.1_2778964_2779144_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP016318.1_2779306_2779657_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP016318.1_2779699_2780998_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP016318.1_2780999_2781758_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP016318.1_2781776_2782724_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP016318.1_2783164_2785573_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NZ_CP016318.1_2785599_2786397_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|339aa|down_2|NZ_CP016318.1_2786412_2787429_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NZ_CP016318.1_2787448_2788924_-	NA	cas6|246aa|down_4|NZ_CP016318.1_2788928_2789666_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|59aa|down_5|NZ_CP016318.1_2789766_2789943_-	NA	NA|370aa|down_6|NZ_CP016318.1_2790401_2791511_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_7|NZ_CP016318.1_2791540_2792308_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_8|NZ_CP016318.1_2792495_2793869_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_9|NZ_CP016318.1_2793904_2794840_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	13	2864781-2865206	10,11,7	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA	NA|253aa|up_9|NZ_CP016318.1_2853118_2853877_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_8|NZ_CP016318.1_2854007_2855360_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_7|NZ_CP016318.1_2855456_2857007_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_6|NZ_CP016318.1_2857057_2857873_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_5|NZ_CP016318.1_2857893_2858376_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_4|NZ_CP016318.1_2858659_2859040_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|NZ_CP016318.1_2859134_2860352_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|NZ_CP016318.1_2861010_2862639_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|NZ_CP016318.1_2862759_2863755_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_0|NZ_CP016318.1_2863932_2864316_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|457aa|down_0|NZ_CP016318.1_2866008_2867379_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|373aa|down_1|NZ_CP016318.1_2867592_2868711_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_2|NZ_CP016318.1_2869027_2869696_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_3|NZ_CP016318.1_2870549_2872970_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_4|NZ_CP016318.1_2873323_2873674_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_5|NZ_CP016318.1_2873790_2874363_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_6|NZ_CP016318.1_2874363_2875053_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_7|NZ_CP016318.1_2875328_2875967_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_8|NZ_CP016318.1_2876119_2878123_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	NA|214aa|down_9|NZ_CP016318.1_2878296_2878938_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	14	3096794-3097119	12	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|107aa|down_2|NZ_CP016318.1_3099982_3100303_-,NA|664aa|down_3|NZ_CP016318.1_3100292_3102284_-,NA|458aa|down_7|NZ_CP016318.1_3113073_3114447_-	NA|218aa|up_9|NZ_CP016318.1_3081780_3082434_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP016318.1_3082936_3084280_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP016318.1_3084458_3085823_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NZ_CP016318.1_3086000_3087866_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP016318.1_3088101_3089319_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP016318.1_3089518_3090382_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP016318.1_3090463_3092386_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP016318.1_3092464_3093313_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP016318.1_3093725_3094607_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|270aa|up_0|NZ_CP016318.1_3094814_3095624_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP016318.1_3097878_3098892_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|292aa|down_1|NZ_CP016318.1_3098915_3099791_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP016318.1_3099982_3100303_-	NA	NA|664aa|down_3|NZ_CP016318.1_3100292_3102284_-	NA	NA|848aa|down_4|NZ_CP016318.1_3102406_3104950_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_CP016318.1_3105693_3106371_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP016318.1_3111763_3112702_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP016318.1_3113073_3114447_-	NA	NA|441aa|down_8|NZ_CP016318.1_3114675_3115998_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP016318.1_3115990_3116695_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	15	3151752-3151927	13	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	2	2	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|222aa|down_0|NZ_CP016318.1_3153220_3153886_+	NA|205aa|up_9|NZ_CP016318.1_3139780_3140395_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP016318.1_3140409_3140859_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP016318.1_3140883_3143091_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP016318.1_3143164_3143677_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP016318.1_3143689_3146140_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP016318.1_3146152_3147817_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP016318.1_3148114_3148612_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP016318.1_3148640_3150020_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP016318.1_3150324_3150471_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP016318.1_3150500_3151079_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP016318.1_3153220_3153886_+	NA	NA|901aa|down_1|NZ_CP016318.1_3154391_3157094_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP016318.1_3157119_3158670_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP016318.1_3158992_3160705_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP016318.1_3161058_3161319_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP016318.1_3161511_3162723_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP016318.1_3162954_3164688_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP016318.1_3164727_3165126_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP016318.1_3165128_3166676_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP016318.1_3166990_3167896_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	16	3152034-3152323	14	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|222aa|down_0|NZ_CP016318.1_3153220_3153886_+	NA|205aa|up_9|NZ_CP016318.1_3139780_3140395_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP016318.1_3140409_3140859_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP016318.1_3140883_3143091_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP016318.1_3143164_3143677_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP016318.1_3143689_3146140_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP016318.1_3146152_3147817_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP016318.1_3148114_3148612_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP016318.1_3148640_3150020_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP016318.1_3150324_3150471_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP016318.1_3150500_3151079_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP016318.1_3153220_3153886_+	NA	NA|901aa|down_1|NZ_CP016318.1_3154391_3157094_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP016318.1_3157119_3158670_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP016318.1_3158992_3160705_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP016318.1_3161058_3161319_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP016318.1_3161511_3162723_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP016318.1_3162954_3164688_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP016318.1_3164727_3165126_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP016318.1_3165128_3166676_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP016318.1_3166990_3167896_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	17	3152526-3152616	15	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|222aa|down_0|NZ_CP016318.1_3153220_3153886_+	NA|205aa|up_9|NZ_CP016318.1_3139780_3140395_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP016318.1_3140409_3140859_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP016318.1_3140883_3143091_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP016318.1_3143164_3143677_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP016318.1_3143689_3146140_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP016318.1_3146152_3147817_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP016318.1_3148114_3148612_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP016318.1_3148640_3150020_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP016318.1_3150324_3150471_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP016318.1_3150500_3151079_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP016318.1_3153220_3153886_+	NA	NA|901aa|down_1|NZ_CP016318.1_3154391_3157094_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP016318.1_3157119_3158670_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP016318.1_3158992_3160705_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP016318.1_3161058_3161319_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP016318.1_3161511_3162723_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP016318.1_3162954_3164688_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP016318.1_3164727_3165126_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP016318.1_3165128_3166676_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP016318.1_3166990_3167896_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	18	3261177-3261388	16	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TCTTCTGATGGTGGTACTGGAGGATT	26	0	0	NA	NA	NA	3	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|459aa|up_6|NZ_CP016318.1_3252713_3254090_+,NA	NA|169aa|up_9|NZ_CP016318.1_3250104_3250611_-	PRK10519, PRK10519, hypothetical protein; Provisional	NA|216aa|up_8|NZ_CP016318.1_3250612_3251260_-	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|up_7|NZ_CP016318.1_3251273_3252446_-	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|459aa|up_6|NZ_CP016318.1_3252713_3254090_+	NA	NA|177aa|up_5|NZ_CP016318.1_3255025_3255556_-	pfam12641, Flavodoxin_3, Flavodoxin domain	NA|365aa|up_4|NZ_CP016318.1_3255631_3256726_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|149aa|up_3|NZ_CP016318.1_3256727_3257174_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|397aa|up_2|NZ_CP016318.1_3257479_3258670_+	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|321aa|up_1|NZ_CP016318.1_3258839_3259802_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|221aa|up_0|NZ_CP016318.1_3259923_3260586_-	cd20183, M34_PPEP, Pro-Pro endopeptidase (PPEP) and similar proteins; belongs to peptidase family M34	NA|393aa|down_0|NZ_CP016318.1_3264204_3265383_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|925aa|down_1|NZ_CP016318.1_3266007_3268782_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|419aa|down_2|NZ_CP016318.1_3268953_3270210_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|517aa|down_3|NZ_CP016318.1_3270281_3271832_-	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|397aa|down_4|NZ_CP016318.1_3271874_3273065_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|363aa|down_5|NZ_CP016318.1_3273303_3274392_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|233aa|down_6|NZ_CP016318.1_3274676_3275375_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|502aa|down_7|NZ_CP016318.1_3275488_3276994_-	cd16956, HATPase_YehU-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU	NA|424aa|down_8|NZ_CP016318.1_3277409_3278681_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|535aa|down_9|NZ_CP016318.1_3279496_3281101_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	19	3354041-3354268	17,11	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTATATTAACTATGTGGTATGTAAA	29,28	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|187aa|up_0|NZ_CP016318.1_3353350_3353911_-,NA|146aa|down_3|NZ_CP016318.1_3358556_3358994_-,NA|116aa|down_5|NZ_CP016318.1_3359411_3359759_-,NA|134aa|down_6|NZ_CP016318.1_3359752_3360154_-,NA|300aa|down_8|NZ_CP016318.1_3360396_3361296_-	NA|268aa|up_9|NZ_CP016318.1_3344474_3345278_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NZ_CP016318.1_3345289_3345907_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NZ_CP016318.1_3345899_3346949_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NZ_CP016318.1_3346949_3347369_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NZ_CP016318.1_3347373_3347634_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NZ_CP016318.1_3347647_3349618_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NZ_CP016318.1_3349610_3350300_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NZ_CP016318.1_3350315_3352667_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NZ_CP016318.1_3352737_3353307_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NZ_CP016318.1_3353350_3353911_-	NA	NA|147aa|down_0|NZ_CP016318.1_3356076_3356517_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_1|NZ_CP016318.1_3356588_3357059_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_2|NZ_CP016318.1_3357075_3358386_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|146aa|down_3|NZ_CP016318.1_3358556_3358994_-	NA	NA|142aa|down_4|NZ_CP016318.1_3358986_3359412_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_5|NZ_CP016318.1_3359411_3359759_-	NA	NA|134aa|down_6|NZ_CP016318.1_3359752_3360154_-	NA	NA|78aa|down_7|NZ_CP016318.1_3360163_3360397_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|300aa|down_8|NZ_CP016318.1_3360396_3361296_-	NA	NA|188aa|down_9|NZ_CP016318.1_3361307_3361871_-	pfam06810, Phage_GP20, Phage minor structural protein GP20
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	20	3354412-3354837	18,8,12	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,4	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|187aa|up_0|NZ_CP016318.1_3353350_3353911_-,NA|146aa|down_3|NZ_CP016318.1_3358556_3358994_-,NA|116aa|down_5|NZ_CP016318.1_3359411_3359759_-,NA|134aa|down_6|NZ_CP016318.1_3359752_3360154_-,NA|300aa|down_8|NZ_CP016318.1_3360396_3361296_-	NA|268aa|up_9|NZ_CP016318.1_3344474_3345278_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NZ_CP016318.1_3345289_3345907_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NZ_CP016318.1_3345899_3346949_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NZ_CP016318.1_3346949_3347369_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NZ_CP016318.1_3347373_3347634_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NZ_CP016318.1_3347647_3349618_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NZ_CP016318.1_3349610_3350300_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NZ_CP016318.1_3350315_3352667_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NZ_CP016318.1_3352737_3353307_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NZ_CP016318.1_3353350_3353911_-	NA	NA|147aa|down_0|NZ_CP016318.1_3356076_3356517_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_1|NZ_CP016318.1_3356588_3357059_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_2|NZ_CP016318.1_3357075_3358386_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|146aa|down_3|NZ_CP016318.1_3358556_3358994_-	NA	NA|142aa|down_4|NZ_CP016318.1_3358986_3359412_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_5|NZ_CP016318.1_3359411_3359759_-	NA	NA|134aa|down_6|NZ_CP016318.1_3359752_3360154_-	NA	NA|78aa|down_7|NZ_CP016318.1_3360163_3360397_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|300aa|down_8|NZ_CP016318.1_3360396_3361296_-	NA	NA|188aa|down_9|NZ_CP016318.1_3361307_3361871_-	pfam06810, Phage_GP20, Phage minor structural protein GP20
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	21	3412703-3413978	19,9,13	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	19,17,16	19	Unclear	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|67aa|up_7|NZ_CP016318.1_3405596_3405797_+,NA|260aa|up_1|NZ_CP016318.1_3410979_3411759_+,NA	NA|740aa|up_9|NZ_CP016318.1_3399943_3402163_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP016318.1_3402438_3405093_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP016318.1_3405596_3405797_+	NA	NA|197aa|up_6|NZ_CP016318.1_3406003_3406594_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP016318.1_3406596_3407472_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP016318.1_3407547_3408939_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP016318.1_3408942_3410079_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP016318.1_3410110_3410656_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP016318.1_3410979_3411759_+	NA	NA|143aa|up_0|NZ_CP016318.1_3412213_3412642_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP016318.1_3414161_3414428_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP016318.1_3414430_3415411_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NZ_CP016318.1_3415413_3415932_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP016318.1_3415979_3418301_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP016318.1_3418311_3419013_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP016318.1_3419014_3419929_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_CP016318.1_3419930_3421808_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_CP016318.1_3421813_3422551_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP016318.1_3422628_3423546_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP016318.1_3423825_3425742_-	pfam02687, FtsX, FtsX-like permease family
GCF_002080065.1_ASM208006v1	NZ_CP016318	Clostridioides difficile strain 630 delta erm chromosome, complete genome	22	4153024-4153109	20	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	AAAGTGCTAAAGCACGTCGCCAAC	24	1	2	4153048-4153085|4153048-4153085	NZ_CP016318.1_12421-12384|NZ_CP016318.1_3109738-3109775	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|65aa|down_0|NZ_CP016318.1_4154982_4155177_-	NA|477aa|up_9|NZ_CP016318.1_4140749_4142180_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|143aa|up_8|NZ_CP016318.1_4142216_4142645_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|235aa|up_7|NZ_CP016318.1_4142832_4143537_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|278aa|up_6|NZ_CP016318.1_4143559_4144393_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|249aa|up_5|NZ_CP016318.1_4144393_4145140_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|298aa|up_4|NZ_CP016318.1_4145217_4146111_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|312aa|up_3|NZ_CP016318.1_4146107_4147043_-	PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated	NA|230aa|up_2|NZ_CP016318.1_4147045_4147735_-	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|470aa|up_1|NZ_CP016318.1_4147865_4149275_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|64aa|up_0|NZ_CP016318.1_4149429_4149621_-	pfam04070, DUF378, Domain of unknown function (DUF378)	NA|65aa|down_0|NZ_CP016318.1_4154982_4155177_-	NA	NA|510aa|down_1|NZ_CP016318.1_4155485_4157015_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|160aa|down_2|NZ_CP016318.1_4157029_4157509_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|323aa|down_3|NZ_CP016318.1_4157617_4158586_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|257aa|down_4|NZ_CP016318.1_4158722_4159493_-	PRK13318, PRK13318, type III pantothenate kinase	NA|197aa|down_5|NZ_CP016318.1_4159511_4160102_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|323aa|down_6|NZ_CP016318.1_4160285_4161254_-	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|326aa|down_7|NZ_CP016318.1_4161246_4162224_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|657aa|down_8|NZ_CP016318.1_4162538_4164509_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|463aa|down_9|NZ_CP016318.1_4164542_4165931_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain
