assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002080475.1_ASM208047v1	NZ_CP020559	Clostridium formicaceticum strain DSM 92 chromosome, complete genome	1	1347744-1348827	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	Type I-B	ATTGAACCTCAACATAGGATGTATTTAAAT,ATTGAACCTCAACATAGGATGTATTTAAAT,ATTGAACCTCAACATAGGATGTATTTAAAT	30,30,30	0	0	NA	NA	II-B:II-B:II-B	15,16,16	16	TypeI-B	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	NA,NA	NA|1635aa|up_9|NZ_CP020559.1_1332521_1337426_-	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]	NA|306aa|up_8|NZ_CP020559.1_1337588_1338506_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	cas6|232aa|up_7|NZ_CP020559.1_1338946_1339642_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|574aa|up_6|NZ_CP020559.1_1339653_1341375_+	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas7b|325aa|up_5|NZ_CP020559.1_1341377_1342352_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|251aa|up_4|NZ_CP020559.1_1342354_1343107_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|862aa|up_3|NZ_CP020559.1_1343154_1345740_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas4|164aa|up_2|NZ_CP020559.1_1345748_1346240_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|333aa|up_1|NZ_CP020559.1_1346249_1347248_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|97aa|up_0|NZ_CP020559.1_1347248_1347539_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|792aa|down_0|NZ_CP020559.1_1349011_1351387_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|157aa|down_1|NZ_CP020559.1_1351407_1351878_+	pfam04463, DUF523, Protein of unknown function (DUF523)	NA|364aa|down_2|NZ_CP020559.1_1351948_1353040_-	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|865aa|down_3|NZ_CP020559.1_1353345_1355940_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|350aa|down_4|NZ_CP020559.1_1355932_1356982_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|417aa|down_5|NZ_CP020559.1_1357239_1358490_+	TIGR03407, urea_ABC_UrtA, urea ABC transporter, urea binding protein	NA|303aa|down_6|NZ_CP020559.1_1358585_1359494_+	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|364aa|down_7|NZ_CP020559.1_1359508_1360600_+	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|252aa|down_8|NZ_CP020559.1_1360607_1361363_+	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|231aa|down_9|NZ_CP020559.1_1361365_1362058_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE
GCF_002080475.1_ASM208047v1	NZ_CP020559	Clostridium formicaceticum strain DSM 92 chromosome, complete genome	2	2530794-2532610	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	Unclear	ATTTACATTCTACTGTAGTTCTATTAAAGG,ATTTACATTCTACTGTAGTTCTATTAAAGG,ATTTACATTCTACTGTAGTTCTATTAAAGG	30,30,30	0	0	NA	NA	NA:NA:NA	27,27,26	27	Unclear	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	NA|104aa|up_8|NZ_CP020559.1_2516881_2517193_-,NA	NA|398aa|up_9|NZ_CP020559.1_2515647_2516841_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|104aa|up_8|NZ_CP020559.1_2516881_2517193_-	NA	NA|194aa|up_7|NZ_CP020559.1_2517227_2517809_-	pfam10080, DUF2318, Predicted membrane protein (DUF2318)	NA|405aa|up_6|NZ_CP020559.1_2518412_2519627_+	cd00548, NrfA-like, cytochrome c nitrite reductase and similar proteins	NA|430aa|up_5|NZ_CP020559.1_2519681_2520971_+	pfam05140, ResB, ResB-like family	NA|277aa|up_4|NZ_CP020559.1_2520988_2521819_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|713aa|up_3|NZ_CP020559.1_2521943_2524082_-	PRK11249, katE, hydroperoxidase II; Provisional	NA|198aa|up_2|NZ_CP020559.1_2524460_2525054_+	COG5663, COG5663, Uncharacterized conserved protein [Function unknown]	NA|431aa|up_1|NZ_CP020559.1_2525215_2526508_+	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|1188aa|up_0|NZ_CP020559.1_2526756_2530320_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	cas2|93aa|down_0|NZ_CP020559.1_2532795_2533074_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_1|NZ_CP020559.1_2533078_2534071_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_2|NZ_CP020559.1_2534080_2534572_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|744aa|down_3|NZ_CP020559.1_2534602_2536834_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|252aa|down_4|NZ_CP020559.1_2536856_2537612_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|295aa|down_5|NZ_CP020559.1_2537598_2538483_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|557aa|down_6|NZ_CP020559.1_2538482_2540153_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|243aa|down_7|NZ_CP020559.1_2540165_2540894_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	WYL|316aa|down_8|NZ_CP020559.1_2540994_2541942_-	pfam13280, WYL, WYL domain	NA|207aa|down_9|NZ_CP020559.1_2542121_2542742_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]
GCF_002080475.1_ASM208047v1	NZ_CP020559	Clostridium formicaceticum strain DSM 92 chromosome, complete genome	3	3005799-3005891	3	CRISPRCasFinder	no	RT	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	Unclear	AAACACATTATCATTTCCTCCTTTCTTGCGTG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	NA,NA	NA|194aa|up_9|NZ_CP020559.1_2997366_2997948_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|264aa|up_8|NZ_CP020559.1_2998013_2998805_-	PRK07475, PRK07475, hypothetical protein; Provisional	NA|66aa|up_7|NZ_CP020559.1_2998922_2999120_-	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|376aa|up_6|NZ_CP020559.1_2999142_3000270_-	pfam01314, AFOR_C, Aldehyde ferredoxin oxidoreductase, domains 2 & 3	NA|309aa|up_5|NZ_CP020559.1_3000303_3001230_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|301aa|up_4|NZ_CP020559.1_3001367_3002270_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|398aa|up_3|NZ_CP020559.1_3002299_3003493_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|87aa|up_2|NZ_CP020559.1_3003489_3003750_-	cd19946, GlpA-like_Fer2_BFD-like, bacterioferritin-associated ferredoxin (BFD)-like [2Fe-2S]-binding domain of anaerobic glycerol 3-phosphate dehydrogenase subunit A, hydrogen cyanide synthase subunit B, and similar proteins	NA|165aa|up_1|NZ_CP020559.1_3003847_3004342_-	COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]	NA|372aa|up_0|NZ_CP020559.1_3004371_3005487_-	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|568aa|down_0|NZ_CP020559.1_3006178_3007882_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|357aa|down_1|NZ_CP020559.1_3008510_3009581_-	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain	NA|465aa|down_2|NZ_CP020559.1_3009954_3011349_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|294aa|down_3|NZ_CP020559.1_3011680_3012562_+	smart00257, LysM, Lysin motif	NA|599aa|down_4|NZ_CP020559.1_3013111_3014908_-	cd01454, vWA_norD_type, norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases	NA|308aa|down_5|NZ_CP020559.1_3014921_3015845_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|97aa|down_6|NZ_CP020559.1_3016221_3016512_-	pfam09308, LuxQ-periplasm, LuxQ, periplasmic	NA|230aa|down_7|NZ_CP020559.1_3016561_3017251_-	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|236aa|down_8|NZ_CP020559.1_3017269_3017977_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|443aa|down_9|NZ_CP020559.1_3018042_3019371_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA
GCF_002080475.1_ASM208047v1	NZ_CP020559	Clostridium formicaceticum strain DSM 92 chromosome, complete genome	4	3611877-3611939	4	CRISPRCasFinder	no	WYL,Cas14u_CAS-V	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	Unclear	ATCAAAACGTCCCCTTGGCTTATG	24	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	NA|313aa|up_9|NZ_CP020559.1_3600681_3601620_-,NA|91aa|up_5|NZ_CP020559.1_3606503_3606776_+,NA|502aa|up_4|NZ_CP020559.1_3606845_3608351_-,NA|245aa|down_2|NZ_CP020559.1_3613812_3614547_+,NA|407aa|down_9|NZ_CP020559.1_3621785_3623006_-	NA|313aa|up_9|NZ_CP020559.1_3600681_3601620_-	NA	NA|84aa|up_8|NZ_CP020559.1_3601785_3602037_-	pfam12787, EcsC, EcsC protein family	NA|130aa|up_7|NZ_CP020559.1_3602033_3602423_-	pfam12787, EcsC, EcsC protein family	NA|872aa|up_6|NZ_CP020559.1_3603109_3605725_-	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	NA|91aa|up_5|NZ_CP020559.1_3606503_3606776_+	NA	NA|502aa|up_4|NZ_CP020559.1_3606845_3608351_-	NA	NA|464aa|up_3|NZ_CP020559.1_3608351_3609743_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|236aa|up_2|NZ_CP020559.1_3609739_3610447_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|270aa|up_1|NZ_CP020559.1_3610646_3611456_+	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|142aa|up_0|NZ_CP020559.1_3611405_3611831_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|75aa|down_0|NZ_CP020559.1_3611964_3612189_+	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|459aa|down_1|NZ_CP020559.1_3612206_3613583_+	cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes	NA|245aa|down_2|NZ_CP020559.1_3613812_3614547_+	NA	NA|410aa|down_3|NZ_CP020559.1_3615190_3616420_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|267aa|down_4|NZ_CP020559.1_3616409_3617210_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|336aa|down_5|NZ_CP020559.1_3617210_3618218_-	pfam01032, FecCD, FecCD transport family	NA|329aa|down_6|NZ_CP020559.1_3618219_3619206_-	pfam01032, FecCD, FecCD transport family	NA|318aa|down_7|NZ_CP020559.1_3619192_3620146_-	cd01138, FeuA, Periplasmic binding protein FeuA	NA|334aa|down_8|NZ_CP020559.1_3620450_3621452_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|407aa|down_9|NZ_CP020559.1_3621785_3623006_-	NA
GCF_002080475.1_ASM208047v1	NZ_CP020559	Clostridium formicaceticum strain DSM 92 chromosome, complete genome	5	4056365-4056456	5	CRISPRCasFinder	no	cas14k	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	Unclear	AAAATTACAATAAAGTTCACCGAA	24	0	0	NA	NA	NA	1	1	TypeV	cas3,csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK	NA|113aa|up_7|NZ_CP020559.1_4043598_4043937_-,NA|166aa|down_3|NZ_CP020559.1_4062241_4062739_-	NA|536aa|up_9|NZ_CP020559.1_4041556_4043164_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|117aa|up_8|NZ_CP020559.1_4043254_4043605_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|113aa|up_7|NZ_CP020559.1_4043598_4043937_-	NA	NA|601aa|up_6|NZ_CP020559.1_4044017_4045820_-	pfam00665, rve, Integrase core domain	NA|272aa|up_5|NZ_CP020559.1_4045834_4046650_-	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal	NA|313aa|up_4|NZ_CP020559.1_4046880_4047819_-	pfam15978, TnsD, Tn7-like transposition protein D	NA|874aa|up_3|NZ_CP020559.1_4048908_4051530_-	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|549aa|up_2|NZ_CP020559.1_4051532_4053179_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|475aa|up_1|NZ_CP020559.1_4053440_4054865_-	pfam18134, AGS_C, Adenylyl/Guanylyl and SMODS C-terminal sensor domain	NA|384aa|up_0|NZ_CP020559.1_4054882_4056034_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|609aa|down_0|NZ_CP020559.1_4056810_4058637_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|449aa|down_1|NZ_CP020559.1_4059050_4060397_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|540aa|down_2|NZ_CP020559.1_4060587_4062207_-	pfam02554, CstA, Carbon starvation protein CstA	NA|166aa|down_3|NZ_CP020559.1_4062241_4062739_-	NA	cas14k|421aa|down_4|NZ_CP020559.1_4062862_4064125_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|182aa|down_5|NZ_CP020559.1_4065064_4065610_-	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|249aa|down_6|NZ_CP020559.1_4065611_4066358_-	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|355aa|down_7|NZ_CP020559.1_4066357_4067422_-	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|75aa|down_8|NZ_CP020559.1_4067449_4067674_-	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	NA|224aa|down_9|NZ_CP020559.1_4067702_4068374_-	cd02042, ParAB_family, partition proteins ParAB family
