assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	1	433781-433881	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP020619.1_425353_425563_-,NA|128aa|up_7|NZ_CP020619.1_426387_426771_-,NA|98aa|up_5|NZ_CP020619.1_427724_428018_-,NA|34aa|up_0|NZ_CP020619.1_433005_433107_+,NA|221aa|down_1|NZ_CP020619.1_434971_435634_-,NA|179aa|down_7|NZ_CP020619.1_441725_442262_-	NA|70aa|up_9|NZ_CP020619.1_425353_425563_-	NA	NA|194aa|up_8|NZ_CP020619.1_425740_426322_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP020619.1_426387_426771_-	NA	NA|209aa|up_6|NZ_CP020619.1_427025_427652_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP020619.1_427724_428018_-	NA	NA|508aa|up_4|NZ_CP020619.1_428096_429620_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP020619.1_429635_430205_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP020619.1_430696_431452_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP020619.1_431532_432921_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP020619.1_433005_433107_+	NA	NA|319aa|down_0|NZ_CP020619.1_433897_434854_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP020619.1_434971_435634_-	NA	NA|136aa|down_2|NZ_CP020619.1_435776_436184_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP020619.1_436696_437275_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP020619.1_437274_438543_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP020619.1_438580_440047_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP020619.1_440071_441613_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP020619.1_441725_442262_-	NA	NA|235aa|down_8|NZ_CP020619.1_442654_443359_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP020619.1_443757_444030_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	2	678120-678212	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP020619.1_674604_674712_+,NA|169aa|down_4|NZ_CP020619.1_681959_682466_+,NA|239aa|down_5|NZ_CP020619.1_682627_683344_+	NA|313aa|up_9|NZ_CP020619.1_668806_669745_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP020619.1_669955_670492_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP020619.1_670660_671137_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP020619.1_671176_672472_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP020619.1_672499_673021_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP020619.1_673519_674530_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP020619.1_674604_674712_+	NA	NA|128aa|up_2|NZ_CP020619.1_674837_675221_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP020619.1_675217_676879_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP020619.1_677266_677902_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP020619.1_678340_679168_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP020619.1_679315_680266_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP020619.1_680320_681040_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP020619.1_681023_681824_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP020619.1_681959_682466_+	NA	NA|239aa|down_5|NZ_CP020619.1_682627_683344_+	NA	NA|263aa|down_6|NZ_CP020619.1_683512_684301_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP020619.1_684551_684926_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP020619.1_686641_687178_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP020619.1_687158_687662_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	3	849414-849499	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	849444-849469|849444-849469|849444-849469|849444-849469|849444-849469	NZ_CP020619.1_812406-812381|NZ_CP020619.1_2831322-2831347|NZ_CP020619.1_2831378-2831403|NZ_CP020619.1_812462-812437|NZ_CP020619.1_955435-955410	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP020619.1_836666_837506_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP020619.1_837679_838330_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP020619.1_838326_838563_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP020619.1_838831_840817_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP020619.1_840824_843671_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP020619.1_844332_845265_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP020619.1_845270_846110_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP020619.1_846117_846603_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP020619.1_846610_848050_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP020619.1_848116_849052_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP020619.1_849931_850843_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP020619.1_850839_851835_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP020619.1_851944_852889_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP020619.1_853462_854050_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP020619.1_854292_855195_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP020619.1_855896_856526_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP020619.1_857167_858181_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP020619.1_858233_859244_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP020619.1_859382_860573_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP020619.1_860694_861456_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	4	892625-892706	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	892649-892682|892649-892682	NZ_CP020619.1_1381642-1381609|NZ_CP020619.1_1470801-1470834	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP020619.1_891527_891641_+,NA	NA|206aa|up_9|NZ_CP020619.1_886382_887000_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP020619.1_887154_887649_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP020619.1_888047_888470_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP020619.1_888617_889334_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP020619.1_889416_889956_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP020619.1_890105_890426_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP020619.1_890569_890926_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP020619.1_891083_891464_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP020619.1_891527_891641_+	NA	NA|293aa|up_0|NZ_CP020619.1_891642_892521_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP020619.1_893262_893649_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP020619.1_893641_893938_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP020619.1_894187_895213_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP020619.1_895205_895901_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP020619.1_895918_896740_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP020619.1_896882_898103_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP020619.1_898190_898919_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP020619.1_898942_899671_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP020619.1_899687_900146_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP020619.1_900157_900490_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	5	955436-955718	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	955466-955491|955466-955491|955466-955491|955466-955491|955580-955605|955580-955605	NZ_CP020619.1_955410-955435|NZ_CP020619.1_812381-812406|NZ_CP020619.1_2831347-2831322|NZ_CP020619.1_2831403-2831378|NZ_CP020619.1_849525-849500|NZ_CP020619.1_395114-395139	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP020619.1_944324_945821_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP020619.1_945813_946143_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP020619.1_946154_946583_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP020619.1_946575_948981_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP020619.1_949111_949495_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP020619.1_949558_950152_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP020619.1_950567_950945_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP020619.1_951306_952434_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP020619.1_952741_953932_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP020619.1_954040_955285_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP020619.1_955787_956717_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP020619.1_956958_958338_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP020619.1_958327_959533_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP020619.1_959883_961215_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP020619.1_961539_962115_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP020619.1_962119_962644_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP020619.1_962659_963235_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP020619.1_963394_966871_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP020619.1_966871_970525_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP020619.1_970690_971593_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	6	1089108-1089195	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP020619.1_1088984_1089104_+,NA|45aa|down_0|NZ_CP020619.1_1089204_1089339_-,NA|432aa|down_1|NZ_CP020619.1_1089490_1090786_+	NA|730aa|up_9|NZ_CP020619.1_1077562_1079752_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP020619.1_1079730_1081215_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP020619.1_1081207_1082236_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP020619.1_1082238_1082805_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP020619.1_1082819_1084298_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP020619.1_1084319_1085567_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP020619.1_1085831_1086638_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP020619.1_1086630_1088031_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP020619.1_1088045_1088621_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP020619.1_1088984_1089104_+	NA	NA|45aa|down_0|NZ_CP020619.1_1089204_1089339_-	NA	NA|432aa|down_1|NZ_CP020619.1_1089490_1090786_+	NA	NA|391aa|down_2|NZ_CP020619.1_1091210_1092383_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP020619.1_1092436_1092979_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP020619.1_1093132_1093399_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP020619.1_1093401_1095120_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP020619.1_1095356_1095590_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP020619.1_1095787_1097149_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP020619.1_1097145_1098165_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP020619.1_1098297_1098960_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	7	2031142-2031220	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2031165-2031197|2031165-2031197|2031165-2031197|2031165-2031197|2031165-2031197|2031165-2031197	NZ_CP020619.1_849480-849512|NZ_CP020619.1_1173471-1173439|NZ_CP020619.1_1381596-1381564|NZ_CP020619.1_1696080-1696112|NZ_CP020619.1_2665972-2666004|NZ_CP020619.1_1470847-1470879	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP020619.1_2025336_2025612_+,NA|129aa|up_1|NZ_CP020619.1_2029597_2029984_-,NA|138aa|down_1|NZ_CP020619.1_2032962_2033376_-,NA|37aa|down_2|NZ_CP020619.1_2033404_2033515_-,NA|31aa|down_6|NZ_CP020619.1_2036520_2036613_-	NA|419aa|up_9|NZ_CP020619.1_2023259_2024516_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP020619.1_2024518_2024719_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP020619.1_2024865_2025330_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP020619.1_2025336_2025612_+	NA	NA|406aa|up_5|NZ_CP020619.1_2025889_2027107_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP020619.1_2027222_2027852_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP020619.1_2027841_2028885_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP020619.1_2028881_2029583_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP020619.1_2029597_2029984_-	NA	NA|253aa|up_0|NZ_CP020619.1_2030200_2030959_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP020619.1_2031486_2032473_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP020619.1_2032962_2033376_-	NA	NA|37aa|down_2|NZ_CP020619.1_2033404_2033515_-	NA	NA|244aa|down_3|NZ_CP020619.1_2033600_2034332_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP020619.1_2034333_2035647_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP020619.1_2035938_2036439_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP020619.1_2036520_2036613_-	NA	DEDDh|185aa|down_7|NZ_CP020619.1_2036827_2037382_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP020619.1_2037449_2038520_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP020619.1_2038766_2039297_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	8	2266095-2266245	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP020619.1_2260966_2261197_-,NA|364aa|up_0|NZ_CP020619.1_2264985_2266077_+,NA|35aa|down_0|NZ_CP020619.1_2266576_2266681_-,NA|31aa|down_2|NZ_CP020619.1_2268792_2268885_+	NA|237aa|up_9|NZ_CP020619.1_2256576_2257287_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP020619.1_2257407_2257851_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP020619.1_2258050_2258464_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP020619.1_2258921_2260295_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP020619.1_2260966_2261197_-	NA	NA|313aa|up_4|NZ_CP020619.1_2261227_2262166_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP020619.1_2262600_2263266_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP020619.1_2263417_2263738_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP020619.1_2263739_2264720_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP020619.1_2264985_2266077_+	NA	NA|35aa|down_0|NZ_CP020619.1_2266576_2266681_-	NA	NA|379aa|down_1|NZ_CP020619.1_2267367_2268504_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP020619.1_2268792_2268885_+	NA	NA|286aa|down_3|NZ_CP020619.1_2269589_2270447_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP020619.1_2270514_2271297_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP020619.1_2271528_2273334_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP020619.1_2274014_2275553_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP020619.1_2275587_2277720_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP020619.1_2277731_2278166_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP020619.1_2278165_2279272_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002085525.1_ASM208552v1	NZ_CP020619	Staphylococcus aureus strain JE2 chromosome, complete genome	9	2390012-2390205	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	12	2390035-2390067|2390035-2390067|2390035-2390067|2390035-2390067|2390035-2390067|2390091-2390126|2390091-2390126|2390091-2390126|2390150-2390182|2390150-2390182|2390150-2390182|2390150-2390182	NZ_CP020619.1_849480-849512|NZ_CP020619.1_1173471-1173439|NZ_CP020619.1_1381596-1381564|NZ_CP020619.1_1470847-1470879|NZ_CP020619.1_2665972-2666004|NZ_CP020619.1_1173418-1173383|NZ_CP020619.1_1696019-1696054|NZ_CP020619.1_2041968-2042003|NZ_CP020619.1_849480-849512|NZ_CP020619.1_1173471-1173439|NZ_CP020619.1_1381596-1381564|NZ_CP020619.1_2665972-2666004	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP020619.1_2380539_2380704_+,NA|106aa|up_8|NZ_CP020619.1_2380948_2381266_+,NA|84aa|up_5|NZ_CP020619.1_2386390_2386642_+,NA|57aa|up_0|NZ_CP020619.1_2389781_2389952_+,NA	NA|55aa|up_9|NZ_CP020619.1_2380539_2380704_+	NA	NA|106aa|up_8|NZ_CP020619.1_2380948_2381266_+	NA	NA|1056aa|up_7|NZ_CP020619.1_2381452_2384620_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP020619.1_2384736_2386002_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP020619.1_2386390_2386642_+	NA	NA|255aa|up_4|NZ_CP020619.1_2386633_2387398_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP020619.1_2387559_2388000_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP020619.1_2387992_2389204_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP020619.1_2389305_2389656_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP020619.1_2389781_2389952_+	NA	NA|341aa|down_0|NZ_CP020619.1_2390346_2391369_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP020619.1_2391388_2391988_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP020619.1_2391994_2392228_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP020619.1_2392233_2392680_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP020619.1_2392693_2393179_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP020619.1_2393175_2394435_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP020619.1_2394497_2394992_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP020619.1_2394993_2395500_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP020619.1_2395530_2396535_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP020619.1_2396704_2397310_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
