The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	706731	714551	2793232		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|706731_707787_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|707786_708473_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|708447_708921_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|709261_709702_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|709982_710567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|710665_711379_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|711382_711802_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_084568166.1|711803_712472_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	1.8e-64
WP_000604516.1|712822_713416_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|713399_714551_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	726521	740837	2793232		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|726521_727580_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|727738_728281_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|729017_729935_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|730025_730133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|730204_731710_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|732049_732550_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|732569_733436_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|734237_734636_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|734598_736704_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|736823_737795_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|738164_739136_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|739122_740079_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|740075_740837_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 3
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	828323	873885	2793232	terminase,portal,holin,integrase,plate,head,tail,capsid	Staphylococcus_phage(78.12%)	66	823184:823199	880822:880837
823184:823199	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
WP_001825559.1|828323_829574_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.3e-111
WP_001010508.1|829563_830028_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|830178_831576_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_084568171.1|831643_832693_-|integrase	site-specific integrase	integrase	Q4ZBG5	Staphylococcus_virus	99.4	1.1e-201
WP_000337826.1|832805_832985_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000392186.1|832964_833897_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000874710.1|833928_834567_-	LexA family transcriptional regulator	NA	A0A0E3TAG1	Staphylococcus_phage	100.0	8.8e-117
WP_001106625.1|834756_835011_+	helix-turn-helix transcriptional regulator	NA	B7T095	Staphylococcus_virus	100.0	1.8e-41
WP_033843167.1|835026_835344_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	81.2	1.4e-38
WP_031901046.1|835498_836287_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.6	2.7e-144
WP_001148857.1|836303_836498_+	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	98.4	3.3e-19
WP_000939503.1|836528_836672_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	91.3	1.8e-14
WP_000388992.1|836692_837250_-	hypothetical protein	NA	A0A2H4IYS4	uncultured_Caudovirales_phage	54.5	1.7e-47
WP_000977381.1|837320_837542_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_072498442.1|837534_837696_+	DUF1270 family protein	NA	A0A2I6PD92	Staphylococcus_phage	86.8	2.0e-17
WP_000165375.1|837790_838117_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
WP_000291503.1|838097_838358_+	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_001205732.1|838366_838630_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_084568172.1|840584_841505_+	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	99.7	8.6e-166
WP_071621397.1|841585_842203_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_017466775.1|842203_842674_+	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	96.8	5.3e-79
WP_070956221.1|842703_843555_+	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	95.2	3.6e-134
WP_000338528.1|843561_843780_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_029052043.1|843788_844193_+	RusA family crossover junction endodeoxyribonuclease	NA	I1W657	Staphylococcus_phage	100.0	1.4e-72
WP_000101275.1|844205_844574_+	hypothetical protein	NA	I1W656	Staphylococcus_phage	100.0	6.3e-51
WP_072467409.1|844577_844820_+	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	95.0	2.1e-39
WP_113624722.1|844828_845197_+	acetyltransferase	NA	A0ZS31	Staphylococcus_virus	96.7	1.1e-60
WP_084568173.1|845189_845438_+	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	97.6	1.2e-37
WP_000185680.1|845430_845967_+	hypothetical protein	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_000195803.1|846003_846210_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000141180.1|846206_846410_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608275.1|846402_846639_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000592202.1|846631_847018_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000595257.1|847014_847188_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000286968.1|847188_847590_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594088.1|847942_848437_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037578.1|848429_849653_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000177422.1|849649_851074_+|portal	phage portal protein	portal	Q4ZBZ7	Staphylococcus_virus	100.0	6.2e-272
WP_000184133.1|851042_851996_+|capsid	minor capsid protein	capsid	A0A0N7E0U6	Staphylococcus_phage	99.7	6.6e-177
WP_000346033.1|851997_852204_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_001019219.1|852306_852891_+	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000235168.1|852907_853822_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000002931.1|853833_853977_+	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000177351.1|853982_854333_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000483041.1|854344_854680_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_001151330.1|854666_855080_+	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	100.0	1.1e-75
WP_000270192.1|855092_855518_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_000057582.1|855518_856076_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_031833107.1|856142_856649_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	99.4	4.5e-92
WP_000880587.1|856693_856978_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_000379454.1|856981_860125_+	hypothetical protein	NA	Q4ZBY3	Staphylococcus_virus	100.0	0.0e+00
WP_000560181.1|860139_861081_+|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
WP_001122001.1|861091_862978_+	peptidase	NA	Q4ZBQ3	Staphylococcus_phage	100.0	0.0e+00
WP_000323257.1|862990_864889_+	hypothetical protein	NA	Q4ZBX7	Staphylococcus_virus	99.8	0.0e+00
WP_084568174.1|864888_866712_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.5	0.0e+00
WP_000705920.1|866711_867089_+	DUF2977 domain-containing protein	NA	Q4ZBX4	Staphylococcus_virus	99.2	2.4e-53
WP_001790193.1|867092_867266_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|867306_867606_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_061659776.1|867742_869617_+	CHAP domain-containing protein	NA	Q4ZB20	Staphylococcus_virus	99.0	0.0e+00
WP_084568175.1|869629_870802_+|plate	BppU family phage baseplate upper protein	plate	A9CRD3	Staphylococcus_phage	99.2	1.4e-197
WP_000398860.1|870807_871203_+	hypothetical protein	NA	Q8SDS9	Staphylococcus_phage	100.0	1.6e-68
WP_015990326.1|871258_871696_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	100.0	1.4e-73
WP_084568176.1|871676_873122_+	CHAP domain-containing protein	NA	Q4ZDT0	Staphylococcus_virus	99.2	1.0e-293
WP_001788502.1|873364_873517_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|873587_873698_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|873684_873885_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
880822:880837	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
>prophage 4
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	955518	1007532	2793232	holin,bacteriocin,tRNA,protease	Streptococcus_phage(40.0%)	53	NA	NA
WP_000448934.1|955518_956508_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|956802_957198_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|957568_958288_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|958408_959395_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|959442_961251_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896697.1|961710_962517_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|962539_962905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224612.1|963008_963602_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|963787_964135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|964151_964787_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|964803_965613_+	NAD kinase	NA	NA	NA	NA	NA
WP_084568181.1|965609_966464_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|966484_967870_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|967879_969724_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933200.1|970001_970772_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|970968_972054_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|972395_973964_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|974105_974864_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|975057_975567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|975679_976888_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|976847_978023_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|978453_979938_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|979918_980179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049947.1|980178_981741_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|982042_982846_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_084568182.1|983064_985389_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.1	8.1e-11
WP_000021872.1|985405_986764_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|986902_988414_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|988902_989472_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|989681_989900_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|989980_990967_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|991165_991342_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|991356_991959_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|992258_992336_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|992970_993255_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|993298_995263_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|995265_995586_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571192.1|995582_996224_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_001796515.1|996311_996602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157958947.1|996691_996880_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|996968_997325_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081332.1|997815_998775_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001794249.1|998823_998955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001825521.1|999018_999309_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_000620945.1|999398_999950_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1000000_1000939_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_072357920.1|1001089_1001167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807807.1|1001270_1002482_+	isochorismate synthase	NA	NA	NA	NA	NA
WP_000526673.1|1002468_1004142_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150215.1|1004128_1004932_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1004924_1005746_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284455.1|1005983_1006313_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088778.1|1006350_1007532_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 5
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1027315	1035788	2793232		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|1027315_1027798_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|1027784_1028909_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|1028912_1029617_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|1029616_1029880_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1029881_1030553_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|1030545_1032735_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000483707.1|1032713_1034198_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|1034190_1035219_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1035221_1035788_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 6
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1293213	1299968	2793232	capsid	Staphylococcus_phage(71.43%)	11	NA	NA
WP_001807853.1|1293213_1293411_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|1294097_1294325_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|1294620_1294827_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|1295527_1295638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1296030_1296216_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477489.1|1296726_1297143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033855983.1|1297266_1297530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|1297574_1298159_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|1298222_1298396_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
WP_000585092.1|1298807_1299059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074347678.1|1299128_1299968_+|capsid	minor capsid protein	capsid	A0A1J0MFV1	Staphylococcus_phage	50.7	1.1e-29
>prophage 7
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1475049	1557328	2793232	terminase,portal,holin,integrase,plate,head,tail,capsid,tRNA,protease	Staphylococcus_phage(85.33%)	101	1511440:1511460	1557333:1557353
WP_000858789.1|1475049_1476342_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_084568193.1|1476663_1479357_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.3	1.1e-46
WP_000049916.1|1479380_1480352_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_084568194.1|1480338_1481541_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	7.1e-35
WP_000690021.1|1481545_1482688_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1482931_1483249_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_031774809.1|1483583_1484264_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154694.1|1484335_1484923_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005220.1|1484912_1485488_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	1.6e-08
WP_072434806.1|1485501_1486605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245908.1|1486752_1488051_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776339.1|1488060_1489125_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269939.1|1489150_1490317_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1490703_1490904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1491109_1491559_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_016169114.1|1491650_1492595_-	heptaprenyl diphosphate synthase component II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774681.1|1492611_1493337_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1493339_1493912_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1494342_1494615_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161737.1|1494785_1495784_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1495800_1497111_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1497332_1498508_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001825307.1|1498764_1498956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001807839.1|1499072_1499189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644390.1|1499219_1499879_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681742.1|1499955_1500924_+	asparaginase	NA	NA	NA	NA	NA
WP_001174257.1|1501038_1502025_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001807838.1|1502185_1502302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069278.1|1502427_1503882_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902104.1|1504034_1505414_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
WP_001163801.1|1505403_1506357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1506464_1506713_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186909.1|1506818_1507364_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001825312.1|1507767_1508700_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001807840.1|1509154_1510051_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_084568195.1|1510105_1511035_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061390271.1|1511125_1511377_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
1511440:1511460	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1511559_1512543_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1512538_1513477_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1513866_1515321_-	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1515331_1515634_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1515769_1516069_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1516114_1516279_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1516271_1516661_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1516660_1518127_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1518126_1520037_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179865.1|1520052_1520343_-	hypothetical protein	NA	A0A2I6PET3	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1520342_1521926_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1521934_1522759_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003424.1|1522758_1528959_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_000438833.1|1528972_1529131_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1529172_1529523_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1529580_1530036_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1530127_1530769_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1530803_1531199_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1531199_1531601_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1531597_1531930_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1531941_1532220_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1532288_1533452_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1533463_1534237_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1534220_1535459_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1535463_1537155_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1537144_1537450_-|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1537576_1537891_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1538047_1538485_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001793488.1|1538497_1539865_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665203.1|1539845_1540136_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1540269_1540368_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1540476_1542924_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1543211_1543412_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1543479_1543632_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1543628_1544015_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1544007_1544244_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1544236_1544440_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1544436_1544643_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1544679_1545216_-	hypothetical protein	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1545208_1545457_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1545471_1545714_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1545728_1545929_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1545931_1546189_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1546188_1546590_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1546589_1546775_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1546787_1548740_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1548807_1549365_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1549390_1550557_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1550553_1550916_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1550929_1551190_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_084568196.1|1551194_1551497_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	99.0	2.0e-47
WP_000829612.1|1551489_1551807_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001285951.1|1551899_1552061_-	DUF1270 domain-containing protein	NA	A0A2I6PEK6	Staphylococcus_phage	100.0	1.1e-20
WP_001124198.1|1552072_1552336_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1552360_1552576_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_103146194.1|1552622_1552862_+	hypothetical protein	NA	A0A2I6PEP1	Staphylococcus_phage	100.0	8.8e-38
WP_001115060.1|1553118_1553310_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1553470_1553800_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525000.1|1553812_1554274_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
WP_000755718.1|1554291_1554726_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449655.1|1554754_1555150_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1555239_1555386_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1555382_1555997_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1556122_1557328_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
1557333:1557353	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
>prophage 8
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1618079	1626391	2793232	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1618079_1618865_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1618990_1619881_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062171.1|1619890_1621237_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683941.1|1621350_1622451_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1622453_1623131_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1623261_1624368_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1624591_1626391_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1695815	1704858	2793232	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1695815_1696334_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|1696355_1698629_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|1698831_1701111_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1701385_1701646_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1701664_1702804_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|1702826_1703852_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|1703853_1704858_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1839793	1876438	2793232	transposase,protease	Staphylococcus_phage(90.91%)	43	NA	NA
WP_084568210.1|1839793_1840747_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|1840743_1841307_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|1841425_1841827_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1842399_1843227_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1843229_1843349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1843460_1844462_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|1844589_1845048_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|1845060_1846242_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|1846252_1846885_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384182.1|1846891_1847923_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261673.1|1848415_1849918_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1850560_1850875_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|1850874_1852167_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|1852253_1853108_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1853383_1853608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|1853806_1854277_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|1854389_1854833_+	competence protein ComK	NA	NA	NA	NA	NA
WP_084568211.1|1854819_1855263_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	2.4e-49
WP_001168915.1|1855560_1856196_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|1856362_1856983_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1857545_1858259_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1858517_1858820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|1859074_1859440_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|1859436_1859790_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|1860039_1860873_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|1861084_1861993_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|1862117_1863311_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|1863682_1865275_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|1865571_1866318_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|1866322_1866796_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1866861_1867119_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|1867115_1868117_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|1868121_1869600_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|1869758_1870214_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|1870516_1871179_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|1871259_1872255_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|1872330_1872957_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|1872997_1873342_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|1873439_1874012_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|1874209_1874767_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|1875137_1875314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|1875324_1875708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|1876156_1876438_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 11
NZ_CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1968874	2064587	2793232	terminase,portal,holin,transposase,integrase,head,tail,capsid,tRNA,protease	Staphylococcus_phage(81.25%)	115	2028261:2028278	2054450:2054467
WP_000170162.1|1968874_1969177_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_084568214.1|1969543_1971082_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1971170_1972370_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774571.1|1972382_1974386_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	4.4e-114
WP_000992924.1|1974389_1976582_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272065.1|1976578_1977271_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1977442_1977745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1977853_1979149_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827738.1|1979997_1981164_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434536.1|1981194_1981518_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1981810_1981984_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1981964_1982567_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040870.1|1982836_1983658_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
WP_084568215.1|1983650_1985120_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	7.0e-109
WP_000897642.1|1985303_1986380_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177819.1|1986399_1987194_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1987265_1987373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323172.1|1987383_1988946_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275718.1|1989150_1990248_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1990619_1991180_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1991232_1992162_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001826057.1|1992354_1992528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021224.1|1992579_1993959_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181321.1|1994078_1995107_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1995377_1995779_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1995835_1996009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188070.1|1996459_1997500_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713062.1|1997556_1998399_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|1998395_1998953_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966291.1|1999012_1999537_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1999657_2000221_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221650.1|2000284_2001025_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2001024_2001897_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645735.1|2001893_2002574_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991294.1|2002574_2003471_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
WP_000691584.1|2003467_2003848_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|2004105_2004282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2004523_2004622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068535.1|2004821_2006108_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669725.1|2006378_2008448_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2009405_2009585_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2009895_2010156_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_084568216.1|2010208_2010559_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	99.1	2.9e-53
WP_000727649.1|2011243_2011693_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|2011787_2012246_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|2012772_2013264_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2013454_2014210_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2014221_2014476_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2014527_2014635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2014687_2014864_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2015013_2015310_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_084568217.1|2015367_2015655_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	98.9	8.4e-43
WP_001153681.1|2015701_2015854_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2015843_2019629_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|2019644_2021129_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_084568218.1|2021125_2025655_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	99.1	0.0e+00
WP_020977041.1|2025711_2025873_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	98.1	7.7e-22
WP_001096355.1|2025899_2026250_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2026299_2026524_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|2026565_2027210_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2027210_2027618_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|2027614_2028019_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2028015_2028378_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2028261:2028278	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2028361_2028646_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2028635_2028920_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2028939_2030085_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2030108_2030846_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2030829_2032017_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2032032_2033694_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2033690_2034035_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|2034164_2034464_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2034695_2035112_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265041.1|2035139_2035340_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001005262.1|2035339_2035990_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_070030217.1|2036148_2036298_-	transcriptional regulator	NA	Q4ZBC6	Staphylococcus_virus	82.5	2.0e-16
WP_031768021.1|2036310_2036769_-	hypothetical protein	NA	Q4ZBC7	Staphylococcus_virus	96.1	1.6e-75
WP_031768020.1|2036761_2036914_-	DUF1381 domain-containing protein	NA	Q4ZBC8	Staphylococcus_virus	96.0	1.3e-18
WP_031866561.1|2036950_2037460_-	dUTP pyrophosphatase	NA	A9CR88	Staphylococcus_phage	98.8	3.6e-89
WP_000028421.1|2037452_2037635_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	98.3	1.0e-25
WP_084568219.1|2037624_2037876_-	DUF1024 family protein	NA	A0A1W6JPK6	Staphylococcus_phage	98.8	2.1e-37
WP_113624722.1|2037868_2038237_-	acetyltransferase	NA	A0ZS31	Staphylococcus_virus	96.7	1.1e-60
WP_072467409.1|2038245_2038488_-	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	95.0	2.1e-39
WP_000101275.1|2038491_2038860_-	hypothetical protein	NA	I1W656	Staphylococcus_phage	100.0	6.3e-51
WP_029052043.1|2038872_2039277_-	RusA family crossover junction endodeoxyribonuclease	NA	I1W657	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2039285_2039504_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_070956221.1|2039510_2040362_-	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	95.2	3.6e-134
WP_017466775.1|2040391_2040862_-	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	96.8	5.3e-79
WP_071621397.1|2040862_2041480_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_084568172.1|2041560_2042481_-	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	99.7	8.6e-166
WP_084568220.1|2042482_2044426_-	AAA family ATPase	NA	A0EWX0	Staphylococcus_phage	98.9	0.0e+00
WP_001205732.1|2044434_2044698_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291488.1|2044706_2044967_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_084568221.1|2045059_2045221_-	DUF1270 family protein	NA	A0A2I6PDF7	Staphylococcus_phage	98.1	1.6e-19
WP_001120197.1|2045217_2045538_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2045596_2046229_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2046243_2046384_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2046414_2046612_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148341.1|2046627_2047383_-	oxidoreductase	NA	A0A1P8L6G2	Staphylococcus_phage	100.0	3.3e-139
WP_000351243.1|2047439_2047979_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2048002_2048263_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000639927.1|2048276_2048519_-	DUF739 family protein	NA	Q9G038	Staphylococcus_virus	100.0	2.8e-39
WP_001083967.1|2048682_2049399_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
WP_000121214.1|2049747_2050695_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.9e-184
WP_000705248.1|2051387_2051570_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2051669_2052134_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_084568224.1|2052192_2053230_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	99.7	1.0e-178
WP_000595612.1|2054372_2055389_-	beta-channel forming cytolysin	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
2054450:2054467	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791397.1|2055410_2056466_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
WP_000206618.1|2056897_2058121_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045074.1|2058503_2059811_+	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_025174349.1|2060349_2060691_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	47.8	3.3e-22
WP_000201398.1|2060972_2061152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000240642.1|2061692_2063309_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2063384_2063669_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197638.1|2063843_2064587_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
