assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002101335.1_ASM210133v1	NZ_CP020773	Staphylococcus lutrae strain ATCC 700373 chromosome, complete genome	1	324108-324247	1	CRISPRCasFinder	no		cas3,RT,DEDDh,cas2,cas1,WYL,cas9,csa3,DinG	Orphan	AAAATGGAGCGGAAGATAGGACTTGCACCTATACCTCTTTCC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas2,cas1,WYL,cas9,csa3,DinG	NA,NA	NA|244aa|up_9|NZ_CP020773.1_311407_312139_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|487aa|up_8|NZ_CP020773.1_312131_313592_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|353aa|up_7|NZ_CP020773.1_313797_314856_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|460aa|up_6|NZ_CP020773.1_315088_316468_-	pfam03642, MAP, MAP domain	NA|96aa|up_5|NZ_CP020773.1_318270_318558_+	pfam01527, HTH_Tnp_1, Transposase	NA|84aa|up_4|NZ_CP020773.1_318605_318857_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|377aa|up_3|NZ_CP020773.1_318828_319958_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|200aa|up_2|NZ_CP020773.1_320038_320638_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|516aa|up_1|NZ_CP020773.1_320897_322445_+	pfam02037, SAP, SAP domain	NA|447aa|up_0|NZ_CP020773.1_322548_323889_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|440aa|down_0|NZ_CP020773.1_332101_333421_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|153aa|down_1|NZ_CP020773.1_333465_333924_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_2|NZ_CP020773.1_334005_334956_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|153aa|down_3|NZ_CP020773.1_334962_335421_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|429aa|down_4|NZ_CP020773.1_335503_336790_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_5|NZ_CP020773.1_336883_337978_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|531aa|down_6|NZ_CP020773.1_338115_339708_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|579aa|down_7|NZ_CP020773.1_339961_341698_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_8|NZ_CP020773.1_342034_342577_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|351aa|down_9|NZ_CP020773.1_342638_343691_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
GCF_002101335.1_ASM210133v1	NZ_CP020773	Staphylococcus lutrae strain ATCC 700373 chromosome, complete genome	2	588031-588524	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1	cas3,RT,DEDDh,cas2,cas1,WYL,cas9,csa3,DinG	Unclear	GTTTTACTTCTTTCTAAAAAATCATAGTACTAAAAC,GTTTTACTTCTTTCTAAAAAATCATAGTACTAAAAC,GTTTTACTTCTTTCTAAAAAATCATAGTACTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	7,7,6	7	Unclear	cas3,RT,DEDDh,cas2,cas1,WYL,cas9,csa3,DinG	NA,NA|283aa|down_0|NZ_CP020773.1_588652_589501_-	NA|333aa|up_9|NZ_CP020773.1_576112_577111_-	COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|359aa|up_8|NZ_CP020773.1_577179_578256_-	cd06815, PLPDE_III_AR_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1	NA|588aa|up_7|NZ_CP020773.1_578259_580023_-	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|397aa|up_6|NZ_CP020773.1_580000_581191_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|654aa|up_5|NZ_CP020773.1_581291_583253_+	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|387aa|up_4|NZ_CP020773.1_583396_584557_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|162aa|up_3|NZ_CP020773.1_584849_585335_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|82aa|up_2|NZ_CP020773.1_585390_585636_-	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|183aa|up_1|NZ_CP020773.1_585648_586197_-	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|337aa|up_0|NZ_CP020773.1_586528_587539_-	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|283aa|down_0|NZ_CP020773.1_588652_589501_-	NA	cas2|98aa|down_1|NZ_CP020773.1_589497_589791_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|292aa|down_2|NZ_CP020773.1_589831_590707_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|468aa|down_3|NZ_CP020773.1_595126_596530_-	PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional	NA|577aa|down_4|NZ_CP020773.1_596547_598278_-	TIGR00394, lac_pts_IIC, phosphotransferase system, lactose specific, IIC component	NA|105aa|down_5|NZ_CP020773.1_598283_598598_-	TIGR00823, PTS_system_lactose-specific_IIA_component, phosphotransferase system enzyme II, lactose-specific, factor III	NA|324aa|down_6|NZ_CP020773.1_598621_599593_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|172aa|down_7|NZ_CP020773.1_599662_600178_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|down_8|NZ_CP020773.1_600192_600621_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|251aa|down_9|NZ_CP020773.1_600813_601566_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
GCF_002101335.1_ASM210133v1	NZ_CP020773	Staphylococcus lutrae strain ATCC 700373 chromosome, complete genome	3	1522665-1523230	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	cas3,RT,DEDDh,cas2,cas1,WYL,cas9,csa3,DinG	 Type II-B,Type II-A,Type II-C,Type II-B, or Type II-C?	GTTTTAGTACTCTGTTATTTTAGGTATAAGTGATACA,GTTTTAGTACTCTGTTATTTTAGGTATAAGTGATACA,GTTTTAGTACTCTGTTATTTTAGGTATAAGTGATACA	37,37,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeII-B,TypeII-C,TypeII-A,TypeII-B,orTypeII-C?	cas3,RT,DEDDh,cas2,cas1,WYL,cas9,csa3,DinG	NA,NA|332aa|down_3|NZ_CP020773.1_1527925_1528921_+	NA|264aa|up_9|NZ_CP020773.1_1499908_1500700_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|124aa|up_8|NZ_CP020773.1_1500689_1501061_+	pfam02152, FolB, Dihydroneopterin aldolase	NA|162aa|up_7|NZ_CP020773.1_1501053_1501539_+	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|331aa|up_6|NZ_CP020773.1_1501583_1502576_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|496aa|up_5|NZ_CP020773.1_1502598_1504086_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|440aa|up_4|NZ_CP020773.1_1516053_1517373_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|645aa|up_3|NZ_CP020773.1_1517550_1519485_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|471aa|up_2|NZ_CP020773.1_1519540_1520953_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|296aa|up_1|NZ_CP020773.1_1521061_1521949_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|187aa|up_0|NZ_CP020773.1_1521950_1522511_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	cas9|1055aa|down_0|NZ_CP020773.1_1523533_1526698_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|301aa|down_1|NZ_CP020773.1_1526697_1527600_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|down_2|NZ_CP020773.1_1527604_1527913_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|332aa|down_3|NZ_CP020773.1_1527925_1528921_+	NA	NA|402aa|down_4|NZ_CP020773.1_1529003_1530209_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|154aa|down_5|NZ_CP020773.1_1530372_1530834_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|177aa|down_6|NZ_CP020773.1_1530848_1531379_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|335aa|down_7|NZ_CP020773.1_1531368_1532373_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|820aa|down_8|NZ_CP020773.1_1532388_1534848_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|456aa|down_9|NZ_CP020773.1_1535321_1536689_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional
