assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002105555.1_ASM210555v1	NZ_CP020612	Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T chromosome, complete genome	1	975756-975849	1	CRISPRCasFinder	no		WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	Orphan	GCCCTCGTAGACATCGCCATTGGC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	NA,NA	NA|102aa|up_9|NZ_CP020612.1_963158_963464_-	cd13831, HU, histone-like DNA-binding protein HU	NA|495aa|up_8|NZ_CP020612.1_963675_965160_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|330aa|up_7|NZ_CP020612.1_965240_966230_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|289aa|up_6|NZ_CP020612.1_966226_967093_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|630aa|up_5|NZ_CP020612.1_967238_969128_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|265aa|up_4|NZ_CP020612.1_969431_970226_-	PRK09134, PRK09134, SDR family oxidoreductase	NA|273aa|up_3|NZ_CP020612.1_970339_971158_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|521aa|up_2|NZ_CP020612.1_971258_972821_-	pfam02167, Cytochrom_C1, Cytochrome C1 family	NA|442aa|up_1|NZ_CP020612.1_972835_974161_-	MTH00191, CYTB, cytochrome b; Provisional	NA|191aa|up_0|NZ_CP020612.1_974171_974744_-	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit	NA|553aa|down_0|NZ_CP020612.1_977091_978750_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|97aa|down_1|NZ_CP020612.1_978789_979080_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|69aa|down_2|NZ_CP020612.1_979232_979439_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|230aa|down_3|NZ_CP020612.1_979540_980230_+	TIGR02396, conserved_hypothetical_protein, rpsU-divergently transcribed protein	NA|344aa|down_4|NZ_CP020612.1_980226_981258_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|201aa|down_5|NZ_CP020612.1_981461_982064_-	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far	NA|246aa|down_6|NZ_CP020612.1_982264_983002_+	pfam06242, DUF1013, Protein of unknown function (DUF1013)	NA|464aa|down_7|NZ_CP020612.1_983032_984424_+	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|295aa|down_8|NZ_CP020612.1_984589_985474_+	pfam11316, Rhamno_transf, Putative rhamnosyl transferase	NA|303aa|down_9|NZ_CP020612.1_988328_989237_-	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]
GCF_002105555.1_ASM210555v1	NZ_CP020612	Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T chromosome, complete genome	2	976170-976263	2	CRISPRCasFinder	no		WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	Orphan	GCCCTCGTAGACATCGCCATTGGC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	NA,NA	NA|102aa|up_9|NZ_CP020612.1_963158_963464_-	cd13831, HU, histone-like DNA-binding protein HU	NA|495aa|up_8|NZ_CP020612.1_963675_965160_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|330aa|up_7|NZ_CP020612.1_965240_966230_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|289aa|up_6|NZ_CP020612.1_966226_967093_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|630aa|up_5|NZ_CP020612.1_967238_969128_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|265aa|up_4|NZ_CP020612.1_969431_970226_-	PRK09134, PRK09134, SDR family oxidoreductase	NA|273aa|up_3|NZ_CP020612.1_970339_971158_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|521aa|up_2|NZ_CP020612.1_971258_972821_-	pfam02167, Cytochrom_C1, Cytochrome C1 family	NA|442aa|up_1|NZ_CP020612.1_972835_974161_-	MTH00191, CYTB, cytochrome b; Provisional	NA|191aa|up_0|NZ_CP020612.1_974171_974744_-	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit	NA|553aa|down_0|NZ_CP020612.1_977091_978750_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|97aa|down_1|NZ_CP020612.1_978789_979080_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|69aa|down_2|NZ_CP020612.1_979232_979439_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|230aa|down_3|NZ_CP020612.1_979540_980230_+	TIGR02396, conserved_hypothetical_protein, rpsU-divergently transcribed protein	NA|344aa|down_4|NZ_CP020612.1_980226_981258_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|201aa|down_5|NZ_CP020612.1_981461_982064_-	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far	NA|246aa|down_6|NZ_CP020612.1_982264_983002_+	pfam06242, DUF1013, Protein of unknown function (DUF1013)	NA|464aa|down_7|NZ_CP020612.1_983032_984424_+	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|295aa|down_8|NZ_CP020612.1_984589_985474_+	pfam11316, Rhamno_transf, Putative rhamnosyl transferase	NA|303aa|down_9|NZ_CP020612.1_988328_989237_-	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]
GCF_002105555.1_ASM210555v1	NZ_CP020612	Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T chromosome, complete genome	3	976515-976676	3	CRISPRCasFinder	no		WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	Orphan	GCCCTCGTAGACATCGCCATTGGC	24	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	NA,NA	NA|102aa|up_9|NZ_CP020612.1_963158_963464_-	cd13831, HU, histone-like DNA-binding protein HU	NA|495aa|up_8|NZ_CP020612.1_963675_965160_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|330aa|up_7|NZ_CP020612.1_965240_966230_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|289aa|up_6|NZ_CP020612.1_966226_967093_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|630aa|up_5|NZ_CP020612.1_967238_969128_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|265aa|up_4|NZ_CP020612.1_969431_970226_-	PRK09134, PRK09134, SDR family oxidoreductase	NA|273aa|up_3|NZ_CP020612.1_970339_971158_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|521aa|up_2|NZ_CP020612.1_971258_972821_-	pfam02167, Cytochrom_C1, Cytochrome C1 family	NA|442aa|up_1|NZ_CP020612.1_972835_974161_-	MTH00191, CYTB, cytochrome b; Provisional	NA|191aa|up_0|NZ_CP020612.1_974171_974744_-	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit	NA|553aa|down_0|NZ_CP020612.1_977091_978750_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|97aa|down_1|NZ_CP020612.1_978789_979080_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|69aa|down_2|NZ_CP020612.1_979232_979439_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|230aa|down_3|NZ_CP020612.1_979540_980230_+	TIGR02396, conserved_hypothetical_protein, rpsU-divergently transcribed protein	NA|344aa|down_4|NZ_CP020612.1_980226_981258_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|201aa|down_5|NZ_CP020612.1_981461_982064_-	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far	NA|246aa|down_6|NZ_CP020612.1_982264_983002_+	pfam06242, DUF1013, Protein of unknown function (DUF1013)	NA|464aa|down_7|NZ_CP020612.1_983032_984424_+	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|295aa|down_8|NZ_CP020612.1_984589_985474_+	pfam11316, Rhamno_transf, Putative rhamnosyl transferase	NA|303aa|down_9|NZ_CP020612.1_988328_989237_-	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]
GCF_002105555.1_ASM210555v1	NZ_CP020612	Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T chromosome, complete genome	4	1910194-1911099	1,1,4	PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas7,cas8c,cas5,cas3	WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	Type I-C,Type I-U, Type I-U?	GTTTCGATCCACGCCCCCCTGCGGGAGGCGAC,GTTTCGATCCACGCCCCCCTGCGGGAGGCGACNN,GTTTCGATCCACGCCCCCCTGCGGGAGGCGAC	32,34,32	0	0	NA	NA	NA:NA:NA	13,13,10	13	TypeI-C,TypeI-U?,TypeI-U	WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	NA|47aa|up_1|NZ_CP020612.1_1909169_1909310_-,NA|92aa|up_0|NZ_CP020612.1_1909661_1909937_-,NA	NA|334aa|up_9|NZ_CP020612.1_1898139_1899141_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|502aa|up_8|NZ_CP020612.1_1899137_1900643_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|274aa|up_7|NZ_CP020612.1_1900639_1901461_-	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|248aa|up_6|NZ_CP020612.1_1901492_1902236_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|253aa|up_5|NZ_CP020612.1_1902374_1903133_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|280aa|up_4|NZ_CP020612.1_1903698_1904538_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|551aa|up_3|NZ_CP020612.1_1904534_1906187_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|672aa|up_2|NZ_CP020612.1_1906814_1908830_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|47aa|up_1|NZ_CP020612.1_1909169_1909310_-	NA	NA|92aa|up_0|NZ_CP020612.1_1909661_1909937_-	NA	cas2|97aa|down_0|NZ_CP020612.1_1911281_1911572_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|309aa|down_1|NZ_CP020612.1_1911573_1912500_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|56aa|down_2|NZ_CP020612.1_1912606_1912774_-	pfam07411, DUF1508, Domain of unknown function (DUF1508)	cas7|304aa|down_3|NZ_CP020612.1_1913037_1913949_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|623aa|down_4|NZ_CP020612.1_1913945_1915814_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|233aa|down_5|NZ_CP020612.1_1915810_1916509_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|742aa|down_6|NZ_CP020612.1_1916810_1919036_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|113aa|down_7|NZ_CP020612.1_1920506_1920845_-	pfam17782, DprA_WH, DprA winged helix domain	NA|473aa|down_8|NZ_CP020612.1_1921994_1923413_-	PRK10735, tldD, protease TldD; Provisional	NA|287aa|down_9|NZ_CP020612.1_1923603_1924464_+	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II
GCF_002105555.1_ASM210555v1	NZ_CP020612	Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T chromosome, complete genome	5	2538223-2538908	5,2	CRISPRCasFinder,PILER-CR	no		WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	Orphan	CCTCGTCGCGCTGTGCCTCGGCTGCGG,GGCGGCGGCGGTCTCGTCACGCTGCGCCTCGGTCGCGGCAAGCCGCTCG	27,49	1	3	2538866-2538883|2538866-2538883|2538866-2538883	NZ_CP020612.1_36048-36065|NZ_CP020612.1_1508248-1508231|NZ_CP020612.1_2914119-2914136	NA:NA	12,2	12	Orphan	WYL,DEDDh,cas2,cas1,cas7,cas8c,cas5,cas3,csa3	NA|154aa|up_3|NZ_CP020612.1_2532635_2533097_-,NA|293aa|up_0|NZ_CP020612.1_2535113_2535992_-,NA	NA|527aa|up_9|NZ_CP020612.1_2523753_2525334_+	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	NA|766aa|up_8|NZ_CP020612.1_2525457_2527755_+	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein	NA|160aa|up_7|NZ_CP020612.1_2527815_2528295_-	COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism]	NA|651aa|up_6|NZ_CP020612.1_2528449_2530402_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|103aa|up_5|NZ_CP020612.1_2530519_2530828_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|581aa|up_4|NZ_CP020612.1_2530824_2532567_+	PRK09395, actP, cation/acetate symporter ActP	NA|154aa|up_3|NZ_CP020612.1_2532635_2533097_-	NA	NA|240aa|up_2|NZ_CP020612.1_2533162_2533882_-	pfam05099, TerB, Tellurite resistance protein TerB	NA|367aa|up_1|NZ_CP020612.1_2534016_2535117_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|293aa|up_0|NZ_CP020612.1_2535113_2535992_-	NA	NA|459aa|down_0|NZ_CP020612.1_2539945_2541322_-	PRK06105, PRK06105, aminotransferase; Provisional	NA|436aa|down_1|NZ_CP020612.1_2541584_2542892_+	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|730aa|down_2|NZ_CP020612.1_2543348_2545538_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|170aa|down_3|NZ_CP020612.1_2545636_2546146_-	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]	NA|104aa|down_4|NZ_CP020612.1_2546419_2546731_+	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region	NA|157aa|down_5|NZ_CP020612.1_2546745_2547216_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|249aa|down_6|NZ_CP020612.1_2547514_2548261_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|334aa|down_7|NZ_CP020612.1_2548455_2549457_-	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|119aa|down_8|NZ_CP020612.1_2549610_2549967_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|271aa|down_9|NZ_CP020612.1_2550069_2550882_+	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases
