assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002105675.1_ASM210567v1	NZ_CP020831	Listeria monocytogenes strain PNUSAL000144 chromosome, complete genome	1	510546-511130	1	CRT	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Orphan	GATGTAAGTNATTTTGATACNAGTTCNGTAACTNATATG	39	1	1	510975-511013	NZ_CP020831.1_508770-508808	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|158aa|down_0|NZ_CP020831.1_512023_512497_+,NA|162aa|down_1|NZ_CP020831.1_512516_513002_+,NA|89aa|down_3|NZ_CP020831.1_513410_513677_+,NA|123aa|down_5|NZ_CP020831.1_514502_514871_+,NA|65aa|down_6|NZ_CP020831.1_516049_516244_+,NA|91aa|down_7|NZ_CP020831.1_516265_516538_+,NA|116aa|down_8|NZ_CP020831.1_516565_516913_+,NA|81aa|down_9|NZ_CP020831.1_517316_517559_+	NA|252aa|up_9|NZ_CP020831.1_494305_495061_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP020831.1_495178_497338_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP020831.1_497334_498483_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP020831.1_498487_499435_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP020831.1_499590_501186_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP020831.1_501319_502603_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP020831.1_502603_503704_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP020831.1_503696_505247_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP020831.1_505893_507432_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|690aa|up_0|NZ_CP020831.1_507683_509753_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP020831.1_512023_512497_+	NA	NA|162aa|down_1|NZ_CP020831.1_512516_513002_+	NA	NA|102aa|down_2|NZ_CP020831.1_513029_513335_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP020831.1_513410_513677_+	NA	NA|95aa|down_4|NZ_CP020831.1_514217_514502_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_5|NZ_CP020831.1_514502_514871_+	NA	NA|65aa|down_6|NZ_CP020831.1_516049_516244_+	NA	NA|91aa|down_7|NZ_CP020831.1_516265_516538_+	NA	NA|116aa|down_8|NZ_CP020831.1_516565_516913_+	NA	NA|81aa|down_9|NZ_CP020831.1_517316_517559_+	NA
GCF_002105675.1_ASM210567v1	NZ_CP020831	Listeria monocytogenes strain PNUSAL000144 chromosome, complete genome	2	548919-549401	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAG---TTACTTATTTTGAA----ATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT	36,29,29	0	0	NA	NA	NA:I-A:I-A	7,7,7	7	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|133aa|up_5|NZ_CP020831.1_543908_544307_+,NA|193aa|down_0|NZ_CP020831.1_549792_550371_+	NA|217aa|up_9|NZ_CP020831.1_539971_540622_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP020831.1_540730_542791_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP020831.1_542794_543397_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP020831.1_543424_543892_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP020831.1_543908_544307_+	NA	NA|217aa|up_4|NZ_CP020831.1_544317_544968_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP020831.1_544964_546011_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP020831.1_546026_546320_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP020831.1_546334_547606_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP020831.1_547745_548681_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP020831.1_549792_550371_+	NA	NA|227aa|down_1|NZ_CP020831.1_550476_551157_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP020831.1_551181_551541_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP020831.1_551547_552006_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP020831.1_552387_554223_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP020831.1_554323_554755_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP020831.1_554801_556232_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP020831.1_556352_557168_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP020831.1_557519_558242_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NZ_CP020831.1_558257_559946_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_002105675.1_ASM210567v1	NZ_CP020831	Listeria monocytogenes strain PNUSAL000144 chromosome, complete genome	3	564595-566761	2,2,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAA---CTACTTATTATGAA----ATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	36,29,29	0	0	NA	NA	NA:I-A:I-A	32,33,33	33	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|148aa|down_5|NZ_CP020831.1_572307_572751_+,NA|492aa|down_9|NZ_CP020831.1_577061_578537_+	NA|612aa|up_9|NZ_CP020831.1_552387_554223_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NZ_CP020831.1_554323_554755_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NZ_CP020831.1_554801_556232_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NZ_CP020831.1_556352_557168_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NZ_CP020831.1_557519_558242_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NZ_CP020831.1_558257_559946_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP020831.1_559935_560805_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP020831.1_560782_561565_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NZ_CP020831.1_561632_563816_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP020831.1_564118_564397_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP020831.1_566833_567202_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP020831.1_567349_568765_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP020831.1_568895_569900_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP020831.1_569931_571248_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP020831.1_571448_572201_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP020831.1_572307_572751_+	NA	NA|554aa|down_6|NZ_CP020831.1_572796_574458_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP020831.1_574713_576045_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP020831.1_576091_576832_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP020831.1_577061_578537_+	NA
GCF_002105675.1_ASM210567v1	NZ_CP020831	Listeria monocytogenes strain PNUSAL000144 chromosome, complete genome	4	2646584-2647936	3,4,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Type II-B,Type II-C,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	20,20,18	20	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|216aa|up_6|NZ_CP020831.1_2634168_2634816_-,NA|121aa|up_0|NZ_CP020831.1_2645695_2646058_-,NA|160aa|down_4|NZ_CP020831.1_2654434_2654914_-	NA|281aa|up_9|NZ_CP020831.1_2630710_2631553_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_8|NZ_CP020831.1_2631600_2633082_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_7|NZ_CP020831.1_2633182_2634070_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_6|NZ_CP020831.1_2634168_2634816_-	NA	NA|179aa|up_5|NZ_CP020831.1_2634831_2635368_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|343aa|up_4|NZ_CP020831.1_2641414_2642443_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP020831.1_2642711_2644238_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP020831.1_2644279_2645131_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP020831.1_2645152_2645575_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP020831.1_2645695_2646058_-	NA	csn2|221aa|down_0|NZ_CP020831.1_2648063_2648726_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP020831.1_2648715_2649057_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP020831.1_2649053_2649920_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP020831.1_2649920_2653925_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP020831.1_2654434_2654914_-	NA	NA|131aa|down_5|NZ_CP020831.1_2655138_2655531_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP020831.1_2655552_2655990_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP020831.1_2656184_2656931_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP020831.1_2656936_2657734_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP020831.1_2657736_2658603_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
