assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	1	339176-339286	1	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGTTGCCGATC	24	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP017594.1_337508_337691_-,NA	NA|398aa|up_9|NZ_CP017594.1_327686_328880_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP017594.1_328915_330598_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP017594.1_330614_332810_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP017594.1_332923_334057_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP017594.1_334053_334674_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP017594.1_334770_335352_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP017594.1_335281_336007_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP017594.1_336096_337017_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP017594.1_337056_337485_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP017594.1_337508_337691_-	NA	NA|886aa|down_0|NZ_CP017594.1_340856_343514_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP017594.1_343804_345415_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP017594.1_345438_346347_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP017594.1_346570_348466_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP017594.1_348462_350079_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP017594.1_350075_354068_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP017594.1_354064_354373_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP017594.1_354375_355917_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP017594.1_355965_356259_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP017594.1_356288_356579_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	2	342178-343146	1	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	1	3	343018-343041|343018-343041|343018-343041	NZ_CP017594.1_1219288-1219265|NZ_CP017594.1_2449810-2449833|NZ_CP017594.1_2717387-2717364	NA	11	11	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP017594.1_337508_337691_-,NA	NA|561aa|up_9|NZ_CP017594.1_328915_330598_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP017594.1_330614_332810_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP017594.1_332923_334057_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP017594.1_334053_334674_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP017594.1_334770_335352_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP017594.1_335281_336007_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP017594.1_336096_337017_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP017594.1_337056_337485_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP017594.1_337508_337691_-	NA	NA|936aa|up_0|NZ_CP017594.1_337785_340593_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP017594.1_343804_345415_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP017594.1_345438_346347_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP017594.1_346570_348466_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP017594.1_348462_350079_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP017594.1_350075_354068_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP017594.1_354064_354373_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP017594.1_354375_355917_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP017594.1_355965_356259_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP017594.1_356288_356579_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP017594.1_356589_357477_+	pfam14011, ESX-1_EspG, EspG family
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	3	370895-371593	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	371183-371224|371258-371290	NZ_CP017594.1_379199-379240|NZ_CP017594.1_378014-378046	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP017594.1_367907_368210_+,NA|161aa|down_1|NZ_CP017594.1_380988_381471_-,NA|410aa|down_5|NZ_CP017594.1_383587_384817_+	NA|262aa|up_9|NZ_CP017594.1_362611_363397_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP017594.1_363385_364189_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP017594.1_364198_365596_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|589aa|up_6|NZ_CP017594.1_365774_367541_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP017594.1_367683_367911_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP017594.1_367907_368210_+	NA	NA|74aa|up_3|NZ_CP017594.1_368257_368479_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP017594.1_368475_368901_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP017594.1_369036_369669_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP017594.1_369665_370574_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP017594.1_380329_381001_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP017594.1_380988_381471_-	NA	NA|239aa|down_2|NZ_CP017594.1_381528_382245_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP017594.1_382346_383003_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP017594.1_383072_383564_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP017594.1_383587_384817_+	NA	NA|621aa|down_6|NZ_CP017594.1_384971_386834_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP017594.1_386905_387292_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP017594.1_387294_387957_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP017594.1_388017_388902_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	4	635611-635748	2	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	635629-635646|635629-635646|635713-635730	NZ_CP017594.1_23791-23808|NZ_CP017594.1_1415631-1415648|NZ_CP017594.1_975959-975976	NA	3	3	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP017594.1_626365_626527_-,NA|478aa|up_0|NZ_CP017594.1_632626_634060_-,NA|450aa|down_2|NZ_CP017594.1_637383_638733_-,NA|93aa|down_5|NZ_CP017594.1_640263_640542_-	NA|325aa|up_9|NZ_CP017594.1_624135_625110_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP017594.1_625151_626369_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP017594.1_626365_626527_-	NA	NA|106aa|up_6|NZ_CP017594.1_626573_626891_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_5|NZ_CP017594.1_627037_628906_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP017594.1_628801_629809_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP017594.1_629890_630769_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP017594.1_630785_631580_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP017594.1_631576_632617_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP017594.1_632626_634060_-	NA	NA|211aa|down_0|NZ_CP017594.1_636071_636704_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP017594.1_636700_637363_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP017594.1_637383_638733_-	NA	NA|381aa|down_3|NZ_CP017594.1_638744_639887_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP017594.1_639901_640204_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP017594.1_640263_640542_-	NA	NA|418aa|down_6|NZ_CP017594.1_640538_641792_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP017594.1_641911_642298_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP017594.1_642360_643245_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP017594.1_643340_644243_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	5	696349-696425	2	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP017594.1_682244_682652_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP017594.1_682711_683398_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP017594.1_683551_686185_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP017594.1_686207_688595_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP017594.1_688732_689455_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP017594.1_689451_690249_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP017594.1_690250_691138_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP017594.1_691143_692358_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP017594.1_692354_693386_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP017594.1_693382_694828_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP017594.1_697560_699111_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP017594.1_699162_699555_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP017594.1_699551_699809_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP017594.1_699991_701227_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP017594.1_701477_701891_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP017594.1_701887_702124_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP017594.1_702227_702734_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP017594.1_702847_703318_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP017594.1_703361_704123_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP017594.1_704179_704491_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	6	967291-967542	2	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	967464-967519	NZ_CP017594.1_967592-967647	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP017594.1_965389_965590_+,NA	NA|158aa|up_9|NZ_CP017594.1_955966_956440_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NZ_CP017594.1_956436_957630_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NZ_CP017594.1_957786_958998_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NZ_CP017594.1_959002_961165_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|543aa|up_5|NZ_CP017594.1_961232_962861_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NZ_CP017594.1_963051_965322_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NZ_CP017594.1_965389_965590_+	NA	NA|168aa|up_2|NZ_CP017594.1_965599_966103_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NZ_CP017594.1_966099_966582_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NZ_CP017594.1_966578_967004_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NZ_CP017594.1_968692_968971_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NZ_CP017594.1_968974_970057_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NZ_CP017594.1_970053_970443_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NZ_CP017594.1_970607_971015_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|610aa|down_4|NZ_CP017594.1_971133_972963_-	pfam00934, PE, PE family	NA|651aa|down_5|NZ_CP017594.1_973223_975176_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NZ_CP017594.1_975264_976425_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NZ_CP017594.1_976524_977013_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NZ_CP017594.1_977009_978656_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NZ_CP017594.1_978793_979582_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	7	1577336-1578407	3	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1577536-1577557	NZ_CP017594.1_1214381-1214360	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP017594.1_1569099_1569417_+,NA	NA|103aa|up_9|NZ_CP017594.1_1566614_1566923_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP017594.1_1566919_1568539_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP017594.1_1569099_1569417_+	NA	NA|209aa|up_6|NZ_CP017594.1_1569551_1570178_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP017594.1_1570243_1570576_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP017594.1_1570591_1571848_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP017594.1_1571975_1573187_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP017594.1_1573259_1574738_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP017594.1_1574734_1576120_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP017594.1_1576197_1577232_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP017594.1_1579261_1579663_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP017594.1_1579659_1579917_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP017594.1_1579999_1580959_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP017594.1_1580983_1581946_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP017594.1_1582079_1582682_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP017594.1_1582762_1584730_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP017594.1_1584747_1585572_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP017594.1_1585740_1586223_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP017594.1_1586294_1587119_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP017594.1_1587315_1588254_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	8	2100754-2101008	3	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2100835-2100852|2100835-2100852|2100925-2100942	NZ_CP017594.1_405495-405478|NZ_CP017594.1_611683-611666|NZ_CP017594.1_3466712-3466695	NA	5	5	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP017594.1_2100113_2100377_-,NA	NA|165aa|up_9|NZ_CP017594.1_2086463_2086958_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP017594.1_2087305_2087983_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP017594.1_2088341_2091167_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP017594.1_2091393_2092254_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP017594.1_2092294_2093161_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP017594.1_2093165_2095052_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP017594.1_2095067_2097101_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP017594.1_2097220_2099446_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP017594.1_2099721_2100117_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP017594.1_2100113_2100377_-	NA	NA|346aa|down_0|NZ_CP017594.1_2102145_2103183_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP017594.1_2103182_2104550_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP017594.1_2104723_2106160_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP017594.1_2106195_2107647_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP017594.1_2107676_2108627_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP017594.1_2108641_2109058_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP017594.1_2109335_2109758_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP017594.1_2109806_2110109_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP017594.1_2110105_2110420_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP017594.1_2110419_2112153_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	9	2183757-2183976	4	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP017594.1_2172436_2172844_-,NA|127aa|down_5|NZ_CP017594.1_2191492_2191873_-	NA|155aa|up_9|NZ_CP017594.1_2165764_2166229_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP017594.1_2166404_2168627_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP017594.1_2168664_2169108_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP017594.1_2169221_2169815_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP017594.1_2169897_2170503_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP017594.1_2170602_2171607_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP017594.1_2171706_2172459_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP017594.1_2172436_2172844_-	NA	NA|767aa|up_1|NZ_CP017594.1_2172978_2175279_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|up_0|NZ_CP017594.1_2179333_2180595_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|155aa|down_0|NZ_CP017594.1_2186003_2186468_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP017594.1_2186565_2187429_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP017594.1_2187466_2188738_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP017594.1_2189009_2190125_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP017594.1_2190115_2191456_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP017594.1_2191492_2191873_-	NA	NA|621aa|down_6|NZ_CP017594.1_2192029_2193892_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP017594.1_2193899_2194379_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP017594.1_2194615_2195389_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP017594.1_2195392_2196160_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	10	3140453-3141526	3,5,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	13,13,14	14	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP017594.1_3133732_3133987_-,NA|135aa|up_7|NZ_CP017594.1_3134134_3134539_+,NA|64aa|up_6|NZ_CP017594.1_3134535_3134727_+,NA|86aa|up_4|NZ_CP017594.1_3136313_3136571_+,NA|104aa|up_3|NZ_CP017594.1_3136675_3136987_+,NA|203aa|up_2|NZ_CP017594.1_3137406_3138015_+,NA	NA|92aa|up_9|NZ_CP017594.1_3133281_3133557_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP017594.1_3133732_3133987_-	NA	NA|135aa|up_7|NZ_CP017594.1_3134134_3134539_+	NA	NA|64aa|up_6|NZ_CP017594.1_3134535_3134727_+	NA	NA|385aa|up_5|NZ_CP017594.1_3134925_3136080_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP017594.1_3136313_3136571_+	NA	NA|104aa|up_3|NZ_CP017594.1_3136675_3136987_+	NA	NA|203aa|up_2|NZ_CP017594.1_3137406_3138015_+	NA	NA|470aa|up_1|NZ_CP017594.1_3138085_3139495_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP017594.1_3139491_3140304_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP017594.1_3141557_3142819_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_CP017594.1_3143182_3143893_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_CP017594.1_3143902_3144277_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_CP017594.1_3144273_3146712_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_4|NZ_CP017594.1_3146708_3147431_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_CP017594.1_3147830_3148376_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_CP017594.1_3148647_3149532_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_CP017594.1_3149534_3150422_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_CP017594.1_3150726_3151272_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_CP017594.1_3151268_3151538_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	11	3682734-3682852	6	CRISPRCasFinder	no	cas3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Unclear	GCCCCTGTGAGTCGAGTGAGCGGAACGAAC	30	1	1	3682764-3682822	NZ_CP017594.1_3682827-3682885	NA	1	1	Unclear	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|138aa|down_6|NZ_CP017594.1_3688485_3688899_-,NA|126aa|down_7|NZ_CP017594.1_3688933_3689311_-	NA|719aa|up_9|NZ_CP017594.1_3669560_3671717_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|223aa|up_8|NZ_CP017594.1_3671713_3672382_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|395aa|up_7|NZ_CP017594.1_3672482_3673667_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|765aa|up_6|NZ_CP017594.1_3673671_3675966_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_5|NZ_CP017594.1_3675954_3677124_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|175aa|up_4|NZ_CP017594.1_3677148_3677673_-	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase	NA|430aa|up_3|NZ_CP017594.1_3677669_3678959_-	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|273aa|up_2|NZ_CP017594.1_3678912_3679731_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|173aa|up_1|NZ_CP017594.1_3679685_3680204_-	pfam03703, bPH_2, Bacterial PH domain	NA|267aa|up_0|NZ_CP017594.1_3680246_3681047_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|223aa|down_0|NZ_CP017594.1_3683118_3683787_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|298aa|down_1|NZ_CP017594.1_3683827_3684721_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|144aa|down_2|NZ_CP017594.1_3684717_3685149_+	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|601aa|down_3|NZ_CP017594.1_3685256_3687059_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|262aa|down_4|NZ_CP017594.1_3687068_3687854_-	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|146aa|down_5|NZ_CP017594.1_3687850_3688288_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|138aa|down_6|NZ_CP017594.1_3688485_3688899_-	NA	NA|126aa|down_7|NZ_CP017594.1_3688933_3689311_-	NA	NA|450aa|down_8|NZ_CP017594.1_3689344_3690694_-	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|151aa|down_9|NZ_CP017594.1_3690744_3691197_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	12	3766932-3767508	5	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCNCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP017594.1_3781739_3782027_-,NA|87aa|down_8|NZ_CP017594.1_3795146_3795407_-	NA|282aa|up_9|NZ_CP017594.1_3742696_3743542_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP017594.1_3744016_3744457_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP017594.1_3744490_3745360_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP017594.1_3745380_3746391_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP017594.1_3746675_3747308_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP017594.1_3747374_3748604_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP017594.1_3748886_3750236_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP017594.1_3750247_3751387_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP017594.1_3751383_3752115_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3690aa|up_0|NZ_CP017594.1_3752123_3763193_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP017594.1_3769609_3769867_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP017594.1_3770122_3779596_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP017594.1_3780221_3780668_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_3|NZ_CP017594.1_3780704_3781523_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP017594.1_3781739_3782027_-	NA	NA|265aa|down_5|NZ_CP017594.1_3793756_3794551_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NZ_CP017594.1_3794632_3795004_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_7|NZ_CP017594.1_3794901_3795312_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NZ_CP017594.1_3795146_3795407_-	NA	NA|130aa|down_9|NZ_CP017594.1_3795521_3795911_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	13	3876439-3876528	7	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_7|NZ_CP017594.1_3868473_3868704_+,NA|121aa|up_6|NZ_CP017594.1_3868807_3869170_-,NA|73aa|up_1|NZ_CP017594.1_3874502_3874721_-,NA|121aa|down_0|NZ_CP017594.1_3877513_3877876_-,NA|52aa|down_2|NZ_CP017594.1_3879717_3879873_-,NA|52aa|down_3|NZ_CP017594.1_3879897_3880053_-,NA|238aa|down_6|NZ_CP017594.1_3884088_3884802_-	NA|169aa|up_9|NZ_CP017594.1_3866784_3867291_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|409aa|up_8|NZ_CP017594.1_3867287_3868514_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_7|NZ_CP017594.1_3868473_3868704_+	NA	NA|121aa|up_6|NZ_CP017594.1_3868807_3869170_-	NA	NA|177aa|up_5|NZ_CP017594.1_3870128_3870659_+	pfam00823, PPE, PPE family	NA|252aa|up_4|NZ_CP017594.1_3870976_3871732_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|337aa|up_3|NZ_CP017594.1_3871815_3872826_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|553aa|up_2|NZ_CP017594.1_3872851_3874510_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|up_1|NZ_CP017594.1_3874502_3874721_-	NA	NA|181aa|up_0|NZ_CP017594.1_3875602_3876145_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP017594.1_3877513_3877876_-	NA	NA|179aa|down_1|NZ_CP017594.1_3878038_3878575_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP017594.1_3879717_3879873_-	NA	NA|52aa|down_3|NZ_CP017594.1_3879897_3880053_-	NA	NA|461aa|down_4|NZ_CP017594.1_3881245_3882628_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP017594.1_3882665_3884087_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP017594.1_3884088_3884802_-	NA	NA|285aa|down_7|NZ_CP017594.1_3884812_3885667_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP017594.1_3885888_3887763_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP017594.1_3887784_3888261_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_002116775.1_ASM211677v1	NZ_CP017594	Mycobacterium tuberculosis strain Beijing-like/36918 chromosome, complete genome	14	4140363-4140451	8	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP017594.1_4130949_4131720_-,NA|119aa|up_3|NZ_CP017594.1_4136854_4137211_+,NA|52aa|up_2|NZ_CP017594.1_4137310_4137466_+,NA|233aa|up_0|NZ_CP017594.1_4139467_4140166_-,NA|126aa|down_6|NZ_CP017594.1_4145686_4146064_+	NA|288aa|up_9|NZ_CP017594.1_4129331_4130195_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP017594.1_4130949_4131720_-	NA	NA|549aa|up_7|NZ_CP017594.1_4131716_4133363_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP017594.1_4133359_4134223_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP017594.1_4134215_4135142_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP017594.1_4135143_4136769_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP017594.1_4136854_4137211_+	NA	NA|52aa|up_2|NZ_CP017594.1_4137310_4137466_+	NA	NA|652aa|up_1|NZ_CP017594.1_4137476_4139432_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP017594.1_4139467_4140166_-	NA	NA|173aa|down_0|NZ_CP017594.1_4140511_4141030_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP017594.1_4141030_4142014_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP017594.1_4142006_4143200_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP017594.1_4143205_4144027_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP017594.1_4144158_4144842_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP017594.1_4144841_4145579_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP017594.1_4145686_4146064_+	NA	NA|225aa|down_7|NZ_CP017594.1_4146162_4146837_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP017594.1_4146942_4147737_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP017594.1_4147743_4148199_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
