assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	1	233199-233314	1	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	AGGGGGAAGCGCGCAGCGCTTCGGGGGTGGGCCT	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA|110aa|up_7|NZ_CP021110.1_224198_224528_-,NA|993aa|up_6|NZ_CP021110.1_224678_227657_-,NA	NA|686aa|up_9|NZ_CP021110.1_220373_222431_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|571aa|up_8|NZ_CP021110.1_222423_224136_+	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase	NA|110aa|up_7|NZ_CP021110.1_224198_224528_-	NA	NA|993aa|up_6|NZ_CP021110.1_224678_227657_-	NA	NA|161aa|up_5|NZ_CP021110.1_227837_228320_-	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ	NA|171aa|up_4|NZ_CP021110.1_228446_228959_+	pfam09900, DUF2127, Predicted membrane protein (DUF2127)	NA|278aa|up_3|NZ_CP021110.1_228980_229814_-	PRK06180, PRK06180, short chain dehydrogenase; Provisional	NA|304aa|up_2|NZ_CP021110.1_229974_230886_+	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|276aa|up_1|NZ_CP021110.1_231060_231888_-	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|up_0|NZ_CP021110.1_232077_233034_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|278aa|down_0|NZ_CP021110.1_233316_234150_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|337aa|down_1|NZ_CP021110.1_234378_235389_-	COG4150, CysP, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|280aa|down_2|NZ_CP021110.1_235545_236385_-	PRK00241, nudC, NAD(+) diphosphatase	NA|165aa|down_3|NZ_CP021110.1_236498_236993_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|245aa|down_4|NZ_CP021110.1_237031_237766_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|202aa|down_5|NZ_CP021110.1_237762_238368_-	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|319aa|down_6|NZ_CP021110.1_238773_239730_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|172aa|down_7|NZ_CP021110.1_239927_240443_-	PRK14685, PRK14685, hypothetical protein; Provisional	NA|322aa|down_8|NZ_CP021110.1_240502_241468_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|212aa|down_9|NZ_CP021110.1_241464_242100_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	2	958892-959013	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	GGCGGAGCCGGATCCGCGGCGCCTTGATTGGCC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA,NA|78aa|down_8|NZ_CP021110.1_968689_968923_-,NA|89aa|down_9|NZ_CP021110.1_968931_969198_-	NA|200aa|up_9|NZ_CP021110.1_945329_945929_+	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|491aa|up_8|NZ_CP021110.1_945969_947442_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|137aa|up_7|NZ_CP021110.1_947455_947866_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|349aa|up_6|NZ_CP021110.1_947940_948987_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|298aa|up_5|NZ_CP021110.1_949139_950033_+	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|407aa|up_4|NZ_CP021110.1_950060_951281_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|567aa|up_3|NZ_CP021110.1_951432_953133_+	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated	NA|293aa|up_2|NZ_CP021110.1_953257_954136_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|624aa|up_1|NZ_CP021110.1_954345_956217_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|741aa|up_0|NZ_CP021110.1_956545_958768_+	pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31	NA|364aa|down_0|NZ_CP021110.1_959388_960480_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|219aa|down_1|NZ_CP021110.1_960433_961090_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|267aa|down_2|NZ_CP021110.1_961138_961939_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|803aa|down_3|NZ_CP021110.1_962606_965015_+	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein	NA|156aa|down_4|NZ_CP021110.1_965169_965637_+	cd16364, T3SC_I_like, class I type III secretion system (T3SS) chaperones and similar proteins	NA|219aa|down_5|NZ_CP021110.1_965633_966290_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|313aa|down_6|NZ_CP021110.1_966295_967234_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|286aa|down_7|NZ_CP021110.1_967341_968199_-	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|78aa|down_8|NZ_CP021110.1_968689_968923_-	NA	NA|89aa|down_9|NZ_CP021110.1_968931_969198_-	NA
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	3	1557905-1557992	3	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	GGCGGACCGGCGGAGCCGGATCCGCGGCGT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA|66aa|up_2|NZ_CP021110.1_1554358_1554556_+,NA	NA|381aa|up_9|NZ_CP021110.1_1546947_1548090_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|239aa|up_8|NZ_CP021110.1_1548250_1548967_+	PRK07577, PRK07577, SDR family oxidoreductase	NA|459aa|up_7|NZ_CP021110.1_1548993_1550370_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|302aa|up_6|NZ_CP021110.1_1550979_1551885_-	pfam03961, FapA, Flagellar Assembly Protein A	NA|139aa|up_5|NZ_CP021110.1_1552075_1552492_-	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional	NA|140aa|up_4|NZ_CP021110.1_1552799_1553219_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|303aa|up_3|NZ_CP021110.1_1553204_1554113_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|66aa|up_2|NZ_CP021110.1_1554358_1554556_+	NA	NA|851aa|up_1|NZ_CP021110.1_1554759_1557312_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|143aa|up_0|NZ_CP021110.1_1557308_1557737_+	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like	NA|240aa|down_0|NZ_CP021110.1_1558059_1558779_+	PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	NA|367aa|down_1|NZ_CP021110.1_1558906_1560007_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|376aa|down_2|NZ_CP021110.1_1560012_1561140_+	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|307aa|down_3|NZ_CP021110.1_1561136_1562057_+	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|267aa|down_4|NZ_CP021110.1_1562053_1562854_+	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|119aa|down_5|NZ_CP021110.1_1562850_1563207_+	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC	NA|231aa|down_6|NZ_CP021110.1_1563220_1563913_+	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|250aa|down_7|NZ_CP021110.1_1563964_1564714_-	pfam10707, YrbL-PhoP_reg, PhoP regulatory network protein YrbL	NA|457aa|down_8|NZ_CP021110.1_1564885_1566256_+	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|226aa|down_9|NZ_CP021110.1_1566338_1567016_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	4	2507635-2507721	4	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	CGAGGGGGCGCGCCTGCGGACCGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA,NA	NA|262aa|up_9|NZ_CP021110.1_2499272_2500058_-	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|178aa|up_8|NZ_CP021110.1_2500127_2500661_-	pfam02417, Chromate_transp, Chromate transporter	NA|193aa|up_7|NZ_CP021110.1_2500657_2501236_-	pfam02417, Chromate_transp, Chromate transporter	NA|231aa|up_6|NZ_CP021110.1_2501438_2502131_-	PRK09262, PRK09262, hypothetical protein; Provisional	NA|332aa|up_5|NZ_CP021110.1_2502195_2503191_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|298aa|up_4|NZ_CP021110.1_2503311_2504205_+	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|135aa|up_3|NZ_CP021110.1_2504261_2504666_-	pfam01475, FUR, Ferric uptake regulator family	NA|353aa|up_2|NZ_CP021110.1_2504855_2505914_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|267aa|up_1|NZ_CP021110.1_2506018_2506819_-	cd13526, PBP2_lipoprotein_MetQ_like, The periplasmic-binding component of ABC-type methionine uptake transporter system and its related lipoproteins; the type 2 periplasmic-binding protein fold	NA|222aa|up_0|NZ_CP021110.1_2506848_2507514_-	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|226aa|down_0|NZ_CP021110.1_2508034_2508712_-	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|319aa|down_1|NZ_CP021110.1_2509163_2510120_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|323aa|down_2|NZ_CP021110.1_2510322_2511291_-	PRK00283, xerD, tyrosine recombinase	NA|316aa|down_3|NZ_CP021110.1_2511297_2512245_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|386aa|down_4|NZ_CP021110.1_2512358_2513516_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|439aa|down_5|NZ_CP021110.1_2513519_2514836_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|535aa|down_6|NZ_CP021110.1_2514832_2516437_-	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]	NA|411aa|down_7|NZ_CP021110.1_2516768_2518001_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|128aa|down_8|NZ_CP021110.1_2518098_2518482_+	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]	NA|290aa|down_9|NZ_CP021110.1_2518513_2519383_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	5	2607527-2607626	5	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	GAGGGGGAAGCGCGCCAGCGCTTCGGGGGTGGGC	34	1	1	2607561-2607592	NZ_CP021110.1_2561736-2561767	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA|163aa|up_2|NZ_CP021110.1_2603707_2604196_-,NA	NA|110aa|up_9|NZ_CP021110.1_2593682_2594012_+	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|252aa|up_8|NZ_CP021110.1_2594076_2594832_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_7|NZ_CP021110.1_2594845_2595115_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|263aa|up_6|NZ_CP021110.1_2595165_2595954_+	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|1282aa|up_5|NZ_CP021110.1_2596120_2599966_+	pfam13678, Peptidase_M85, NFkB-p65-degrading zinc protease	NA|545aa|up_4|NZ_CP021110.1_2600026_2601661_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|582aa|up_3|NZ_CP021110.1_2601877_2603623_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|163aa|up_2|NZ_CP021110.1_2603707_2604196_-	NA	NA|627aa|up_1|NZ_CP021110.1_2604203_2606084_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|411aa|up_0|NZ_CP021110.1_2606138_2607371_-	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|560aa|down_0|NZ_CP021110.1_2607627_2609307_-	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|379aa|down_1|NZ_CP021110.1_2609414_2610551_-	PRK12713, flgJ, flagellar rod assembly protein/muramidase FlgJ; Provisional	NA|356aa|down_2|NZ_CP021110.1_2610563_2611631_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|232aa|down_3|NZ_CP021110.1_2611911_2612607_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|262aa|down_4|NZ_CP021110.1_2612606_2613392_-	PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed	NA|254aa|down_5|NZ_CP021110.1_2613440_2614202_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|403aa|down_6|NZ_CP021110.1_2614234_2615443_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|232aa|down_7|NZ_CP021110.1_2615527_2616223_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|139aa|down_8|NZ_CP021110.1_2616263_2616680_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|136aa|down_9|NZ_CP021110.1_2616699_2617107_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	6	3072707-3072842	6	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	AGGGGGCGACGCTGGCGGACCGGCGGAGCCGGATCCGCGGCGTCCTGGATAG	52	1	5	3072759-3072790|3072759-3072790|3072759-3072790|3072759-3072790|3072759-3072790	NZ_CP021110.1_1998452-1998421|NZ_CP021110.1_3390713-3390682|NZ_CP021110.1_3489759-3489790|NZ_CP021110.1_602179-602210|NZ_CP021110.1_4352686-4352717	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA|60aa|up_5|NZ_CP021110.1_3065444_3065624_+,NA	NA|141aa|up_9|NZ_CP021110.1_3061487_3061910_+	COG1981, COG1981, Predicted membrane protein [Function unknown]	NA|514aa|up_8|NZ_CP021110.1_3061928_3063470_+	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|353aa|up_7|NZ_CP021110.1_3063439_3064498_-	smart00797, AHS2, Allophanate hydrolase subunit 2	NA|242aa|up_6|NZ_CP021110.1_3064505_3065231_-	pfam02682, CT_C_D, Carboxyltransferase domain, subdomain C and D	NA|60aa|up_5|NZ_CP021110.1_3065444_3065624_+	NA	NA|171aa|up_4|NZ_CP021110.1_3065807_3066320_+	pfam06271, RDD, RDD family	NA|481aa|up_3|NZ_CP021110.1_3066316_3067759_-	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics	NA|329aa|up_2|NZ_CP021110.1_3067822_3068809_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|301aa|up_1|NZ_CP021110.1_3068974_3069877_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|291aa|up_0|NZ_CP021110.1_3069980_3070853_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|174aa|down_0|NZ_CP021110.1_3072933_3073455_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|307aa|down_1|NZ_CP021110.1_3073491_3074412_+	COG1281, COG1281, Disulfide bond chaperones of the HSP33 family [Posttranslational modification, protein turnover, chaperones]	NA|352aa|down_2|NZ_CP021110.1_3074669_3075725_+	pfam07811, TadE, TadE-like protein	NA|122aa|down_3|NZ_CP021110.1_3075749_3076115_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|429aa|down_4|NZ_CP021110.1_3076173_3077460_-	PRK00077, eno, enolase; Provisional	NA|286aa|down_5|NZ_CP021110.1_3077644_3078502_-	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|551aa|down_6|NZ_CP021110.1_3078498_3080151_-	PRK05380, pyrG, CTP synthetase; Validated	NA|289aa|down_7|NZ_CP021110.1_3080389_3081256_+	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|600aa|down_8|NZ_CP021110.1_3081346_3083146_-	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|273aa|down_9|NZ_CP021110.1_3083201_3084020_-	pfam04951, Peptidase_M55, D-aminopeptidase
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	7	3956393-3956482	7	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	AAGGGGGCGACGCTGGCGGACCGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA,NA	NA|63aa|up_9|NZ_CP021110.1_3945641_3945830_-	pfam11943, DUF3460, Protein of unknown function (DUF3460)	NA|485aa|up_8|NZ_CP021110.1_3945938_3947393_+	PRK10504, PRK10504, putative transporter; Provisional	NA|520aa|up_7|NZ_CP021110.1_3947382_3948942_+	PRK00047, glpK, glycerol kinase GlpK	NA|299aa|up_6|NZ_CP021110.1_3949075_3949972_+	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|398aa|up_5|NZ_CP021110.1_3950115_3951309_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|316aa|up_4|NZ_CP021110.1_3951360_3952308_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|208aa|up_3|NZ_CP021110.1_3952350_3952974_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|305aa|up_2|NZ_CP021110.1_3953044_3953959_-	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|351aa|up_1|NZ_CP021110.1_3954147_3955200_+	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|319aa|up_0|NZ_CP021110.1_3955417_3956374_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|233aa|down_0|NZ_CP021110.1_3956736_3957435_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|421aa|down_1|NZ_CP021110.1_3957474_3958737_+	PRK07538, PRK07538, hypothetical protein; Provisional	NA|326aa|down_2|NZ_CP021110.1_3958794_3959772_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|213aa|down_3|NZ_CP021110.1_3959818_3960457_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|125aa|down_4|NZ_CP021110.1_3960488_3960863_+	smart00830, CM_2, Chorismate mutase type II	NA|315aa|down_5|NZ_CP021110.1_3960904_3961849_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|447aa|down_6|NZ_CP021110.1_3961865_3963206_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|396aa|down_7|NZ_CP021110.1_3963628_3964816_+	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|335aa|down_8|NZ_CP021110.1_3964897_3965902_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|247aa|down_9|NZ_CP021110.1_3966197_3966938_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	8	3963362-3963449	8	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	GGGGGCGCGCCTGCGGACCGGAGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA,NA	NA|305aa|up_9|NZ_CP021110.1_3953044_3953959_-	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|351aa|up_8|NZ_CP021110.1_3954147_3955200_+	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|319aa|up_7|NZ_CP021110.1_3955417_3956374_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|233aa|up_6|NZ_CP021110.1_3956736_3957435_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|421aa|up_5|NZ_CP021110.1_3957474_3958737_+	PRK07538, PRK07538, hypothetical protein; Provisional	NA|326aa|up_4|NZ_CP021110.1_3958794_3959772_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|213aa|up_3|NZ_CP021110.1_3959818_3960457_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|125aa|up_2|NZ_CP021110.1_3960488_3960863_+	smart00830, CM_2, Chorismate mutase type II	NA|315aa|up_1|NZ_CP021110.1_3960904_3961849_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|447aa|up_0|NZ_CP021110.1_3961865_3963206_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|396aa|down_0|NZ_CP021110.1_3963628_3964816_+	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|335aa|down_1|NZ_CP021110.1_3964897_3965902_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|247aa|down_2|NZ_CP021110.1_3966197_3966938_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|343aa|down_3|NZ_CP021110.1_3966994_3968023_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|397aa|down_4|NZ_CP021110.1_3968156_3969347_-	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|339aa|down_5|NZ_CP021110.1_3969413_3970430_-	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|225aa|down_6|NZ_CP021110.1_3970659_3971334_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|303aa|down_7|NZ_CP021110.1_3971330_3972239_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|212aa|down_8|NZ_CP021110.1_3972521_3973157_+	PRK13489, PRK13489, chemoreceptor glutamine deamidase CheD; Provisional	NA|1212aa|down_9|NZ_CP021110.1_3973267_3976903_-	PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase; Validated
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	9	4063390-4063477	9	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	AGGGGGCGCGCCGGTGGACCGGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA,NA	NA|400aa|up_9|NZ_CP021110.1_4050721_4051921_+	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|304aa|up_8|NZ_CP021110.1_4051868_4052780_-	cd08427, PBP2_LTTR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|148aa|up_7|NZ_CP021110.1_4052883_4053327_+	cd08357, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases	NA|223aa|up_6|NZ_CP021110.1_4053357_4054026_+	pfam02682, CT_C_D, Carboxyltransferase domain, subdomain C and D	NA|345aa|up_5|NZ_CP021110.1_4054064_4055099_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|262aa|up_4|NZ_CP021110.1_4055110_4055896_+	pfam03746, LamB_YcsF, LamB/YcsF family	NA|227aa|up_3|NZ_CP021110.1_4055929_4056610_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|308aa|up_2|NZ_CP021110.1_4056708_4057632_-	pfam09572, RE_XamI, XamI restriction endonuclease	NA|529aa|up_1|NZ_CP021110.1_4057628_4059215_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|1322aa|up_0|NZ_CP021110.1_4059340_4063306_-	pfam12447, DUF3683, Protein of unknown function (DUF3683)	NA|174aa|down_0|NZ_CP021110.1_4063628_4064150_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|503aa|down_1|NZ_CP021110.1_4064388_4065897_+	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|298aa|down_2|NZ_CP021110.1_4065936_4066830_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|129aa|down_3|NZ_CP021110.1_4067082_4067469_+	cd02214, cupin_MJ1618, Methanocaldococcus jannaschii MJ1618 and related proteins, cupin domain	NA|330aa|down_4|NZ_CP021110.1_4067637_4068627_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|408aa|down_5|NZ_CP021110.1_4068623_4069847_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|389aa|down_6|NZ_CP021110.1_4069846_4071013_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|247aa|down_7|NZ_CP021110.1_4071071_4071812_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|185aa|down_8|NZ_CP021110.1_4071858_4072413_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|335aa|down_9|NZ_CP021110.1_4072447_4073452_-	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold
GCF_002119745.1_ASM211974v1	NZ_CP021110	Bordetella genomosp. 9 strain AU14267 chromosome, complete genome	10	4133036-4133124	10	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3	Orphan	CCGGTCCGCAGGCGCGCCCCCTTGAG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3	NA|108aa|up_6|NZ_CP021110.1_4125604_4125928_-,NA	NA|240aa|up_9|NZ_CP021110.1_4123454_4124174_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|310aa|up_8|NZ_CP021110.1_4124182_4125112_+	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|97aa|up_7|NZ_CP021110.1_4125205_4125496_-	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain	NA|108aa|up_6|NZ_CP021110.1_4125604_4125928_-	NA	NA|101aa|up_5|NZ_CP021110.1_4125924_4126227_-	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|244aa|up_4|NZ_CP021110.1_4126242_4126974_-	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|127aa|up_3|NZ_CP021110.1_4127679_4128060_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|88aa|up_2|NZ_CP021110.1_4128217_4128481_+	pfam07369, DUF1488, Protein of unknown function (DUF1488)	NA|504aa|up_1|NZ_CP021110.1_4128796_4130308_+	PRK13274, mdoG, glucan biosynthesis protein G; Provisional	NA|843aa|up_0|NZ_CP021110.1_4130288_4132817_+	COG2943, MdoH, Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|319aa|down_0|NZ_CP021110.1_4133139_4134096_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|318aa|down_1|NZ_CP021110.1_4134299_4135253_-	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|293aa|down_2|NZ_CP021110.1_4135299_4136178_-	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold	NA|390aa|down_3|NZ_CP021110.1_4136227_4137397_-	PRK07608, PRK07608, UbiH/UbiF family hydroxylase	NA|437aa|down_4|NZ_CP021110.1_4137393_4138704_-	pfam03562, MltA, MltA specific insert domain	NA|125aa|down_5|NZ_CP021110.1_4138769_4139144_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|239aa|down_6|NZ_CP021110.1_4139240_4139957_+	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|236aa|down_7|NZ_CP021110.1_4140081_4140789_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|507aa|down_8|NZ_CP021110.1_4141051_4142572_+	PRK13565, PRK13565, anthranilate synthase component I; Provisional	NA|191aa|down_9|NZ_CP021110.1_4142601_4143174_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional
