assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	1	135191-135296	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	GTGGGTGCCGACCGTTGGTCGGCAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA,NA|105aa|down_2|NZ_CP015612.1_137477_137792_+,NA|296aa|down_9|NZ_CP015612.1_142657_143545_-	NA|264aa|up_9|NZ_CP015612.1_124376_125168_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|345aa|up_8|NZ_CP015612.1_125175_126210_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|690aa|up_7|NZ_CP015612.1_126266_128336_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|204aa|up_6|NZ_CP015612.1_128346_128958_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|154aa|up_5|NZ_CP015612.1_129082_129544_-	COG3187, HslJ, Heat shock protein [Posttranslational modification, protein turnover, chaperones]	NA|275aa|up_4|NZ_CP015612.1_129711_130536_-	pfam14302, DUF4377, Domain of unknown function (DUF4377)	NA|265aa|up_3|NZ_CP015612.1_130609_131404_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|470aa|up_2|NZ_CP015612.1_131628_133038_+	PRK09469, glnA, glutamate--ammonia ligase	NA|113aa|up_1|NZ_CP015612.1_133370_133709_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|477aa|up_0|NZ_CP015612.1_133730_135161_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|249aa|down_0|NZ_CP015612.1_135387_136134_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|389aa|down_1|NZ_CP015612.1_136201_137368_+	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]	NA|105aa|down_2|NZ_CP015612.1_137477_137792_+	NA	NA|99aa|down_3|NZ_CP015612.1_137855_138152_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|94aa|down_4|NZ_CP015612.1_138165_138447_-	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|354aa|down_5|NZ_CP015612.1_138586_139648_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|483aa|down_6|NZ_CP015612.1_139640_141089_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|190aa|down_7|NZ_CP015612.1_141182_141752_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|209aa|down_8|NZ_CP015612.1_141783_142410_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|296aa|down_9|NZ_CP015612.1_142657_143545_-	NA
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	2	486965-487072	2	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	AGCTTCATCCACGCATGGCGTGGAT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|226aa|up_9|NZ_CP015612.1_476738_477416_+,NA|205aa|up_1|NZ_CP015612.1_485076_485691_-,NA|181aa|down_9|NZ_CP015612.1_500234_500777_+	NA|226aa|up_9|NZ_CP015612.1_476738_477416_+	NA	NA|550aa|up_8|NZ_CP015612.1_477432_479082_+	pfam03783, CsgG, Curli production assembly/transport component CsgG	NA|287aa|up_7|NZ_CP015612.1_479309_480170_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|98aa|up_6|NZ_CP015612.1_480166_480460_-	pfam01527, HTH_Tnp_1, Transposase	NA|550aa|up_5|NZ_CP015612.1_480719_482369_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|420aa|up_4|NZ_CP015612.1_482654_483914_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|257aa|up_3|NZ_CP015612.1_483903_484674_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|115aa|up_2|NZ_CP015612.1_484692_485037_+	pfam03090, Replicase, Replicase family	NA|205aa|up_1|NZ_CP015612.1_485076_485691_-	NA	NA|310aa|up_0|NZ_CP015612.1_486000_486930_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|down_0|NZ_CP015612.1_487077_487665_-	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional	NA|405aa|down_1|NZ_CP015612.1_487798_489013_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|704aa|down_2|NZ_CP015612.1_490426_492538_-	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|1021aa|down_3|NZ_CP015612.1_492714_495777_+	cd01948, EAL, EAL domain	NA|294aa|down_4|NZ_CP015612.1_495871_496753_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|137aa|down_5|NZ_CP015612.1_496849_497260_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|263aa|down_6|NZ_CP015612.1_497291_498080_+	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|550aa|down_7|NZ_CP015612.1_498197_499847_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|83aa|down_8|NZ_CP015612.1_499895_500144_-	pfam11730, DUF3297, Protein of unknown function (DUF3297)	NA|181aa|down_9|NZ_CP015612.1_500234_500777_+	NA
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	3	758411-758498	3	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	GGTAGGTGCCGAGCTTGCTCGGCACGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|144aa|up_7|NZ_CP015612.1_749866_750298_-,NA|309aa|up_0|NZ_CP015612.1_757422_758349_+,NA	NA|276aa|up_9|NZ_CP015612.1_747722_748550_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|up_8|NZ_CP015612.1_748723_749719_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|up_7|NZ_CP015612.1_749866_750298_-	NA	NA|322aa|up_6|NZ_CP015612.1_750447_751413_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|433aa|up_5|NZ_CP015612.1_751438_752737_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|324aa|up_4|NZ_CP015612.1_752930_753902_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|65aa|up_3|NZ_CP015612.1_754155_754350_+	pfam10636, hemP, Hemin uptake protein hemP	NA|736aa|up_2|NZ_CP015612.1_754539_756747_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|200aa|up_1|NZ_CP015612.1_756751_757351_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|309aa|up_0|NZ_CP015612.1_757422_758349_+	NA	NA|839aa|down_0|NZ_CP015612.1_758517_761034_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|216aa|down_1|NZ_CP015612.1_761030_761678_-	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|215aa|down_2|NZ_CP015612.1_761753_762398_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|249aa|down_3|NZ_CP015612.1_762452_763199_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|424aa|down_4|NZ_CP015612.1_763356_764628_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|down_5|NZ_CP015612.1_764997_765699_-	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|132aa|down_6|NZ_CP015612.1_765912_766308_+	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|250aa|down_7|NZ_CP015612.1_766340_767090_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|387aa|down_8|NZ_CP015612.1_767337_768498_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|207aa|down_9|NZ_CP015612.1_769028_769649_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	4	1108307-1108381	4	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	GGTGCCGTCCGTTGGTCGGCACA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA,NA|89aa|down_2|NZ_CP015612.1_1109970_1110237_-	NA|328aa|up_9|NZ_CP015612.1_1099864_1100848_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|299aa|up_8|NZ_CP015612.1_1100890_1101787_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|71aa|up_7|NZ_CP015612.1_1102197_1102410_+	pfam14117, DUF4287, Domain of unknown function (DUF4287)	NA|150aa|up_6|NZ_CP015612.1_1102506_1102956_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|236aa|up_5|NZ_CP015612.1_1103048_1103756_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|181aa|up_4|NZ_CP015612.1_1103829_1104372_-	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	NA|596aa|up_3|NZ_CP015612.1_1104368_1106156_-	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|189aa|up_2|NZ_CP015612.1_1106247_1106814_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|165aa|up_1|NZ_CP015612.1_1106806_1107301_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|317aa|up_0|NZ_CP015612.1_1107316_1108267_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|163aa|down_0|NZ_CP015612.1_1108494_1108983_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|266aa|down_1|NZ_CP015612.1_1109102_1109900_-	COG4099, COG4099, Predicted peptidase [General function prediction only]	NA|89aa|down_2|NZ_CP015612.1_1109970_1110237_-	NA	NA|454aa|down_3|NZ_CP015612.1_1110297_1111659_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|590aa|down_4|NZ_CP015612.1_1111847_1113617_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|90aa|down_5|NZ_CP015612.1_1113619_1113889_-	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family	NA|131aa|down_6|NZ_CP015612.1_1113881_1114274_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|295aa|down_7|NZ_CP015612.1_1114702_1115587_-	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|down_8|NZ_CP015612.1_1115614_1116565_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|151aa|down_9|NZ_CP015612.1_1116561_1117014_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	5	2198037-2198119	5	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	TGCCCACCAAGGTGGGCACCTACCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|155aa|up_8|NZ_CP015612.1_2192168_2192633_-,NA|116aa|up_7|NZ_CP015612.1_2192752_2193100_-,NA|72aa|up_6|NZ_CP015612.1_2193197_2193413_-,NA|158aa|up_1|NZ_CP015612.1_2197079_2197553_-,NA|128aa|down_4|NZ_CP015612.1_2202175_2202559_-,NA|91aa|down_5|NZ_CP015612.1_2202687_2202960_-,NA|423aa|down_8|NZ_CP015612.1_2204249_2205518_+,NA|213aa|down_9|NZ_CP015612.1_2205998_2206637_+	NA|920aa|up_9|NZ_CP015612.1_2188622_2191382_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|155aa|up_8|NZ_CP015612.1_2192168_2192633_-	NA	NA|116aa|up_7|NZ_CP015612.1_2192752_2193100_-	NA	NA|72aa|up_6|NZ_CP015612.1_2193197_2193413_-	NA	NA|397aa|up_5|NZ_CP015612.1_2193511_2194702_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|up_4|NZ_CP015612.1_2194866_2195481_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|up_3|NZ_CP015612.1_2195477_2196620_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|up_2|NZ_CP015612.1_2196616_2197078_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|158aa|up_1|NZ_CP015612.1_2197079_2197553_-	NA	NA|109aa|up_0|NZ_CP015612.1_2197665_2197992_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_0|NZ_CP015612.1_2198129_2198942_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_1|NZ_CP015612.1_2199080_2201366_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|93aa|down_2|NZ_CP015612.1_2201543_2201822_+	pfam05015, HigB-like_toxin, RelE-like toxin of type II toxin-antitoxin system HigB	NA|96aa|down_3|NZ_CP015612.1_2201830_2202118_+	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|128aa|down_4|NZ_CP015612.1_2202175_2202559_-	NA	NA|91aa|down_5|NZ_CP015612.1_2202687_2202960_-	NA	NA|73aa|down_6|NZ_CP015612.1_2203131_2203350_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|247aa|down_7|NZ_CP015612.1_2203436_2204177_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|423aa|down_8|NZ_CP015612.1_2204249_2205518_+	NA	NA|213aa|down_9|NZ_CP015612.1_2205998_2206637_+	NA
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	6	2516002-2516119	6	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	CATCCACGCATGGCGTGGATCTACTGCAGAGCCTGCTCT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|112aa|up_4|NZ_CP015612.1_2513571_2513907_+,NA|151aa|up_3|NZ_CP015612.1_2513998_2514451_-,NA	NA|582aa|up_9|NZ_CP015612.1_2507014_2508760_-	pfam16930, Porin_5, Putative porin	NA|222aa|up_8|NZ_CP015612.1_2508801_2509467_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|138aa|up_7|NZ_CP015612.1_2509506_2509920_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|595aa|up_6|NZ_CP015612.1_2509930_2511715_-	COG5306, COG5306, Uncharacterized conserved protein [Function unknown]	NA|539aa|up_5|NZ_CP015612.1_2511753_2513370_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|112aa|up_4|NZ_CP015612.1_2513571_2513907_+	NA	NA|151aa|up_3|NZ_CP015612.1_2513998_2514451_-	NA	NA|149aa|up_2|NZ_CP015612.1_2514566_2515013_+	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|121aa|up_1|NZ_CP015612.1_2515009_2515372_+	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|205aa|up_0|NZ_CP015612.1_2515368_2515983_+	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|4128aa|down_0|NZ_CP015612.1_2516383_2528767_-	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein	NA|392aa|down_1|NZ_CP015612.1_2528967_2530143_-	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|392aa|down_2|NZ_CP015612.1_2530543_2531719_-	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|400aa|down_3|NZ_CP015612.1_2532031_2533231_-	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|478aa|down_4|NZ_CP015612.1_2533238_2534672_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|794aa|down_5|NZ_CP015612.1_2534668_2537050_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|176aa|down_6|NZ_CP015612.1_2537046_2537574_-	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|388aa|down_7|NZ_CP015612.1_2537570_2538734_-	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|302aa|down_8|NZ_CP015612.1_2538730_2539636_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|146aa|down_9|NZ_CP015612.1_2539645_2540083_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	7	3822686-3822796	7	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	GCATCAGTGCCAACCAAGGTTGGCACCCACCAGGCCCACCG	41	1	5	3822727-3822755|3822727-3822755|3822727-3822755|3822727-3822755|3822727-3822755	NZ_CP015612.1_1037590-1037562|NZ_CP015612.1_1399198-1399170|NZ_CP015612.1_1922859-1922831|NZ_CP015612.1_3152500-3152472|NZ_CP015612.1_2965644-2965616	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA,NA	NA|579aa|up_9|NZ_CP015612.1_3812059_3813796_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|84aa|up_8|NZ_CP015612.1_3813779_3814031_+	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]	NA|364aa|up_7|NZ_CP015612.1_3814127_3815219_+	PRK08813, PRK08813, threonine dehydratase; Provisional	NA|529aa|up_6|NZ_CP015612.1_3815215_3816802_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|260aa|up_5|NZ_CP015612.1_3816812_3817592_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|473aa|up_4|NZ_CP015612.1_3817652_3819071_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|193aa|up_3|NZ_CP015612.1_3819070_3819649_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|354aa|up_2|NZ_CP015612.1_3819638_3820700_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|258aa|up_1|NZ_CP015612.1_3820864_3821638_-	PRK12744, PRK12744, SDR family oxidoreductase	NA|302aa|up_0|NZ_CP015612.1_3821756_3822662_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|1054aa|down_0|NZ_CP015612.1_3822840_3826002_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|377aa|down_1|NZ_CP015612.1_3826006_3827137_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|227aa|down_2|NZ_CP015612.1_3827255_3827936_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|216aa|down_3|NZ_CP015612.1_3828072_3828720_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|453aa|down_4|NZ_CP015612.1_3828736_3830095_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|406aa|down_5|NZ_CP015612.1_3830163_3831381_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|433aa|down_6|NZ_CP015612.1_3831596_3832895_-	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|306aa|down_7|NZ_CP015612.1_3832955_3833873_+	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA|150aa|down_8|NZ_CP015612.1_3833915_3834365_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|444aa|down_9|NZ_CP015612.1_3834502_3835834_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	8	3951328-3951438	8	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	GGCAAAGGCGTGCGGGCCAACGGTCCGCACCCACC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|413aa|up_2|NZ_CP015612.1_3946912_3948151_-,NA	NA|248aa|up_9|NZ_CP015612.1_3939327_3940071_+	cd03765, proteasome_beta_bacterial, Bacterial proteasome, beta subunit	NA|504aa|up_8|NZ_CP015612.1_3940145_3941657_-	PRK13837, PRK13837, two-component system VirA-like sensor kinase	NA|147aa|up_7|NZ_CP015612.1_3941661_3942102_-	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|606aa|up_6|NZ_CP015612.1_3942098_3943916_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_5|NZ_CP015612.1_3944085_3944469_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_4|NZ_CP015612.1_3944639_3945683_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_3|NZ_CP015612.1_3945996_3946902_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|413aa|up_2|NZ_CP015612.1_3946912_3948151_-	NA	NA|197aa|up_1|NZ_CP015612.1_3948168_3948759_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_0|NZ_CP015612.1_3949004_3951182_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|237aa|down_0|NZ_CP015612.1_3952467_3953178_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|down_1|NZ_CP015612.1_3953165_3953444_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|331aa|down_2|NZ_CP015612.1_3953613_3954606_-	pfam03783, CsgG, Curli production assembly/transport component CsgG	NA|358aa|down_3|NZ_CP015612.1_3954947_3956021_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|407aa|down_4|NZ_CP015612.1_3956110_3957331_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|425aa|down_5|NZ_CP015612.1_3957431_3958706_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|down_6|NZ_CP015612.1_3958702_3959848_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|368aa|down_7|NZ_CP015612.1_3960988_3962092_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|321aa|down_8|NZ_CP015612.1_3962424_3963387_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|371aa|down_9|NZ_CP015612.1_3963466_3964579_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	9	4204573-4204671	9	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	CCCGACCAACGGTCGGGCGCTACCGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA,NA|120aa|down_6|NZ_CP015612.1_4213864_4214224_-,NA|324aa|down_9|NZ_CP015612.1_4215227_4216199_-	NA|528aa|up_9|NZ_CP015612.1_4195310_4196894_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|428aa|up_8|NZ_CP015612.1_4196955_4198239_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|111aa|up_7|NZ_CP015612.1_4198362_4198695_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|130aa|up_6|NZ_CP015612.1_4198678_4199068_-	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system	NA|292aa|up_5|NZ_CP015612.1_4199239_4200115_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|238aa|up_4|NZ_CP015612.1_4200393_4201107_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|281aa|up_3|NZ_CP015612.1_4201103_4201946_-	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|316aa|up_2|NZ_CP015612.1_4201953_4202901_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|229aa|up_1|NZ_CP015612.1_4202904_4203591_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|248aa|up_0|NZ_CP015612.1_4203690_4204434_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|574aa|down_0|NZ_CP015612.1_4204672_4206394_-	PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional	NA|110aa|down_1|NZ_CP015612.1_4206904_4207234_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|584aa|down_2|NZ_CP015612.1_4207463_4209215_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|525aa|down_3|NZ_CP015612.1_4209426_4211001_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|297aa|down_4|NZ_CP015612.1_4211035_4211926_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|577aa|down_5|NZ_CP015612.1_4211987_4213718_-	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK)	NA|120aa|down_6|NZ_CP015612.1_4213864_4214224_-	NA	NA|139aa|down_7|NZ_CP015612.1_4214277_4214694_-	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|183aa|down_8|NZ_CP015612.1_4214686_4215235_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|324aa|down_9|NZ_CP015612.1_4215227_4216199_-	NA
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	10	4278293-4278402	10	CRISPRCasFinder	no	WYL	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Unclear	CCGGTAGATCCACGCCATGCGTGGATGCGGTCAGG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|218aa|up_1|NZ_CP015612.1_4276901_4277555_-,NA|182aa|up_0|NZ_CP015612.1_4277680_4278226_+,NA	NA|162aa|up_9|NZ_CP015612.1_4268837_4269323_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|943aa|up_8|NZ_CP015612.1_4269656_4272485_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|up_7|NZ_CP015612.1_4272484_4272877_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|up_6|NZ_CP015612.1_4272873_4274409_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|up_5|NZ_CP015612.1_4274405_4274912_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|up_4|NZ_CP015612.1_4274908_4275193_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|up_3|NZ_CP015612.1_4275189_4275579_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|up_2|NZ_CP015612.1_4275862_4276828_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|218aa|up_1|NZ_CP015612.1_4276901_4277555_-	NA	NA|182aa|up_0|NZ_CP015612.1_4277680_4278226_+	NA	NA|436aa|down_0|NZ_CP015612.1_4278434_4279742_-	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	NA|357aa|down_1|NZ_CP015612.1_4279827_4280898_-	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|186aa|down_2|NZ_CP015612.1_4281006_4281564_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|380aa|down_3|NZ_CP015612.1_4281644_4282784_-	TIGR00712, Glycerol-3-phosphate_transporter, glycerol-3-phosphate transporter	NA|202aa|down_4|NZ_CP015612.1_4283075_4283681_-	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|500aa|down_5|NZ_CP015612.1_4283700_4285200_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|292aa|down_6|NZ_CP015612.1_4285381_4286257_-	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|361aa|down_7|NZ_CP015612.1_4286592_4287675_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|329aa|down_8|NZ_CP015612.1_4287748_4288735_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|118aa|down_9|NZ_CP015612.1_4288736_4289090_+	cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	11	4317627-4317768	11	CRISPRCasFinder	no	WYL	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Unclear	CATCAAAAGCGCCGACCAAGGTCGGCATCCACCAAAGCAGTCCGTC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|161aa|up_8|NZ_CP015612.1_4307262_4307745_+,NA|480aa|up_6|NZ_CP015612.1_4309415_4310855_+,NA|1068aa|up_5|NZ_CP015612.1_4310863_4314067_+,NA|123aa|up_4|NZ_CP015612.1_4314211_4314580_+,NA|107aa|down_0|NZ_CP015612.1_4317827_4318148_-,NA|175aa|down_5|NZ_CP015612.1_4323489_4324014_+	NA|403aa|up_9|NZ_CP015612.1_4305927_4307136_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|161aa|up_8|NZ_CP015612.1_4307262_4307745_+	NA	WYL|352aa|up_7|NZ_CP015612.1_4308335_4309391_+	pfam13280, WYL, WYL domain	NA|480aa|up_6|NZ_CP015612.1_4309415_4310855_+	NA	NA|1068aa|up_5|NZ_CP015612.1_4310863_4314067_+	NA	NA|123aa|up_4|NZ_CP015612.1_4314211_4314580_+	NA	NA|145aa|up_3|NZ_CP015612.1_4314721_4315156_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|97aa|up_2|NZ_CP015612.1_4315307_4315598_+	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|220aa|up_1|NZ_CP015612.1_4315597_4316257_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|440aa|up_0|NZ_CP015612.1_4316253_4317573_+	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG	NA|107aa|down_0|NZ_CP015612.1_4317827_4318148_-	NA	NA|630aa|down_1|NZ_CP015612.1_4318192_4320082_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|285aa|down_2|NZ_CP015612.1_4320273_4321128_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|303aa|down_3|NZ_CP015612.1_4321246_4322155_-	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO	NA|220aa|down_4|NZ_CP015612.1_4322588_4323248_+	TIGR03724, Probable_serine/threonine-protein_kinase, Kae1-associated kinase Bud32	NA|175aa|down_5|NZ_CP015612.1_4323489_4324014_+	NA	NA|322aa|down_6|NZ_CP015612.1_4324416_4325382_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|113aa|down_7|NZ_CP015612.1_4325422_4325761_-	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|84aa|down_8|NZ_CP015612.1_4325916_4326168_+	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown]	NA|145aa|down_9|NZ_CP015612.1_4326294_4326729_+	pfam12120, Arr-ms, Rifampin ADP-ribosyl transferase
GCF_002138415.1_ASM213841v1	NZ_CP015612	Stenotrophomonas maltophilia strain OUC_Est10, complete genome	12	4342714-4342835	12	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	Orphan	GGCGCTTGCCGTCTACGTGTGCCAACCAAGGTTGGCACCTACC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3,Cas9_archaeal,DinG	NA|177aa|up_9|NZ_CP015612.1_4329391_4329922_+,NA|71aa|up_4|NZ_CP015612.1_4337203_4337416_+,NA|110aa|up_3|NZ_CP015612.1_4337522_4337852_-,NA|87aa|up_1|NZ_CP015612.1_4339570_4339831_+,NA|198aa|down_5|NZ_CP015612.1_4348448_4349042_+	NA|177aa|up_9|NZ_CP015612.1_4329391_4329922_+	NA	NA|349aa|up_8|NZ_CP015612.1_4331383_4332430_-	TIGR04463, Radical_SAM_domain_protein, radical SAM/SPASM domain protein maturase	NA|691aa|up_7|NZ_CP015612.1_4332445_4334518_-	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|412aa|up_6|NZ_CP015612.1_4334542_4335778_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|431aa|up_5|NZ_CP015612.1_4335774_4337067_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|71aa|up_4|NZ_CP015612.1_4337203_4337416_+	NA	NA|110aa|up_3|NZ_CP015612.1_4337522_4337852_-	NA	NA|501aa|up_2|NZ_CP015612.1_4337879_4339382_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|87aa|up_1|NZ_CP015612.1_4339570_4339831_+	NA	NA|773aa|up_0|NZ_CP015612.1_4340121_4342440_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|278aa|down_0|NZ_CP015612.1_4342854_4343688_-	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|221aa|down_1|NZ_CP015612.1_4343837_4344500_+	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|437aa|down_2|NZ_CP015612.1_4344628_4345939_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|147aa|down_3|NZ_CP015612.1_4345931_4346372_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|589aa|down_4|NZ_CP015612.1_4346682_4348449_+	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases	NA|198aa|down_5|NZ_CP015612.1_4348448_4349042_+	NA	NA|224aa|down_6|NZ_CP015612.1_4349178_4349850_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|111aa|down_7|NZ_CP015612.1_4349993_4350326_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|212aa|down_8|NZ_CP015612.1_4350327_4350963_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|659aa|down_9|NZ_CP015612.1_4350959_4352936_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I
