assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002139975.1_ASM213997v1	NZ_CP020882	Xanthomonas citri pv. citri strain TX160042 chromosome, complete genome	1	508770-509124	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	Orphan	GATGCTGCCGTTGACCGTTTCCA,GCCGTTGACCGTTTCCANG,GCCGTTGACCGTTTCCA	23,19,17	0	0	NA	NA	NA:NA:NA	6,6,4	6	Orphan	DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	NA|86aa|up_8|NZ_CP020882.1_497967_498225_+,NA|171aa|up_7|NZ_CP020882.1_498493_499006_+,NA|53aa|up_6|NZ_CP020882.1_499011_499170_+,NA	NA|118aa|up_9|NZ_CP020882.1_497095_497449_-	pfam06877, RraB, Regulator of ribonuclease activity B	NA|86aa|up_8|NZ_CP020882.1_497967_498225_+	NA	NA|171aa|up_7|NZ_CP020882.1_498493_499006_+	NA	NA|53aa|up_6|NZ_CP020882.1_499011_499170_+	NA	NA|261aa|up_5|NZ_CP020882.1_500647_501430_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|337aa|up_4|NZ_CP020882.1_501429_502440_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|351aa|up_3|NZ_CP020882.1_502696_503749_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|378aa|up_2|NZ_CP020882.1_504385_505519_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|148aa|up_1|NZ_CP020882.1_505811_506255_+	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|599aa|up_0|NZ_CP020882.1_506574_508371_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|433aa|down_0|NZ_CP020882.1_509286_510585_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|509aa|down_1|NZ_CP020882.1_510689_512216_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|331aa|down_2|NZ_CP020882.1_512381_513374_-	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|107aa|down_3|NZ_CP020882.1_513373_513694_-	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|231aa|down_4|NZ_CP020882.1_513802_514495_-	pfam01694, Rhomboid, Rhomboid family	NA|447aa|down_5|NZ_CP020882.1_514713_516054_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|234aa|down_6|NZ_CP020882.1_516323_517025_+	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|337aa|down_7|NZ_CP020882.1_518002_519013_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|down_8|NZ_CP020882.1_519012_519795_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|197aa|down_9|NZ_CP020882.1_520565_521156_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
GCF_002139975.1_ASM213997v1	NZ_CP020882	Xanthomonas citri pv. citri strain TX160042 chromosome, complete genome	2	702499-703783	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas4,cas7,cas8c,cas3	DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	Type I-U,Type I-C, Type I-U?	GTTTCAATCCACGCGCCCGTGAGGGCGCGAC,GTTTCAATCCACGCGCCCGTGAGGGCGCGAC,GTTTCAATCCACGCGCCCGTGAGGGCGCGAC	31,31,31	0	0	NA	NA	I-C:I-C:I-C	19,19,19	19	TypeI-U,TypeI-C,TypeI-U?	DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	NA|191aa|up_9|NZ_CP020882.1_687664_688237_+,NA|206aa|up_8|NZ_CP020882.1_688531_689149_+,NA|87aa|down_9|NZ_CP020882.1_718401_718662_-	NA|191aa|up_9|NZ_CP020882.1_687664_688237_+	NA	NA|206aa|up_8|NZ_CP020882.1_688531_689149_+	NA	NA|456aa|up_7|NZ_CP020882.1_689312_690680_+	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|1047aa|up_6|NZ_CP020882.1_690862_694003_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1083aa|up_5|NZ_CP020882.1_694183_697432_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|415aa|up_4|NZ_CP020882.1_697525_698770_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|436aa|up_3|NZ_CP020882.1_699028_700336_+	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|272aa|up_2|NZ_CP020882.1_700494_701310_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|98aa|up_1|NZ_CP020882.1_701412_701706_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|186aa|up_0|NZ_CP020882.1_701810_702368_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|261aa|down_0|NZ_CP020882.1_703958_704741_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|337aa|down_1|NZ_CP020882.1_704740_705751_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas1|345aa|down_2|NZ_CP020882.1_706564_707599_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|211aa|down_3|NZ_CP020882.1_707601_708234_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|289aa|down_4|NZ_CP020882.1_708253_709120_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|623aa|down_5|NZ_CP020882.1_709116_710985_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas3|765aa|down_6|NZ_CP020882.1_711738_714033_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|567aa|down_7|NZ_CP020882.1_714196_715897_-	COG4715, COG4715, Uncharacterized conserved protein [Function unknown]	NA|744aa|down_8|NZ_CP020882.1_716098_718330_+	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|87aa|down_9|NZ_CP020882.1_718401_718662_-	NA
GCF_002139975.1_ASM213997v1	NZ_CP020882	Xanthomonas citri pv. citri strain TX160042 chromosome, complete genome	3	705838-706068	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas4,cas7,cas8c,cas3	DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	Type I-U,Type I-C, Type I-U?	GTTTCAATCCACGCGCCCGTGAGGGCGCGACC,GTTTCAATCCACGCGCCCGTGAGGGCGCGACC,GTTTCAATCCACGCGCCCGTGAGGGCGCGACC	32,32,32	1	1	705935-705968	NZ_CP020882.1_2969147-2969180	I-C:I-C:I-C	3,3,3	3	TypeI-U,TypeI-C,TypeI-U?	DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	NA,NA|87aa|down_7|NZ_CP020882.1_718401_718662_-	NA|456aa|up_9|NZ_CP020882.1_689312_690680_+	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|1047aa|up_8|NZ_CP020882.1_690862_694003_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1083aa|up_7|NZ_CP020882.1_694183_697432_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|415aa|up_6|NZ_CP020882.1_697525_698770_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|436aa|up_5|NZ_CP020882.1_699028_700336_+	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|272aa|up_4|NZ_CP020882.1_700494_701310_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|98aa|up_3|NZ_CP020882.1_701412_701706_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|186aa|up_2|NZ_CP020882.1_701810_702368_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|261aa|up_1|NZ_CP020882.1_703958_704741_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|337aa|up_0|NZ_CP020882.1_704740_705751_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas1|345aa|down_0|NZ_CP020882.1_706564_707599_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|211aa|down_1|NZ_CP020882.1_707601_708234_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|289aa|down_2|NZ_CP020882.1_708253_709120_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|623aa|down_3|NZ_CP020882.1_709116_710985_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas3|765aa|down_4|NZ_CP020882.1_711738_714033_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|567aa|down_5|NZ_CP020882.1_714196_715897_-	COG4715, COG4715, Uncharacterized conserved protein [Function unknown]	NA|744aa|down_6|NZ_CP020882.1_716098_718330_+	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|87aa|down_7|NZ_CP020882.1_718401_718662_-	NA	NA|316aa|down_8|NZ_CP020882.1_718763_719711_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|580aa|down_9|NZ_CP020882.1_719707_721447_+	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK)
GCF_002139975.1_ASM213997v1	NZ_CP020882	Xanthomonas citri pv. citri strain TX160042 chromosome, complete genome	4	3057264-3057358	4	CRISPRCasFinder	no		DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	Orphan	CTGGCCGAAATGGATGCCGACCC	23	0	0	NA	NA	NA	1	1	Orphan	DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	NA|213aa|up_8|NZ_CP020882.1_3045526_3046165_-,NA|385aa|up_6|NZ_CP020882.1_3047458_3048613_-,NA|173aa|up_4|NZ_CP020882.1_3049409_3049928_-,NA|178aa|down_4|NZ_CP020882.1_3063613_3064147_+	NA|261aa|up_9|NZ_CP020882.1_3043041_3043824_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|213aa|up_8|NZ_CP020882.1_3045526_3046165_-	NA	NA|139aa|up_7|NZ_CP020882.1_3046251_3046668_-	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system	NA|385aa|up_6|NZ_CP020882.1_3047458_3048613_-	NA	NA|283aa|up_5|NZ_CP020882.1_3048622_3049471_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|173aa|up_4|NZ_CP020882.1_3049409_3049928_-	NA	NA|1052aa|up_3|NZ_CP020882.1_3050165_3053321_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|247aa|up_2|NZ_CP020882.1_3054179_3054920_+	PRK09109, motC, flagellar motor protein; Reviewed	NA|325aa|up_1|NZ_CP020882.1_3054926_3055901_+	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|261aa|up_0|NZ_CP020882.1_3055902_3056685_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|103aa|down_0|NZ_CP020882.1_3058058_3058367_+	pfam13466, STAS_2, STAS domain	NA|122aa|down_1|NZ_CP020882.1_3058363_3058729_+	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|669aa|down_2|NZ_CP020882.1_3058762_3060769_+	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|762aa|down_3|NZ_CP020882.1_3061008_3063294_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|178aa|down_4|NZ_CP020882.1_3063613_3064147_+	NA	NA|726aa|down_5|NZ_CP020882.1_3064670_3066848_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|930aa|down_6|NZ_CP020882.1_3066919_3069709_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|254aa|down_7|NZ_CP020882.1_3070005_3070767_+	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|791aa|down_8|NZ_CP020882.1_3070780_3073153_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|753aa|down_9|NZ_CP020882.1_3073373_3075632_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_002139975.1_ASM213997v1	NZ_CP020882	Xanthomonas citri pv. citri strain TX160042 chromosome, complete genome	5	5112837-5113021	5	CRISPRCasFinder	no		DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	Orphan	GTGCAGGTGCGCCCCTCGGCCGAGCA	26	0	0	NA	NA	NA	2	2	Orphan	DinG,cas1,cas4,cas7,cas8c,cas3,DEDDh,WYL,csa3,RT	NA,NA|206aa|down_2|NZ_CP020882.1_5115369_5115987_-,NA|251aa|down_3|NZ_CP020882.1_5116089_5116842_-	NA|76aa|up_9|NZ_CP020882.1_5102047_5102275_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|53aa|up_8|NZ_CP020882.1_5102607_5102766_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|337aa|up_7|NZ_CP020882.1_5102830_5103841_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|554aa|up_6|NZ_CP020882.1_5104071_5105733_-	PRK09274, PRK09274, peptide synthase; Provisional	NA|128aa|up_5|NZ_CP020882.1_5106055_5106439_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|301aa|up_4|NZ_CP020882.1_5106591_5107494_-	PRK00870, PRK00870, haloalkane dehalogenase; Provisional	NA|337aa|up_3|NZ_CP020882.1_5108208_5109219_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|up_2|NZ_CP020882.1_5109218_5110001_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|339aa|up_1|NZ_CP020882.1_5110909_5111926_-	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|107aa|up_0|NZ_CP020882.1_5112027_5112348_-	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|159aa|down_0|NZ_CP020882.1_5113222_5113699_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|410aa|down_1|NZ_CP020882.1_5114047_5115277_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|206aa|down_2|NZ_CP020882.1_5115369_5115987_-	NA	NA|251aa|down_3|NZ_CP020882.1_5116089_5116842_-	NA	NA|449aa|down_4|NZ_CP020882.1_5117031_5118378_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|481aa|down_5|NZ_CP020882.1_5118362_5119805_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|570aa|down_6|NZ_CP020882.1_5119854_5121564_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|199aa|down_7|NZ_CP020882.1_5121940_5122537_+	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|342aa|down_8|NZ_CP020882.1_5122990_5124016_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|171aa|down_9|NZ_CP020882.1_5124031_5124544_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated
