assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002139995.1_ASM213999v1	NZ_CP020889	Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome	1	2019258-2019491	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8c,cas7,cas4,cas1	DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	Type I-C,Type I-U, Type I-U?	GGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC,GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC,GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	35,32,32	2	2	2019361-2019391|2019361-2019394	NZ_CP020889.1_4588088-4588118|NZ_CP020889.1_4588088-4588121	I-C:I-C:I-C	3,3,3	3	TypeI-C,TypeI-U,TypeI-U?	DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	NA|87aa|up_7|NZ_CP020889.1_2006666_2006927_+,NA	NA|580aa|up_9|NZ_CP020889.1_2003881_2005621_-	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK)	NA|316aa|up_8|NZ_CP020889.1_2005617_2006565_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|87aa|up_7|NZ_CP020889.1_2006666_2006927_+	NA	NA|744aa|up_6|NZ_CP020889.1_2006998_2009230_-	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|567aa|up_5|NZ_CP020889.1_2009431_2011132_+	COG4715, COG4715, Uncharacterized conserved protein [Function unknown]	cas3|765aa|up_4|NZ_CP020889.1_2011295_2013590_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas8c|623aa|up_3|NZ_CP020889.1_2014343_2016212_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|289aa|up_2|NZ_CP020889.1_2016208_2017075_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|211aa|up_1|NZ_CP020889.1_2017094_2017727_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_0|NZ_CP020889.1_2017729_2018764_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|337aa|down_0|NZ_CP020889.1_2019577_2020588_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|down_1|NZ_CP020889.1_2020587_2021370_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|186aa|down_2|NZ_CP020889.1_2022960_2023518_-	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|98aa|down_3|NZ_CP020889.1_2023622_2023916_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|272aa|down_4|NZ_CP020889.1_2024018_2024834_-	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|436aa|down_5|NZ_CP020889.1_2024992_2026300_-	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|415aa|down_6|NZ_CP020889.1_2026558_2027803_+	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1102aa|down_7|NZ_CP020889.1_2027839_2031145_+	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|1047aa|down_8|NZ_CP020889.1_2031325_2034466_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|456aa|down_9|NZ_CP020889.1_2034648_2036016_-	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ
GCF_002139995.1_ASM213999v1	NZ_CP020889	Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome	2	2021546-2022830	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8c,cas7,cas4,cas1	DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	Type I-C,Type I-U, Type I-U?	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC,GTCGCGCCCTCACGGGCGCGTGGATTGAAAC,GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	31,31,31	0	0	NA	NA	I-C:I-C:I-C	19,19,19	19	TypeI-C,TypeI-U,TypeI-U?	DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	NA|87aa|up_9|NZ_CP020889.1_2006666_2006927_+,NA|88aa|down_8|NZ_CP020889.1_2036025_2036289_+,NA|216aa|down_9|NZ_CP020889.1_2036179_2036827_-	NA|87aa|up_9|NZ_CP020889.1_2006666_2006927_+	NA	NA|744aa|up_8|NZ_CP020889.1_2006998_2009230_-	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|567aa|up_7|NZ_CP020889.1_2009431_2011132_+	COG4715, COG4715, Uncharacterized conserved protein [Function unknown]	cas3|765aa|up_6|NZ_CP020889.1_2011295_2013590_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas8c|623aa|up_5|NZ_CP020889.1_2014343_2016212_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|289aa|up_4|NZ_CP020889.1_2016208_2017075_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|211aa|up_3|NZ_CP020889.1_2017094_2017727_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_2|NZ_CP020889.1_2017729_2018764_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|337aa|up_1|NZ_CP020889.1_2019577_2020588_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|up_0|NZ_CP020889.1_2020587_2021370_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|186aa|down_0|NZ_CP020889.1_2022960_2023518_-	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|98aa|down_1|NZ_CP020889.1_2023622_2023916_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|272aa|down_2|NZ_CP020889.1_2024018_2024834_-	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|436aa|down_3|NZ_CP020889.1_2024992_2026300_-	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|415aa|down_4|NZ_CP020889.1_2026558_2027803_+	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1102aa|down_5|NZ_CP020889.1_2027839_2031145_+	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|1047aa|down_6|NZ_CP020889.1_2031325_2034466_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|456aa|down_7|NZ_CP020889.1_2034648_2036016_-	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|88aa|down_8|NZ_CP020889.1_2036025_2036289_+	NA	NA|216aa|down_9|NZ_CP020889.1_2036179_2036827_-	NA
GCF_002139995.1_ASM213999v1	NZ_CP020889	Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome	3	2216261-2216559	3,3	PILER-CR,CRISPRCasFinder	no		DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	Orphan	TGGAAACGGTCAACGGC,TGGAAACGGTCAATGGCAGCATC	17,23	0	0	NA	NA	NA:NA	3,5	5	Orphan	DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	NA,NA|171aa|down_6|NZ_CP020889.1_2226322_2226835_-,NA|86aa|down_7|NZ_CP020889.1_2227103_2227361_-	NA|197aa|up_9|NZ_CP020889.1_2204172_2204763_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|261aa|up_8|NZ_CP020889.1_2205533_2206316_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|337aa|up_7|NZ_CP020889.1_2206315_2207326_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|234aa|up_6|NZ_CP020889.1_2208303_2209005_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|447aa|up_5|NZ_CP020889.1_2209274_2210615_-	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|231aa|up_4|NZ_CP020889.1_2210833_2211526_+	pfam01694, Rhomboid, Rhomboid family	NA|107aa|up_3|NZ_CP020889.1_2211634_2211955_+	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|331aa|up_2|NZ_CP020889.1_2211954_2212947_+	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|509aa|up_1|NZ_CP020889.1_2213112_2214639_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|412aa|up_0|NZ_CP020889.1_2214743_2215979_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|599aa|down_0|NZ_CP020889.1_2216957_2218754_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|148aa|down_1|NZ_CP020889.1_2219073_2219517_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|378aa|down_2|NZ_CP020889.1_2219809_2220943_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|351aa|down_3|NZ_CP020889.1_2221579_2222632_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|337aa|down_4|NZ_CP020889.1_2222888_2223899_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|down_5|NZ_CP020889.1_2223898_2224681_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|171aa|down_6|NZ_CP020889.1_2226322_2226835_-	NA	NA|86aa|down_7|NZ_CP020889.1_2227103_2227361_-	NA	NA|118aa|down_8|NZ_CP020889.1_2227879_2228233_+	pfam06877, RraB, Regulator of ribonuclease activity B	NA|178aa|down_9|NZ_CP020889.1_2228291_2228825_-	pfam08212, Lipocalin_2, Lipocalin-like domain
GCF_002139995.1_ASM213999v1	NZ_CP020889	Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome	4	2943125-2943309	4	CRISPRCasFinder	no		DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	Orphan	TGCTCGGCCGAAGGGCGCACCTGCAC	26	0	0	NA	NA	NA	2	2	Orphan	DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	NA|251aa|up_3|NZ_CP020889.1_2939303_2940056_+,NA|206aa|up_2|NZ_CP020889.1_2940158_2940776_+,NA|293aa|down_6|NZ_CP020889.1_2950964_2951843_+,NA|75aa|down_7|NZ_CP020889.1_2951954_2952179_+,NA|182aa|down_9|NZ_CP020889.1_2953155_2953701_-	NA|171aa|up_9|NZ_CP020889.1_2931601_2932114_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|342aa|up_8|NZ_CP020889.1_2932129_2933155_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|199aa|up_7|NZ_CP020889.1_2933608_2934205_-	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|576aa|up_6|NZ_CP020889.1_2934563_2936291_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|481aa|up_5|NZ_CP020889.1_2936340_2937783_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|449aa|up_4|NZ_CP020889.1_2937767_2939114_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|251aa|up_3|NZ_CP020889.1_2939303_2940056_+	NA	NA|206aa|up_2|NZ_CP020889.1_2940158_2940776_+	NA	NA|410aa|up_1|NZ_CP020889.1_2940868_2942098_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|159aa|up_0|NZ_CP020889.1_2942446_2942923_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|107aa|down_0|NZ_CP020889.1_2943797_2944118_+	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|339aa|down_1|NZ_CP020889.1_2944219_2945236_+	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|261aa|down_2|NZ_CP020889.1_2946144_2946927_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|337aa|down_3|NZ_CP020889.1_2946926_2947937_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|308aa|down_4|NZ_CP020889.1_2949262_2950186_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|153aa|down_5|NZ_CP020889.1_2950281_2950740_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|293aa|down_6|NZ_CP020889.1_2950964_2951843_+	NA	NA|75aa|down_7|NZ_CP020889.1_2951954_2952179_+	NA	NA|160aa|down_8|NZ_CP020889.1_2952574_2953054_+	PRK00024, PRK00024, DNA repair protein RadC	NA|182aa|down_9|NZ_CP020889.1_2953155_2953701_-	NA
GCF_002139995.1_ASM213999v1	NZ_CP020889	Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome	5	4677165-4677259	5	CRISPRCasFinder	no		DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	Orphan	CTGGCCGAAATGGATGCCGACCC	23	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,cas8c,cas7,cas4,cas1,RT,DEDDh,csa3	NA|102aa|up_9|NZ_CP020889.1_4666565_4666871_-,NA|123aa|up_8|NZ_CP020889.1_4666812_4667181_+,NA|385aa|up_7|NZ_CP020889.1_4667359_4668514_-,NA|173aa|up_5|NZ_CP020889.1_4669310_4669829_-,NA|66aa|up_3|NZ_CP020889.1_4673554_4673752_-,NA|178aa|down_4|NZ_CP020889.1_4683514_4684048_+,NA|94aa|down_7|NZ_CP020889.1_4689628_4689910_+	NA|102aa|up_9|NZ_CP020889.1_4666565_4666871_-	NA	NA|123aa|up_8|NZ_CP020889.1_4666812_4667181_+	NA	NA|385aa|up_7|NZ_CP020889.1_4667359_4668514_-	NA	NA|283aa|up_6|NZ_CP020889.1_4668523_4669372_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|173aa|up_5|NZ_CP020889.1_4669310_4669829_-	NA	NA|1014aa|up_4|NZ_CP020889.1_4670066_4673108_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|66aa|up_3|NZ_CP020889.1_4673554_4673752_-	NA	NA|247aa|up_2|NZ_CP020889.1_4674080_4674821_+	PRK09109, motC, flagellar motor protein; Reviewed	NA|325aa|up_1|NZ_CP020889.1_4674827_4675802_+	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|261aa|up_0|NZ_CP020889.1_4675803_4676586_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|103aa|down_0|NZ_CP020889.1_4677959_4678268_+	pfam13466, STAS_2, STAS domain	NA|122aa|down_1|NZ_CP020889.1_4678264_4678630_+	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|669aa|down_2|NZ_CP020889.1_4678663_4680670_+	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|762aa|down_3|NZ_CP020889.1_4680909_4683195_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|178aa|down_4|NZ_CP020889.1_4683514_4684048_+	NA	NA|726aa|down_5|NZ_CP020889.1_4684571_4686749_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|912aa|down_6|NZ_CP020889.1_4686874_4689610_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|94aa|down_7|NZ_CP020889.1_4689628_4689910_+	NA	NA|254aa|down_8|NZ_CP020889.1_4689906_4690668_+	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|791aa|down_9|NZ_CP020889.1_4690681_4693054_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein
